ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein 30 2.4
2SNX20_MOUSE (Q9D2Y5) Sorting nexin-20 29 3.1
3MYOC_DICDI (P42522) Myosin IC heavy chain 29 3.1
4OPGH_RALSO (Q8XVC2) Glucans biosynthesis glucosyltransferase H (... 29 4.1
5ACRO_PIG (P08001) Acrosin precursor (EC 3.4.21.10) (53 kDa fucos... 29 4.1
6NFH_MOUSE (P19246) Neurofilament triplet H protein (200 kDa neur... 28 5.4
7K10_DROME (P13468) DNA-binding protein K10 (Female sterile prote... 28 5.4
8CAP1_DICDI (P19198) cAMP-binding protein CABP1A/CABP1B (CABP1 pr... 28 5.4
9OST4_HUMAN (Q9Y661) Heparan sulfate glucosamine 3-O-sulfotransfe... 28 7.0
10CYSD_SCHPO (O13326) O-acetylhomoserine (thiol)-lyase (EC 2.5.1.4... 28 9.2

>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein|
          Length = 977

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +1

Query: 55  PIGAQSEPGSSAVVPPSPDLPNPQKLPR 138
           P  AQS P  +AV+PPSP LP P   PR
Sbjct: 422 PPRAQSAPPEAAVLPPSP-LPAPVASPR 448



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>SNX20_MOUSE (Q9D2Y5) Sorting nexin-20|
          Length = 313

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +1

Query: 28  GSPKWRNRRPIGAQSEPGSSAVVPPSPDLPNP 123
           GSP WR   PI          V+PP PDLP P
Sbjct: 8   GSPGWRG--PINQCRTRTRQEVLPPGPDLPCP 37



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>MYOC_DICDI (P42522) Myosin IC heavy chain|
          Length = 1181

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +1

Query: 1    KQAARSPGFGSPKWRNRRPIGAQSEPGSSAVVPP----SPDLPNPQKLP 135
            K+ A +PG G+P  +   P+     PG SA++ P    S  LP+P   P
Sbjct: 1026 KKPAPAPG-GAPMMKKPAPVPGGPAPGGSAIMKPAGGVSKPLPSPTGAP 1073



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>OPGH_RALSO (Q8XVC2) Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)|
          Length = 862

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 34  PKWRNRRPIGAQSEPGSSAVVPPSPDLPNPQKLPR 138
           P WR RR IG     G++ V    PD P+P+ + R
Sbjct: 147 PIWRARRAIGRLFSGGTAPVPYEQPDSPDPKGIWR 181



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>ACRO_PIG (P08001) Acrosin precursor (EC 3.4.21.10) (53 kDa fucose-binding|
           protein) [Contains: Acrosin light chain; Acrosin heavy
           chain]
          Length = 415

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 34  PKWRNRRPIGAQSEPGSSAVVPPSPDLPNPQKLP 135
           P W  +RP G   +PGS    P  P  P P   P
Sbjct: 321 PPWYFQRPPGPSQQPGSRPRPPAPPPAPPPPPPP 354



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>NFH_MOUSE (P19246) Neurofilament triplet H protein (200 kDa neurofilament|
           protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1090

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +3

Query: 33  PKMAKSPAD-RSPI*ARKLGS--SPSLARSPESPKAP 134
           P  AKSPA+ +SP  A+  G   SP  A+SP  PK+P
Sbjct: 530 PGEAKSPAEAKSPGEAKSPGEAKSPGEAKSPAEPKSP 566



 Score = 27.7 bits (60), Expect = 9.2
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 33  PKMAKSPAD-RSPI*ARKLGS--SPSLARSPESPKAP 134
           P  AKSPA+ +SP  A+      SP  A+SP  PK+P
Sbjct: 656 PAEAKSPAEAKSPAEAKSPAEVKSPGEAKSPAEPKSP 692



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>K10_DROME (P13468) DNA-binding protein K10 (Female sterile protein K10)|
          Length = 463

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
 Frame = +1

Query: 19  PGF-----GSPKWRNRRPIGAQSEPGSSAVVPPSPD-----LPNPQKLP 135
           PGF     GSPK ++ + I  Q  P  +   PPSP+      PN Q+ P
Sbjct: 107 PGFKHNQVGSPKKKSMKGIKQQQHPSPNQQQPPSPNQQQHPSPNQQQHP 155



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>CAP1_DICDI (P19198) cAMP-binding protein CABP1A/CABP1B (CABP1 protein)|
          Length = 333

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 13  RSPGFGSPKWRNRRPIGAQSEPGSSAVVPPSPDLPN---PQKLP 135
           ++PG   P+ + R P GA  +PG     PP P  P    PQ+ P
Sbjct: 46  QTPGGYPPQQQQRPPTGAPQQPGGYP-TPPPPGAPGGYPPQQQP 88



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>OST4_HUMAN (Q9Y661) Heparan sulfate glucosamine 3-O-sulfotransferase 4 (EC|
           2.8.2.23) (Heparan sulfate D-glucosaminyl
           3-O-sulfotransferase 4) (Heparan sulfate
           3-O-sulfotransferase 4) (h3-OST-4)
          Length = 456

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 55  PIGAQSEPGSSAVVPPSPDLPNPQKLP 135
           P+  Q  PG++A  PPSP  P P  LP
Sbjct: 62  PLALQESPGAAAEPPPSP--PPPSLLP 86



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>CYSD_SCHPO (O13326) O-acetylhomoserine (thiol)-lyase (EC 2.5.1.49)|
           (O-acetylhomoserine sulfhydrylase) (OAH sulfhydrylase)
           (Homocysteine synthase)
          Length = 429

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 101 GGTTAELPGSDWAPIGRRFRHFGEPNPG 18
           GG   +    DW    +RF  F EP+PG
Sbjct: 220 GGVIVDSGKFDWKKNSKRFPEFNEPHPG 247


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.309    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,118,656
Number of Sequences: 219361
Number of extensions: 478226
Number of successful extensions: 1950
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1937
length of database: 80,573,946
effective HSP length: 21
effective length of database: 75,967,365
effective search space used: 1823216760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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