ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY790940.1| Homo sapiens insulin-like growth factor 1 (somato... 42 0.62
2ref|XM_547541.2| PREDICTED: Canis familiaris similar to ubiquili... 42 0.62
3gb|AC010202.6| Homo sapiens 12q BAC RP11-210L7 (Roswell Park Can... 42 0.62
4gb|AY260957.1| Homo sapiens insulin-like growth factor 1 (somato... 42 0.62
5gb|DQ175936.1| Hordeum vulgare subsp. vulgare clone 33-32A-RB fl... 40 2.4
6gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 2.4
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.4
8gb|AE004500.1| Pseudomonas aeruginosa PAO1, section 61 of 529 of... 40 2.4
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.4
10emb|AL732649.3|CNS08C9O Oryza sativa chromosome 12, . BAC OSJNBb... 40 2.4
11gb|AY727534.1| Toxoplasma gondii calcium ATPase SERCA-like mRNA,... 38 9.7
12gb|BT016795.1| Zea mays clone Contig628 mRNA sequence 38 9.7
13gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 38 9.7
14ref|XM_658042.1| Aspergillus nidulans FGSC A4 hypothetical prote... 38 9.7
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 9.7
16gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete s... 38 9.7
17emb|AL023586.1|HS426F10 Human DNA sequence from clone RP3-426F10... 38 9.7
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
19dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 9.7
20gb|AE004607.1| Pseudomonas aeruginosa PAO1, section 168 of 529 o... 38 9.7
21gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
22dbj|AB058947.1| Streptomyces albulus plasmid pNO33 DNA, complete... 38 9.7
23emb|BX511240.5| Zebrafish DNA sequence from clone CH211-113H10, ... 38 9.7
24dbj|AK108326.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 9.7
25emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 38 9.7
26gb|AY103595.1| Zea mays PCO108378 mRNA sequence 38 9.7
27dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 38 9.7
28gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7

>gb|AY790940.1| Homo sapiens insulin-like growth factor 1 (somatomedin C) (IGF1) gene,
             complete cds
          Length = 88577

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 116   ctgcttgaggccagccgtccc 136
             |||||||||||||||||||||
Sbjct: 23092 ctgcttgaggccagccgtccc 23112



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>ref|XM_547541.2| PREDICTED: Canis familiaris similar to ubiquilin 4 (LOC490419),
           mRNA
          Length = 1818

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 92  tcttggagcgctgttcccgggcagc 116
           |||||||| ||||||||||||||||
Sbjct: 745 tcttggagggctgttcccgggcagc 721



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>gb|AC010202.6| Homo sapiens 12q BAC RP11-210L7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 170004

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 116    ctgcttgaggccagccgtccc 136
              |||||||||||||||||||||
Sbjct: 105196 ctgcttgaggccagccgtccc 105216



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>gb|AY260957.1| Homo sapiens insulin-like growth factor 1 (somatomedin C) (IGF1) gene,
             complete cds
          Length = 88066

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 116   ctgcttgaggccagccgtccc 136
             |||||||||||||||||||||
Sbjct: 23091 ctgcttgaggccagccgtccc 23111



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>gb|DQ175936.1| Hordeum vulgare subsp. vulgare clone 33-32A-RB flanking T-DNA
           insertion sequence
          Length = 943

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 142 ggtgctgttcgccggcggcgaggc 165
           ||||||| ||||||||||||||||
Sbjct: 796 ggtgctggtcgccggcggcgaggc 819



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 142     ggtgctgttcgccggcggcgaggc 165
               ||||||||||| ||||||||||||
Sbjct: 4879352 ggtgctgttcggcggcggcgaggc 4879375



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 100     cgctgttcccgggcagctgc 119
               ||||||||||||||||||||
Sbjct: 6373178 cgctgttcccgggcagctgc 6373159



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>gb|AE004500.1| Pseudomonas aeruginosa PAO1, section 61 of 529 of the complete genome
          Length = 11849

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   ggtgctgttcgccggcggcg 161
             ||||||||||||||||||||
Sbjct: 10914 ggtgctgttcgccggcggcg 10933



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 100     cgctgttcccgggcagctgc 119
               ||||||||||||||||||||
Sbjct: 6373053 cgctgttcccgggcagctgc 6373034



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>emb|AL732649.3|CNS08C9O Oryza sativa chromosome 12, . BAC OSJNBb0067N05 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 109555

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   cgctgttcccgggcagctgc 119
             ||||||||||||||||||||
Sbjct: 34726 cgctgttcccgggcagctgc 34707



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>gb|AY727534.1| Toxoplasma gondii calcium ATPase SERCA-like mRNA, complete cds
          Length = 4128

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 50   ggttctggctgcgtcgtac 68
            |||||||||||||||||||
Sbjct: 1285 ggttctggctgcgtcgtac 1303



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>gb|BT016795.1| Zea mays clone Contig628 mRNA sequence
          Length = 1522

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 24 cctcgcattgttcccgaggactccttg 50
          |||||||||||| ||||||||| ||||
Sbjct: 65 cctcgcattgttaccgaggacttcttg 91



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 55     tggctgcgtcgtaccaggg 73
              |||||||||||||||||||
Sbjct: 707705 tggctgcgtcgtaccaggg 707687



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>ref|XM_658042.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5530.2), mRNA
          Length = 714

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 99  gcgctgttcccgggcagct 117
           |||||||||||||||||||
Sbjct: 273 gcgctgttcccgggcagct 255



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 142     ggtgctgttcgccggcggcgagg 164
               |||||| ||||||||||||||||
Sbjct: 4182310 ggtgctattcgccggcggcgagg 4182332



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>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence
          Length = 634917

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 124    ggccagccgtcccgtcagg 142
              |||||||||||||||||||
Sbjct: 334490 ggccagccgtcccgtcagg 334472



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>emb|AL023586.1|HS426F10 Human DNA sequence from clone RP3-426F10 on chromosome 1p36.21-36.33
             Contains 3' end of the gene for the transmembrane protein
             SHREW1, complete sequence
          Length = 91640

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 111   ggcagctgcttgaggccag 129
             |||||||||||||||||||
Sbjct: 20931 ggcagctgcttgaggccag 20913



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 142     ggtgctgttcgccggcggcgagg 164
               |||||| ||||||||||||||||
Sbjct: 4182419 ggtgctattcgccggcggcgagg 4182441



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 142     ggtgctgttcgccggcggc 160
               |||||||||||||||||||
Sbjct: 4229345 ggtgctgttcgccggcggc 4229327



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>gb|AE004607.1| Pseudomonas aeruginosa PAO1, section 168 of 529 of the complete
            genome
          Length = 10160

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 142  ggtgctgttcgccggcggc 160
            |||||||||||||||||||
Sbjct: 4063 ggtgctgttcgccggcggc 4045



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>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0050H14, complete sequence
          Length = 142245

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 142   ggtgctgttcgccggcggcgagg 164
             |||||| ||||||||||||||||
Sbjct: 82947 ggtgctattcgccggcggcgagg 82969



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>dbj|AB058947.1| Streptomyces albulus plasmid pNO33 DNA, complete sequence
          Length = 36955

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 145   gctgttcgccggcggcgag 163
             |||||||||||||||||||
Sbjct: 26945 gctgttcgccggcggcgag 26927



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>emb|BX511240.5| Zebrafish DNA sequence from clone CH211-113H10, complete sequence
          Length = 175187

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 81     agcggtgccgttcttggag 99
              |||||||||||||||||||
Sbjct: 106022 agcggtgccgttcttggag 106040



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>dbj|AK108326.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-H07, full
           insert sequence
          Length = 885

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 142 ggtgctgttcgccggcggcgagg 164
           |||||| ||||||||||||||||
Sbjct: 104 ggtgctattcgccggcggcgagg 82



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 70      agggacagggtagcggtgccgttcttg 96
               |||| |||||| |||||||||||||||
Sbjct: 1015976 agggtcagggtggcggtgccgttcttg 1015950



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>gb|AY103595.1| Zea mays PCO108378 mRNA sequence
          Length = 1960

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 24  cctcgcattgttcccgaggactccttg 50
           |||||||||||| ||||||||| ||||
Sbjct: 651 cctcgcattgttaccgaggacttcttg 677



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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 163    ggcaatggggagcggccgc 181
              |||||||||||||||||||
Sbjct: 574609 ggcaatggggagcggccgc 574591



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>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0076N15, complete sequence
          Length = 134307

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 142   ggtgctgttcgccggcggcgagg 164
             |||||| ||||||||||||||||
Sbjct: 10925 ggtgctattcgccggcggcgagg 10947


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,239,440
Number of Sequences: 3902068
Number of extensions: 1239440
Number of successful extensions: 96300
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95437
Number of HSP's gapped (non-prelim): 863
length of query: 195
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 173
effective length of database: 17,147,199,772
effective search space: 2966465560556
effective search space used: 2966465560556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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