Clone Name | bastl23b07 |
---|---|
Clone Library Name | barley_pub |
>gb|AY790940.1| Homo sapiens insulin-like growth factor 1 (somatomedin C) (IGF1) gene, complete cds Length = 88577 Score = 42.1 bits (21), Expect = 0.62 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 ctgcttgaggccagccgtccc 136 ||||||||||||||||||||| Sbjct: 23092 ctgcttgaggccagccgtccc 23112
>ref|XM_547541.2| PREDICTED: Canis familiaris similar to ubiquilin 4 (LOC490419), mRNA Length = 1818 Score = 42.1 bits (21), Expect = 0.62 Identities = 24/25 (96%) Strand = Plus / Minus Query: 92 tcttggagcgctgttcccgggcagc 116 |||||||| |||||||||||||||| Sbjct: 745 tcttggagggctgttcccgggcagc 721
>gb|AC010202.6| Homo sapiens 12q BAC RP11-210L7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170004 Score = 42.1 bits (21), Expect = 0.62 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 ctgcttgaggccagccgtccc 136 ||||||||||||||||||||| Sbjct: 105196 ctgcttgaggccagccgtccc 105216
>gb|AY260957.1| Homo sapiens insulin-like growth factor 1 (somatomedin C) (IGF1) gene, complete cds Length = 88066 Score = 42.1 bits (21), Expect = 0.62 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 ctgcttgaggccagccgtccc 136 ||||||||||||||||||||| Sbjct: 23091 ctgcttgaggccagccgtccc 23111
>gb|DQ175936.1| Hordeum vulgare subsp. vulgare clone 33-32A-RB flanking T-DNA insertion sequence Length = 943 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 ggtgctgttcgccggcggcgaggc 165 ||||||| |||||||||||||||| Sbjct: 796 ggtgctggtcgccggcggcgaggc 819
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 ggtgctgttcgccggcggcgaggc 165 ||||||||||| |||||||||||| Sbjct: 4879352 ggtgctgttcggcggcggcgaggc 4879375
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 cgctgttcccgggcagctgc 119 |||||||||||||||||||| Sbjct: 6373178 cgctgttcccgggcagctgc 6373159
>gb|AE004500.1| Pseudomonas aeruginosa PAO1, section 61 of 529 of the complete genome Length = 11849 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ggtgctgttcgccggcggcg 161 |||||||||||||||||||| Sbjct: 10914 ggtgctgttcgccggcggcg 10933
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 cgctgttcccgggcagctgc 119 |||||||||||||||||||| Sbjct: 6373053 cgctgttcccgggcagctgc 6373034
>emb|AL732649.3|CNS08C9O Oryza sativa chromosome 12, . BAC OSJNBb0067N05 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109555 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 cgctgttcccgggcagctgc 119 |||||||||||||||||||| Sbjct: 34726 cgctgttcccgggcagctgc 34707
>gb|AY727534.1| Toxoplasma gondii calcium ATPase SERCA-like mRNA, complete cds Length = 4128 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 ggttctggctgcgtcgtac 68 ||||||||||||||||||| Sbjct: 1285 ggttctggctgcgtcgtac 1303
>gb|BT016795.1| Zea mays clone Contig628 mRNA sequence Length = 1522 Score = 38.2 bits (19), Expect = 9.7 Identities = 25/27 (92%) Strand = Plus / Plus Query: 24 cctcgcattgttcccgaggactccttg 50 |||||||||||| ||||||||| |||| Sbjct: 65 cctcgcattgttaccgaggacttcttg 91
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 55 tggctgcgtcgtaccaggg 73 ||||||||||||||||||| Sbjct: 707705 tggctgcgtcgtaccaggg 707687
>ref|XM_658042.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5530.2), mRNA Length = 714 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 gcgctgttcccgggcagct 117 ||||||||||||||||||| Sbjct: 273 gcgctgttcccgggcagct 255
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 142 ggtgctgttcgccggcggcgagg 164 |||||| |||||||||||||||| Sbjct: 4182310 ggtgctattcgccggcggcgagg 4182332
>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence Length = 634917 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 ggccagccgtcccgtcagg 142 ||||||||||||||||||| Sbjct: 334490 ggccagccgtcccgtcagg 334472
>emb|AL023586.1|HS426F10 Human DNA sequence from clone RP3-426F10 on chromosome 1p36.21-36.33 Contains 3' end of the gene for the transmembrane protein SHREW1, complete sequence Length = 91640 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 111 ggcagctgcttgaggccag 129 ||||||||||||||||||| Sbjct: 20931 ggcagctgcttgaggccag 20913
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 142 ggtgctgttcgccggcggcgagg 164 |||||| |||||||||||||||| Sbjct: 4182419 ggtgctattcgccggcggcgagg 4182441
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 142 ggtgctgttcgccggcggc 160 ||||||||||||||||||| Sbjct: 4229345 ggtgctgttcgccggcggc 4229327
>gb|AE004607.1| Pseudomonas aeruginosa PAO1, section 168 of 529 of the complete genome Length = 10160 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 142 ggtgctgttcgccggcggc 160 ||||||||||||||||||| Sbjct: 4063 ggtgctgttcgccggcggc 4045
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 142 ggtgctgttcgccggcggcgagg 164 |||||| |||||||||||||||| Sbjct: 82947 ggtgctattcgccggcggcgagg 82969
>dbj|AB058947.1| Streptomyces albulus plasmid pNO33 DNA, complete sequence Length = 36955 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 145 gctgttcgccggcggcgag 163 ||||||||||||||||||| Sbjct: 26945 gctgttcgccggcggcgag 26927
>emb|BX511240.5| Zebrafish DNA sequence from clone CH211-113H10, complete sequence Length = 175187 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 agcggtgccgttcttggag 99 ||||||||||||||||||| Sbjct: 106022 agcggtgccgttcttggag 106040
>dbj|AK108326.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-H07, full insert sequence Length = 885 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 142 ggtgctgttcgccggcggcgagg 164 |||||| |||||||||||||||| Sbjct: 104 ggtgctattcgccggcggcgagg 82
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 38.2 bits (19), Expect = 9.7 Identities = 25/27 (92%) Strand = Plus / Minus Query: 70 agggacagggtagcggtgccgttcttg 96 |||| |||||| ||||||||||||||| Sbjct: 1015976 agggtcagggtggcggtgccgttcttg 1015950
>gb|AY103595.1| Zea mays PCO108378 mRNA sequence Length = 1960 Score = 38.2 bits (19), Expect = 9.7 Identities = 25/27 (92%) Strand = Plus / Plus Query: 24 cctcgcattgttcccgaggactccttg 50 |||||||||||| ||||||||| |||| Sbjct: 651 cctcgcattgttaccgaggacttcttg 677
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 163 ggcaatggggagcggccgc 181 ||||||||||||||||||| Sbjct: 574609 ggcaatggggagcggccgc 574591
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 142 ggtgctgttcgccggcggcgagg 164 |||||| |||||||||||||||| Sbjct: 10925 ggtgctattcgccggcggcgagg 10947 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,239,440 Number of Sequences: 3902068 Number of extensions: 1239440 Number of successful extensions: 96300 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95437 Number of HSP's gapped (non-prelim): 863 length of query: 195 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 173 effective length of database: 17,147,199,772 effective search space: 2966465560556 effective search space used: 2966465560556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)