ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 305 3e-80
2ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 127 2e-26
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 127 2e-26
4gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 127 2e-26
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 127 2e-26
6dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 2e-26
7emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 111 9e-22
8ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA 82 8e-13
9gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 82 8e-13
10gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genom... 82 8e-13
11gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (L... 74 2e-10
12gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds 74 2e-10
13gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds 74 2e-10
14gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence 74 2e-10
15gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds 74 2e-10
16gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene,... 60 3e-06
17gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of... 44 0.17
18ref|NM_003028.1| Homo sapiens Src homology 2 domain containing a... 42 0.69
19gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-car... 42 0.69
20emb|X75342.1|HSSHB H.sapiens SHB mRNA 42 0.69
21gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.7
22gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, comp... 40 2.7
23emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete ch... 40 2.7
24emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0... 40 2.7
25gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 2.7
26dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 2.7
27dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 2.7
28dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.7
29gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 2.7 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  305 bits (154), Expect = 3e-80
 Identities = 203/214 (94%), Gaps = 4/214 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacagcagcaccacagcgagctaacttagcaagcgtgccacactccccagagatcgagc 60
           |||||||| |||| |||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 4   acacagca-caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcgagc 60

                                                                       
Query: 61  gaagatgtttggcgtcggcggcatcgtgagcgacctgacggggggcctccggggcgccca 120
            |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 61  -aagatgcttggcgtcggcggcatcgtgagcgacttgacggggggcatccggggcgccca 119

                                                                       
Query: 121 cctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgacttcggcgc 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 120 cctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgc 179

                                             
Query: 181 caccgtcatggacggcgtcaccgagctcctcggc 214
           |  |||||||||||||||||||||||||||||||
Sbjct: 180 ccacgtcatggacggcgtcaccgagctcctcggc 213
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>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score =  127 bits (64), Expect = 2e-26
 Identities = 91/100 (91%)
 Strand = Plus / Plus

                                                                       
Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgactt 174
           ||||| ||||||||||||| |||||||||||||||||||||| | |||| ||||||||||
Sbjct: 42  cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 101

                                                   
Query: 175 cggcgccaccgtcatggacggcgtcaccgagctcctcggc 214
           ||||||||||||||| |||||| || ||||| ||||||||
Sbjct: 102 cggcgccaccgtcatcgacggcatctccgagttcctcggc 141
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  127 bits (64), Expect = 2e-26
 Identities = 91/100 (91%)
 Strand = Plus / Plus

                                                                            
Query: 115      cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgactt 174
                ||||| ||||||||||||| |||||||||||||||||||||| | |||| ||||||||||
Sbjct: 30023301 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30023360

                                                        
Query: 175      cggcgccaccgtcatggacggcgtcaccgagctcctcggc 214
                ||||||||||||||| |||||| || ||||| ||||||||
Sbjct: 30023361 cggcgccaccgtcatcgacggcatctccgagttcctcggc 30023400



 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                            
Query: 122      ctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgacttcggcgcc 181
                ||||||||| | || || ||||||||||||||||  | |||| |||||||||||||||||
Sbjct: 27798757 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27798816

                                                 
Query: 182      accgtcatggacggcgtcaccgagctcctcggc 214
                |||||||| |||||| ||  |||| ||||||||
Sbjct: 27798817 accgtcatcgacggcctcggcgagttcctcggc 27798849



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 71       ggcgtcggcggcatcgtgag 90
                ||||||||||||||||||||
Sbjct: 24817033 ggcgtcggcggcatcgtgag 24817052
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score =  127 bits (64), Expect = 2e-26
 Identities = 91/100 (91%)
 Strand = Plus / Minus

                                                                         
Query: 115   cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgactt 174
             ||||| ||||||||||||| |||||||||||||||||||||| | |||| ||||||||||
Sbjct: 84450 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 84391

                                                     
Query: 175   cggcgccaccgtcatggacggcgtcaccgagctcctcggc 214
             ||||||||||||||| |||||| || ||||| ||||||||
Sbjct: 84390 cggcgccaccgtcatcgacggcatctccgagttcctcggc 84351
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  127 bits (64), Expect = 2e-26
 Identities = 91/100 (91%)
 Strand = Plus / Plus

                                                                            
Query: 115      cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgactt 174
                ||||| ||||||||||||| |||||||||||||||||||||| | |||| ||||||||||
Sbjct: 30114723 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30114782

                                                        
Query: 175      cggcgccaccgtcatggacggcgtcaccgagctcctcggc 214
                ||||||||||||||| |||||| || ||||| ||||||||
Sbjct: 30114783 cggcgccaccgtcatcgacggcatctccgagttcctcggc 30114822



 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                            
Query: 122      ctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgacttcggcgcc 181
                ||||||||| | || || ||||||||||||||||  | |||| |||||||||||||||||
Sbjct: 27890081 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27890140

                                                 
Query: 182      accgtcatggacggcgtcaccgagctcctcggc 214
                |||||||| |||||| ||  |||| ||||||||
Sbjct: 27890141 accgtcatcgacggcctcggcgagttcctcggc 27890173



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 71       ggcgtcggcggcatcgtgag 90
                ||||||||||||||||||||
Sbjct: 24908356 ggcgtcggcggcatcgtgag 24908375
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>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
           insert sequence
          Length = 2928

 Score =  127 bits (64), Expect = 2e-26
 Identities = 91/100 (91%)
 Strand = Plus / Plus

                                                                       
Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgactt 174
           ||||| ||||||||||||| |||||||||||||||||||||| | |||| ||||||||||
Sbjct: 157 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 216

                                                   
Query: 175 cggcgccaccgtcatggacggcgtcaccgagctcctcggc 214
           ||||||||||||||| |||||| || ||||| ||||||||
Sbjct: 217 cggcgccaccgtcatcgacggcatctccgagttcctcggc 256
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>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score =  111 bits (56), Expect = 9e-22
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                       
Query: 115 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgactt 174
           ||||| ||||||||||||| |||||||||||||||||||||| | |||| ||||||||||
Sbjct: 139 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 198

                                                   
Query: 175 cggcgccaccgtcatggacggcgtcaccgagctcctcggc 214
           ||||||||||||||| ||  || || ||||| ||||||||
Sbjct: 199 cggcgccaccgtcatcgagcgcatctccgagttcctcggc 238
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>ref|XM_469409.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2601

 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                       
Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgacttcggcgcc 181
           ||||||||| | || || ||||||||||||||||  | |||| |||||||||||||||||
Sbjct: 52  ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 111

                                            
Query: 182 accgtcatggacggcgtcaccgagctcctcggc 214
           |||||||| |||||| ||  |||| ||||||||
Sbjct: 112 accgtcatcgacggcctcggcgagttcctcggc 144
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>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                         
Query: 122   ctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgacttcggcgcc 181
             ||||||||| | || || ||||||||||||||||  | |||| |||||||||||||||||
Sbjct: 42887 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 42946

                                              
Query: 182   accgtcatggacggcgtcaccgagctcctcggc 214
             |||||||| |||||| ||  |||| ||||||||
Sbjct: 42947 accgtcatcgacggcctcggcgagttcctcggc 42979
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>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 80/93 (86%)
 Strand = Plus / Minus

                                                                         
Query: 122   ctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgacttcggcgcc 181
             ||||||||| | || || ||||||||||||||||  | |||| |||||||||||||||||
Sbjct: 15136 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 15077

                                              
Query: 182   accgtcatggacggcgtcaccgagctcctcggc 214
             |||||||| |||||| ||  |||| ||||||||
Sbjct: 15076 accgtcatcgacggcctcggcgagttcctcggc 15044
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>gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (Lox:Hv1) gene, promoter
            region and partial cds
          Length = 5236

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                        
Query: 122  ctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgacttcggcgcc 181
            ||||||||| | || || |||||||||||||||| ||  ||| |||||||||||||||||
Sbjct: 3566 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 3625

                                             
Query: 182  accgtcatggacggcgtcaccgagctcctcggc 214
            ||| |||| |||||| ||  |||| ||||||||
Sbjct: 3626 accatcatcgacggcatcggcgagttcctcggc 3658
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>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds
          Length = 5013

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                       
Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgacttcggcgcc 181
           ||||||||| | || || |||||||||||||||| ||  ||| |||||||||||||||||
Sbjct: 200 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 259

                                            
Query: 182 accgtcatggacggcgtcaccgagctcctcggc 214
           |||||| | ||| || ||| |||| ||||||||
Sbjct: 260 accgtcgttgacagcatcagcgagttcctcggc 292
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>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds
          Length = 2595

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                       
Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgacttcggcgcc 181
           ||||||||| | || || |||||||||||||||| ||  ||| |||||||||||||||||
Sbjct: 52  ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 111

                                            
Query: 182 accgtcatggacggcgtcaccgagctcctcggc 214
           |||||| | ||| || ||| |||| ||||||||
Sbjct: 112 accgtcgttgacagcatcagcgagttcctcggc 144
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>gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence
          Length = 515

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                       
Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgacttcggcgcc 181
           ||||||||| | || || |||||||||||||||| ||  ||| |||||||||||||||||
Sbjct: 114 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 173

                                            
Query: 182 accgtcatggacggcgtcaccgagctcctcggc 214
           |||||| | ||| || ||| |||| ||||||||
Sbjct: 174 accgtcgttgacagcatcagcgagttcctcggc 206
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>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds
          Length = 2818

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                       
Query: 122 ctcaagggctccgtcgtcctcatgcgcaagaacgcgcccgacttcaacgacttcggcgcc 181
           ||||||||| | || || |||||||||||||||| ||  ||| |||||||||||||||||
Sbjct: 123 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 182

                                            
Query: 182 accgtcatggacggcgtcaccgagctcctcggc 214
           ||| |||| |||||| ||  |||| ||||||||
Sbjct: 183 accatcatcgacggcatcggcgagttcctcggc 215
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>gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene, partial cds
          Length = 1160

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 146 cgcaagaacgcgcccgacttcaacgacttcggcgccaccgtc 187
           ||||||||||| | |||| |||||||||||||||||||||||
Sbjct: 1   cgcaagaacgccctcgacatcaacgacttcggcgccaccgtc 42
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>gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of the complete genome
          Length = 8803

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 154  cgcgcccgacttcaacgacttcggcg 179
            ||||| ||||||||||||||||||||
Sbjct: 4469 cgcgcacgacttcaacgacttcggcg 4494
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>ref|NM_003028.1| Homo sapiens Src homology 2 domain containing adaptor protein B
           (SHB), mRNA
          Length = 2306

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 99  cggggggcctccggggcgccc 119
           |||||||||||||||||||||
Sbjct: 469 cggggggcctccggggcgccc 449
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>gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-carbonic anhydrase
           mRNA, partial cds
          Length = 775

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 175 cggcgccaccgtcatggacggcgtcaccg 203
           ||||||||| ||||||||||||| |||||
Sbjct: 400 cggcgccacggtcatggacggcgccaccg 428
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>emb|X75342.1|HSSHB H.sapiens SHB mRNA
          Length = 2306

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 99  cggggggcctccggggcgccc 119
           |||||||||||||||||||||
Sbjct: 469 cggggggcctccggggcgccc 449
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>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13
             map near C50029S, complete sequence
          Length = 129900

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    ggcgtcggcggcatcgtgag 90
             ||||||||||||||||||||
Sbjct: 52268 ggcgtcggcggcatcgtgag 52287
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>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence
          Length = 236455

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 76     cggcggcatcgtgagcgacctgac 99
              ||||||||||| ||||||||||||
Sbjct: 205636 cggcggcatcgagagcgacctgac 205659
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>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12
          Length = 323450

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    cggcggcatcgtgagcgacctgac 99
             ||||||||||| ||||||||||||
Sbjct: 80122 cggcggcatcgagagcgacctgac 80099
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>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 128559

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     ggcgtcggcggcatcgtgag 90
              ||||||||||||||||||||
Sbjct: 103984 ggcgtcggcggcatcgtgag 104003
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 174     tcggcgccaccgtcatggacggcg 197
               ||||||||| ||||||||||||||
Sbjct: 2990742 tcggcgccatcgtcatggacggcg 2990719
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 71      ggcgtcggcggcatcgtgagcgac 94
               |||||||||||||||||| |||||
Sbjct: 5079435 ggcgtcggcggcatcgtgcgcgac 5079412
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 71     ggcgtcggcggcatcgtgagcgac 94
              |||||||||||||||||| |||||
Sbjct: 590306 ggcgtcggcggcatcgtgcgcgac 590329
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>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full
           insert sequence
          Length = 1556

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 71  ggcgtcggcggcatcgtgag 90
           ||||||||||||||||||||
Sbjct: 613 ggcgtcggcggcatcgtgag 594
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 71     ggcgtcggcggcatcgtgagcgac 94
              |||||||||||||||||| |||||
Sbjct: 657733 ggcgtcggcggcatcgtgcgcgac 657756


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,016,505
Number of Sequences: 3902068
Number of extensions: 1016505
Number of successful extensions: 73361
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72332
Number of HSP's gapped (non-prelim): 1026
length of query: 214
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 192
effective length of database: 17,147,199,772
effective search space: 3292262356224
effective search space used: 3292262356224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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