ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_476830.1| Oryza sativa (japonica cultivar-group), mRNA 214 1e-52
2dbj|AK070264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 1e-52
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
4dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
5dbj|AK064551.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
6gb|AC098697.4| Rattus norvegicus strain Brown Norway clone RP31-... 44 0.29
7emb|AL806513.5| Mouse DNA sequence from clone RP23-480E16 on chr... 44 0.29
8ref|XM_419792.1| PREDICTED: Gallus gallus similar to Protein KIA... 40 4.6
9ref|XM_448462.1| Candida glabrata CBS138, CAGL0K05445g partial mRNA 40 4.6
10gb|AC131794.3| Mus musculus BAC clone RP24-486P14 from chromosom... 40 4.6
11ref|XM_663096.1| Cryptosporidium hominis TU502 hypothetical prot... 40 4.6
12emb|AL592295.25| Human DNA sequence from clone RP11-122G18 on ch... 40 4.6
13emb|AL596266.3| Human DNA sequence from clone RP11-2L13 on chrom... 40 4.6
14gb|AC093450.20| Mus musculus strain C57BL/6J clone rp23-297j19 m... 40 4.6
15emb|CR380957.1| Candida glabrata strain CBS138 chromosome K comp... 40 4.6
16emb|BX901919.8| Zebrafish DNA sequence from clone DKEY-30I6 in l... 40 4.6
17emb|AJ293568.1|YDI293568 Yaba-like disease virus (YLDV), complet... 40 4.6
18emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in l... 40 4.6
19emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 i... 40 4.6
20gb|AC153012.4| Mus musculus BAC clone RP23-302F19 from chromosom... 40 4.6
21gb|AC183527.2| Mus musculus BAC clone RP23-30G12 from chromosome... 40 4.6
22gb|U40029.1| Caenorhabditis elegans cosmid F10G7, complete sequence 40 4.6
23gb|AC087543.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6
24gb|AC104072.3| Homo sapiens BAC clone RP11-320H14 from 4, comple... 40 4.6
25gb|U23521.1| Caenorhabditis elegans cosmid F41C3, complete sequence 40 4.6
26ref|XM_626140.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 4.6
27ref|NM_182131.1| Caenorhabditis elegans F10G7.10c (F10G7.10) mRN... 40 4.6
28ref|NM_182130.2| Caenorhabditis elegans F10G7.10b (F10G7.10) mRN... 40 4.6
29ref|NM_062440.3| Caenorhabditis elegans F10G7.10a (F10G7.10) mRN... 40 4.6
30dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
31gb|AC093745.3| Homo sapiens BAC clone RP11-25B15 from 4, complet... 40 4.6
32gb|AC145068.8| Mus musculus chromosome 8, clone RP23-197G5, comp... 40 4.6
33gb|AC078927.20| Homo sapiens 12 BAC RP11-745O10 (Roswell Park Ca... 40 4.6
34gb|AC108811.12| Mus musculus chromosome 8, clone RP23-284C19, co... 40 4.6
35gb|AC091777.26| Mus musculus strain C57BL/6J chromosome 17 clone... 40 4.6
36gb|AC159315.4| Mus musculus BAC clone RP23-86H21 from chromosome... 40 4.6
37gb|AC160641.2| Ornithorhynchus anatinus BAC clone OABb-469P24 fr... 40 4.6
38gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6
39gb|AC145954.3| Gallus gallus BAC clone CH261-13B2 from chromosom... 40 4.6
40emb|CT025606.10| Mouse DNA sequence from clone RP24-120D14 on ch... 40 4.6
41emb|AL807252.5| Mouse DNA sequence from clone RP23-456B18 on chr... 40 4.6
42emb|AL590674.5| Human DNA sequence from clone RP11-286N24 on chr... 40 4.6

>ref|XM_476830.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3351

 Score =  214 bits (108), Expect = 1e-52
 Identities = 251/296 (84%), Gaps = 2/296 (0%)
 Strand = Plus / Plus

                                                                        
Query: 14   tttttgagattctgagcaaatattttcctgtctacttcacacatggagccggtgataatt 73
            |||||||||||||||| ||||||| |||  ||||||||||||||||||  |||||| |||
Sbjct: 911  tttttgagattctgagtaaatattatccgatctacttcacacatggagtgggtgatgatt 970

                                                                        
Query: 74   taggtgttacaagagacgagctttctagggcattgatgcatgccttctgtgcaagcccgt 133
            ||| || |||||| || || ||||||| |||| | ||||||||||| ||| ||| ||| |
Sbjct: 971  tagatgctacaagggatgatctttctaaggcactaatgcatgccttttgttcaaccccat 1030

                                                                        
Query: 134  atttcgagccctttgccattccattgcttttagataaactttcttcctctcttccattag 193
            | || ||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 1031 actttgagccatttgcaattcctttgcttctagataaactttcttcctctcttccattag 1090

                                                                        
Query: 194  caaagcttgattccttaagatatttggacaattgcattcagtgctatggagctgatagaa 253
            | ||||||||||| |||| |||| |||| |||||||| |  |||||||| || || ||||
Sbjct: 1091 ccaagcttgattctttaaaatatctggataattgcatccgctgctatggtgcagacagaa 1150

                                                                    
Query: 254  tggttgcacacg-catcagctatttggtttaagttgaaagaagtgctttttagcct 308
            ||| |  ||| |  |||| |||||||||||||||||||||||||| | ||||||||
Sbjct: 1151 tgggtagacatgtaatca-ctatttggtttaagttgaaagaagtgatatttagcct 1205



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>dbj|AK070264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047J07, full
            insert sequence
          Length = 3350

 Score =  214 bits (108), Expect = 1e-52
 Identities = 251/296 (84%), Gaps = 2/296 (0%)
 Strand = Plus / Plus

                                                                        
Query: 14   tttttgagattctgagcaaatattttcctgtctacttcacacatggagccggtgataatt 73
            |||||||||||||||| ||||||| |||  ||||||||||||||||||  |||||| |||
Sbjct: 910  tttttgagattctgagtaaatattatccgatctacttcacacatggagtgggtgatgatt 969

                                                                        
Query: 74   taggtgttacaagagacgagctttctagggcattgatgcatgccttctgtgcaagcccgt 133
            ||| || |||||| || || ||||||| |||| | ||||||||||| ||| ||| ||| |
Sbjct: 970  tagatgctacaagggatgatctttctaaggcactaatgcatgccttttgttcaaccccat 1029

                                                                        
Query: 134  atttcgagccctttgccattccattgcttttagataaactttcttcctctcttccattag 193
            | || ||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 1030 actttgagccatttgcaattcctttgcttctagataaactttcttcctctcttccattag 1089

                                                                        
Query: 194  caaagcttgattccttaagatatttggacaattgcattcagtgctatggagctgatagaa 253
            | ||||||||||| |||| |||| |||| |||||||| |  |||||||| || || ||||
Sbjct: 1090 ccaagcttgattctttaaaatatctggataattgcatccgctgctatggtgcagacagaa 1149

                                                                    
Query: 254  tggttgcacacg-catcagctatttggtttaagttgaaagaagtgctttttagcct 308
            ||| |  ||| |  |||| |||||||||||||||||||||||||| | ||||||||
Sbjct: 1150 tgggtagacatgtaatca-ctatttggtttaagttgaaagaagtgatatttagcct 1204



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                           
Query: 111     gcatgccttctgtgcaagcccgtatttcgagccctttgccattccattgcttttagataa 170
               ||||||||| ||| ||| ||| || || ||||| ||||| ||||| |||||| |||||||
Sbjct: 4113958 gcatgccttttgttcaaccccatactttgagccatttgcaattcctttgcttctagataa 4114017

                                       
Query: 171     actttcttcctctcttccattagc 194
               ||||||||||||||||||||||||
Sbjct: 4114018 actttcttcctctcttccattagc 4114041



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                    
Query: 272     ctatttggtttaagttgaaagaagtgctttttagcct 308
               |||||||||||||||||||||||||| | ||||||||
Sbjct: 4114222 ctatttggtttaagttgaaagaagtgatatttagcct 4114258



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 14      tttttgagattctgagcaaatattttcctgtctacttcacacatg 58
               |||||||||||||||| ||||||| |||  |||||||||||||||
Sbjct: 4113581 tttttgagattctgagtaaatattatccgatctacttcacacatg 4113625



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>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0534H07
          Length = 144689

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                          
Query: 111    gcatgccttctgtgcaagcccgtatttcgagccctttgccattccattgcttttagataa 170
              ||||||||| ||| ||| ||| || || ||||| ||||| ||||| |||||| |||||||
Sbjct: 106816 gcatgccttttgttcaaccccatactttgagccatttgcaattcctttgcttctagataa 106875

                                      
Query: 171    actttcttcctctcttccattagc 194
              ||||||||||||||||||||||||
Sbjct: 106876 actttcttcctctcttccattagc 106899



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                   
Query: 272    ctatttggtttaagttgaaagaagtgctttttagcct 308
              |||||||||||||||||||||||||| | ||||||||
Sbjct: 107080 ctatttggtttaagttgaaagaagtgatatttagcct 107116



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                           
Query: 14     tttttgagattctgagcaaatattttcctgtctacttcacacatg 58
              |||||||||||||||| ||||||| |||  |||||||||||||||
Sbjct: 106439 tttttgagattctgagtaaatattatccgatctacttcacacatg 106483



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>dbj|AK064551.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-B12, full
            insert sequence
          Length = 1742

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                        
Query: 111  gcatgccttctgtgcaagcccgtatttcgagccctttgccattccattgcttttagataa 170
            ||||||||| ||| ||| ||| || || ||||| ||||| ||||| |||||| |||||||
Sbjct: 1646 gcatgccttttgttcaaccccatactttgagccatttgcaattcctttgcttctagataa 1705

                                    
Query: 171  actttcttcctctcttccattagc 194
            ||||||||||||||||||||||||
Sbjct: 1706 actttcttcctctcttccattagc 1729



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                         
Query: 14   tttttgagattctgagcaaatattttcctgtctacttcacacatg 58
            |||||||||||||||| ||||||| |||  |||||||||||||||
Sbjct: 1269 tttttgagattctgagtaaatattatccgatctacttcacacatg 1313



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>gb|AC098697.4| Rattus norvegicus strain Brown Norway clone RP31-387A21, complete
             sequence
          Length = 123000

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 168   taaactttcttcctctcttcca 189
             ||||||||||||||||||||||
Sbjct: 68642 taaactttcttcctctcttcca 68663



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>emb|AL806513.5| Mouse DNA sequence from clone RP23-480E16 on chromosome 4, complete
             sequence
          Length = 189780

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 17    ttgagattctgagcaaatattt 38
             ||||||||||||||||||||||
Sbjct: 34925 ttgagattctgagcaaatattt 34904



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>ref|XM_419792.1| PREDICTED: Gallus gallus similar to Protein KIAA0274 (LOC421762),
            mRNA
          Length = 3297

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  tttcttcctctcttccatta 192
            ||||||||||||||||||||
Sbjct: 3159 tttcttcctctcttccatta 3178



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>ref|XM_448462.1| Candida glabrata CBS138, CAGL0K05445g partial mRNA
          Length = 1812

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 21  gattctgagcaaatattttcctgt 44
           |||||||| |||||||||||||||
Sbjct: 773 gattctgaacaaatattttcctgt 750



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>gb|AC131794.3| Mus musculus BAC clone RP24-486P14 from chromosome 9, complete sequence
          Length = 166272

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    gagattctgagcaaatattt 38
             ||||||||||||||||||||
Sbjct: 89564 gagattctgagcaaatattt 89583



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>ref|XM_663096.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.50182)
           partial mRNA
          Length = 2649

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 161 ttttagataaactttcttcc 180
           ||||||||||||||||||||
Sbjct: 22  ttttagataaactttcttcc 3



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>emb|AL592295.25| Human DNA sequence from clone RP11-122G18 on chromosome 1 Contains the
             3' end of a novel gene, the MPZ gene for myelin protein
             zero (Charcot-Marie-Tooth neuropathy 1B), the SDHC gene
             for succinate dehydrogenase complex subunit C  integral
             membrane protein 15kDa, the gene for a novel protein, a
             novel gene, a pseudogene similar to part of ribonucleotide
             reductase M2 polypeptide (RRM2), a ribosomal protein S2
             (RPS2) pseudogene and two CpG islands, complete sequence
          Length = 162189

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 300   ttttagcctttcttcagatcaact 323
             ||||||||||||||||||| ||||
Sbjct: 96780 ttttagcctttcttcagatgaact 96803



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>emb|AL596266.3| Human DNA sequence from clone RP11-2L13 on chromosome 1 Contains a
              translational inhibitor protein p14.5 (UK114) pseudogene,
              complete sequence
          Length = 128479

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    ctttcttcctctcttccatt 191
              ||||||||||||||||||||
Sbjct: 100288 ctttcttcctctcttccatt 100307



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>gb|AC093450.20| Mus musculus strain C57BL/6J clone rp23-297j19 map 17, complete sequence
          Length = 202803

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    ataaactttcttcctctctt 186
              ||||||||||||||||||||
Sbjct: 182418 ataaactttcttcctctctt 182399



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>emb|CR380957.1| Candida glabrata strain CBS138 chromosome K complete sequence
          Length = 1302002

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 21     gattctgagcaaatattttcctgt 44
              |||||||| |||||||||||||||
Sbjct: 534623 gattctgaacaaatattttcctgt 534600



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>emb|BX901919.8| Zebrafish DNA sequence from clone DKEY-30I6 in linkage group 25,
             complete sequence
          Length = 233401

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 34    tattttcctgtctacttcacacat 57
             ||||||||||||| ||||||||||
Sbjct: 29707 tattttcctgtcttcttcacacat 29730



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>emb|AJ293568.1|YDI293568 Yaba-like disease virus (YLDV), complete genome
          Length = 144575

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 155   cattgcttttagataaactttctt 178
             ||||| ||||||||||||||||||
Sbjct: 69811 cattgtttttagataaactttctt 69788



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>emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in linkage group 25,
             complete sequence
          Length = 216800

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 34    tattttcctgtctacttcacacat 57
             ||||||||||||| ||||||||||
Sbjct: 80271 tattttcctgtcttcttcacacat 80248



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>emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 in linkage group 25,
              complete sequence
          Length = 204383

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 34     tattttcctgtctacttcacacat 57
              ||||||||||||| ||||||||||
Sbjct: 166762 tattttcctgtcttcttcacacat 166785



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>gb|AC153012.4| Mus musculus BAC clone RP23-302F19 from chromosome 9, complete sequence
          Length = 196764

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    gagattctgagcaaatattt 38
             ||||||||||||||||||||
Sbjct: 58329 gagattctgagcaaatattt 58348



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>gb|AC183527.2| Mus musculus BAC clone RP23-30G12 from chromosome 12, complete sequence
          Length = 208026

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 11    acttttttgagattctgagcaaat 34
             |||||||||||||||| |||||||
Sbjct: 29662 acttttttgagattcttagcaaat 29685



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>gb|U40029.1| Caenorhabditis elegans cosmid F10G7, complete sequence
          Length = 43675

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   tcttccattagcaaagcttg 202
             ||||||||||||||||||||
Sbjct: 38217 tcttccattagcaaagcttg 38236



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>gb|AC087543.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0068N06,
              complete sequence
          Length = 174019

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    tgctttttagcctttcttca 315
              ||||||||||||||||||||
Sbjct: 142782 tgctttttagcctttcttca 142763



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>gb|AC104072.3| Homo sapiens BAC clone RP11-320H14 from 4, complete sequence
          Length = 112494

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   ttcttcctctcttccattag 193
             ||||||||||||||||||||
Sbjct: 22161 ttcttcctctcttccattag 22142



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>gb|U23521.1| Caenorhabditis elegans cosmid F41C3, complete sequence
          Length = 38897

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 183  tcttccattagcaaagcttg 202
            ||||||||||||||||||||
Sbjct: 8142 tcttccattagcaaagcttg 8161



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>ref|XM_626140.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd5_1980),
           partial mRNA
          Length = 2649

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 161 ttttagataaactttcttcc 180
           ||||||||||||||||||||
Sbjct: 22  ttttagataaactttcttcc 3



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>ref|NM_182131.1| Caenorhabditis elegans F10G7.10c (F10G7.10) mRNA, complete cds
          Length = 5430

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  tcttccattagcaaagcttg 202
            ||||||||||||||||||||
Sbjct: 2396 tcttccattagcaaagcttg 2377



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>ref|NM_182130.2| Caenorhabditis elegans F10G7.10b (F10G7.10) mRNA, complete cds
          Length = 5723

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  tcttccattagcaaagcttg 202
            ||||||||||||||||||||
Sbjct: 2396 tcttccattagcaaagcttg 2377



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>ref|NM_062440.3| Caenorhabditis elegans F10G7.10a (F10G7.10) mRNA, complete cds
          Length = 6149

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  tcttccattagcaaagcttg 202
            ||||||||||||||||||||
Sbjct: 2396 tcttccattagcaaagcttg 2377



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 296      tgctttttagcctttcttca 315
                ||||||||||||||||||||
Sbjct: 15971258 tgctttttagcctttcttca 15971239



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>gb|AC093745.3| Homo sapiens BAC clone RP11-25B15 from 4, complete sequence
          Length = 166191

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   ttcttcctctcttccattag 193
             ||||||||||||||||||||
Sbjct: 15101 ttcttcctctcttccattag 15082



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>gb|AC145068.8| Mus musculus chromosome 8, clone RP23-197G5, complete sequence
          Length = 195178

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    tttcttcagatcaactttta 327
              ||||||||||||||||||||
Sbjct: 178373 tttcttcagatcaactttta 178354



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>gb|AC078927.20| Homo sapiens 12 BAC RP11-745O10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 125777

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   tttggtttaagttgaaagaa 294
             ||||||||||||||||||||
Sbjct: 23407 tttggtttaagttgaaagaa 23388



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>gb|AC108811.12| Mus musculus chromosome 8, clone RP23-284C19, complete sequence
          Length = 212270

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   tttcttcagatcaactttta 327
             ||||||||||||||||||||
Sbjct: 28208 tttcttcagatcaactttta 28189



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>gb|AC091777.26| Mus musculus strain C57BL/6J chromosome 17 clone rp23-355b17, complete
             sequence
          Length = 216109

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   ataaactttcttcctctctt 186
             ||||||||||||||||||||
Sbjct: 60509 ataaactttcttcctctctt 60490



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>gb|AC159315.4| Mus musculus BAC clone RP23-86H21 from chromosome 12, complete sequence
          Length = 233568

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     aaatattttcctgtctactt 50
              ||||||||||||||||||||
Sbjct: 192827 aaatattttcctgtctactt 192808



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>gb|AC160641.2| Ornithorhynchus anatinus BAC clone OABb-469P24 from chromosome unknown,
             complete sequence
          Length = 128941

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   ttccttaagatatttggaca 223
             ||||||||||||||||||||
Sbjct: 42209 ttccttaagatatttggaca 42190



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 296      tgctttttagcctttcttca 315
                ||||||||||||||||||||
Sbjct: 15979499 tgctttttagcctttcttca 15979480



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>gb|AC145954.3| Gallus gallus BAC clone CH261-13B2 from chromosome unknown, complete
            sequence
          Length = 192205

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  tttcttcctctcttccatta 192
            ||||||||||||||||||||
Sbjct: 4775 tttcttcctctcttccatta 4794



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>emb|CT025606.10| Mouse DNA sequence from clone RP24-120D14 on chromosome 12, complete
             sequence
          Length = 164251

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    acttttttgagattctgagcaaat 34
             |||||||||||||||| |||||||
Sbjct: 34304 acttttttgagattcttagcaaat 34281



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>emb|AL807252.5| Mouse DNA sequence from clone RP23-456B18 on chromosome 4, complete
             sequence
          Length = 195718

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    ctgtctacttcacacatgga 60
             ||||||||||||||||||||
Sbjct: 52487 ctgtctacttcacacatgga 52468



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>emb|AL590674.5| Human DNA sequence from clone RP11-286N24 on chromosome 1, complete
              sequence
          Length = 114056

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    ctttcttcctctcttccatt 191
              ||||||||||||||||||||
Sbjct: 100998 ctttcttcctctcttccatt 101017


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,092,482
Number of Sequences: 3902068
Number of extensions: 4092482
Number of successful extensions: 81157
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81015
Number of HSP's gapped (non-prelim): 142
length of query: 347
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 325
effective length of database: 17,147,199,772
effective search space: 5572839925900
effective search space used: 5572839925900
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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