Clone Name | bastl23a06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 7e-09 Identities = 40/42 (95%) Strand = Plus / Plus Query: 36 aaaatggcgaaatcgccggccgatcggagcccaatctgagcc 77 ||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 36272308 aaaatggcggaatcgccggctgatcggagcccaatctgagcc 36272349
>dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446B05 Length = 149145 Score = 67.9 bits (34), Expect = 7e-09 Identities = 40/42 (95%) Strand = Plus / Plus Query: 36 aaaatggcgaaatcgccggccgatcggagcccaatctgagcc 77 ||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 22185 aaaatggcggaatcgccggctgatcggagcccaatctgagcc 22226
>dbj|AK099801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098A15, full insert sequence Length = 3958 Score = 67.9 bits (34), Expect = 7e-09 Identities = 40/42 (95%) Strand = Plus / Plus Query: 36 aaaatggcgaaatcgccggccgatcggagcccaatctgagcc 77 ||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 98 aaaatggcggaatcgccggctgatcggagcccaatctgagcc 139
>dbj|AK102882.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112I24, full insert sequence Length = 2841 Score = 60.0 bits (30), Expect = 2e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 40 tggcgaaatcgccggccgatcggagcccaatctgagcc 77 ||||| |||||||||| ||||||||||||||||||||| Sbjct: 98 tggcggaatcgccggctgatcggagcccaatctgagcc 135
>ref|XM_949170.1| Theileria annulata strain Ankara hypothetical protein (TA20520) partial mRNA Length = 648 Score = 42.1 bits (21), Expect = 0.42 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 tttggttccccaaaatggcga 45 ||||||||||||||||||||| Sbjct: 66 tttggttccccaaaatggcga 86
>emb|BX883047.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 6/11 Length = 349571 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 aagccccgggtttggttccc 34 |||||||||||||||||||| Sbjct: 226776 aagccccgggtttggttccc 226757
>gb|AE009017.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 43 of 256 of the complete sequence Length = 11203 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 atggcgaaatcgccggccg 57 ||||||||||||||||||| Sbjct: 4501 atggcgaaatcgccggccg 4519
>gb|AY394471.1| Neisseria gonorrhoeae regulatory protein (pilA) gene, pilA-30 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AY394470.1| Neisseria gonorrhoeae regulatory protein (pilA) gene, pilA-29 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AY394469.1| Neisseria gonorrhoeae regulatory protein (pilA) gene, pilA-28 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AY394468.1| Neisseria gonorrhoeae regulatory protein (pilA) gene, pilA-27 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AY375559.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-26 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AY375558.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-25 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AY375557.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-24 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AY375556.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-23 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AY375555.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-22 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AY375554.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-21 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AY375553.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-20 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AY375552.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-19 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>emb|X13965.1|NG17PILA Neisseria gonorrhoeae pilA gene Length = 1920 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 753 caaaatggcgaaatcgctggccg 775
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 tggcgaaatcgccggccga 58 ||||||||||||||||||| Sbjct: 2803247 tggcgaaatcgccggccga 2803265
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 atggcgaaatcgccggccg 57 ||||||||||||||||||| Sbjct: 463087 atggcgaaatcgccggccg 463105
>gb|AF520325.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-18 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520324.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-17 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520323.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-16 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520322.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-15 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520321.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-14 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520320.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-13 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520319.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-12 allele, partial cds Length = 887 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 348 caaaatggcgaaatcgctggccg 370
>gb|AF520318.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-11 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520317.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-10 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520316.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-9 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520315.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-8 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520314.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-7 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520313.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-6 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520312.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-5 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520311.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-4 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520310.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-3 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AF520309.1| Neisseria gonorrhoeae regulatory protein PilA (pilA) gene, pilA-2 allele, partial cds Length = 932 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 393 caaaatggcgaaatcgctggccg 415
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 38.2 bits (19), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 35 caaaatggcgaaatcgccggccg 57 ||||||||||||||||| ||||| Sbjct: 2035227 caaaatggcgaaatcgctggccg 2035249
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 38.2 bits (19), Expect = 6.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 tggcgaaatcgccggccga 58 ||||||||||||||||||| Sbjct: 2826069 tggcgaaatcgccggccga 2826087 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 657,034 Number of Sequences: 3902068 Number of extensions: 657034 Number of successful extensions: 44684 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44421 Number of HSP's gapped (non-prelim): 263 length of query: 139 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 118 effective length of database: 17,151,101,840 effective search space: 2023830017120 effective search space used: 2023830017120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)