Clone Name | bastl23a04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_476830.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3351 Score = 214 bits (108), Expect = 1e-52 Identities = 251/296 (84%), Gaps = 2/296 (0%) Strand = Plus / Plus Query: 14 tttttgagattctgagcaaatattttcctgtctacttcacacatggagccggtgataatt 73 |||||||||||||||| ||||||| ||| |||||||||||||||||| |||||| ||| Sbjct: 911 tttttgagattctgagtaaatattatccgatctacttcacacatggagtgggtgatgatt 970 Query: 74 taggtgttacaagagacgagctttctagggcattgatgcatgccttctgtgcaagcccgt 133 ||| || |||||| || || ||||||| |||| | ||||||||||| ||| ||| ||| | Sbjct: 971 tagatgctacaagggatgatctttctaaggcactaatgcatgccttttgttcaaccccat 1030 Query: 134 atttcgagccctttgccattccattgcttttagataaactttcttcctctcttccattag 193 | || ||||| ||||| ||||| |||||| |||||||||||||||||||||||||||||| Sbjct: 1031 actttgagccatttgcaattcctttgcttctagataaactttcttcctctcttccattag 1090 Query: 194 caaagcttgattccttaagatatttggacaattgcattcagtgctatggagctgatagaa 253 | ||||||||||| |||| |||| |||| |||||||| | |||||||| || || |||| Sbjct: 1091 ccaagcttgattctttaaaatatctggataattgcatccgctgctatggtgcagacagaa 1150 Query: 254 tggttgcacacg-catcagctatttggtttaagttgaaagaagtgctttttagcct 308 ||| | ||| | |||| |||||||||||||||||||||||||| | |||||||| Sbjct: 1151 tgggtagacatgtaatca-ctatttggtttaagttgaaagaagtgatatttagcct 1205
>dbj|AK070264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047J07, full insert sequence Length = 3350 Score = 214 bits (108), Expect = 1e-52 Identities = 251/296 (84%), Gaps = 2/296 (0%) Strand = Plus / Plus Query: 14 tttttgagattctgagcaaatattttcctgtctacttcacacatggagccggtgataatt 73 |||||||||||||||| ||||||| ||| |||||||||||||||||| |||||| ||| Sbjct: 910 tttttgagattctgagtaaatattatccgatctacttcacacatggagtgggtgatgatt 969 Query: 74 taggtgttacaagagacgagctttctagggcattgatgcatgccttctgtgcaagcccgt 133 ||| || |||||| || || ||||||| |||| | ||||||||||| ||| ||| ||| | Sbjct: 970 tagatgctacaagggatgatctttctaaggcactaatgcatgccttttgttcaaccccat 1029 Query: 134 atttcgagccctttgccattccattgcttttagataaactttcttcctctcttccattag 193 | || ||||| ||||| ||||| |||||| |||||||||||||||||||||||||||||| Sbjct: 1030 actttgagccatttgcaattcctttgcttctagataaactttcttcctctcttccattag 1089 Query: 194 caaagcttgattccttaagatatttggacaattgcattcagtgctatggagctgatagaa 253 | ||||||||||| |||| |||| |||| |||||||| | |||||||| || || |||| Sbjct: 1090 ccaagcttgattctttaaaatatctggataattgcatccgctgctatggtgcagacagaa 1149 Query: 254 tggttgcacacg-catcagctatttggtttaagttgaaagaagtgctttttagcct 308 ||| | ||| | |||| |||||||||||||||||||||||||| | |||||||| Sbjct: 1150 tgggtagacatgtaatca-ctatttggtttaagttgaaagaagtgatatttagcct 1204
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 87.7 bits (44), Expect = 2e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 111 gcatgccttctgtgcaagcccgtatttcgagccctttgccattccattgcttttagataa 170 ||||||||| ||| ||| ||| || || ||||| ||||| ||||| |||||| ||||||| Sbjct: 4113958 gcatgccttttgttcaaccccatactttgagccatttgcaattcctttgcttctagataa 4114017 Query: 171 actttcttcctctcttccattagc 194 |||||||||||||||||||||||| Sbjct: 4114018 actttcttcctctcttccattagc 4114041 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 272 ctatttggtttaagttgaaagaagtgctttttagcct 308 |||||||||||||||||||||||||| | |||||||| Sbjct: 4114222 ctatttggtttaagttgaaagaagtgatatttagcct 4114258 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 14 tttttgagattctgagcaaatattttcctgtctacttcacacatg 58 |||||||||||||||| ||||||| ||| ||||||||||||||| Sbjct: 4113581 tttttgagattctgagtaaatattatccgatctacttcacacatg 4113625
>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534H07 Length = 144689 Score = 87.7 bits (44), Expect = 2e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 111 gcatgccttctgtgcaagcccgtatttcgagccctttgccattccattgcttttagataa 170 ||||||||| ||| ||| ||| || || ||||| ||||| ||||| |||||| ||||||| Sbjct: 106816 gcatgccttttgttcaaccccatactttgagccatttgcaattcctttgcttctagataa 106875 Query: 171 actttcttcctctcttccattagc 194 |||||||||||||||||||||||| Sbjct: 106876 actttcttcctctcttccattagc 106899 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 272 ctatttggtttaagttgaaagaagtgctttttagcct 308 |||||||||||||||||||||||||| | |||||||| Sbjct: 107080 ctatttggtttaagttgaaagaagtgatatttagcct 107116 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 14 tttttgagattctgagcaaatattttcctgtctacttcacacatg 58 |||||||||||||||| ||||||| ||| ||||||||||||||| Sbjct: 106439 tttttgagattctgagtaaatattatccgatctacttcacacatg 106483
>dbj|AK064551.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-B12, full insert sequence Length = 1742 Score = 87.7 bits (44), Expect = 2e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 111 gcatgccttctgtgcaagcccgtatttcgagccctttgccattccattgcttttagataa 170 ||||||||| ||| ||| ||| || || ||||| ||||| ||||| |||||| ||||||| Sbjct: 1646 gcatgccttttgttcaaccccatactttgagccatttgcaattcctttgcttctagataa 1705 Query: 171 actttcttcctctcttccattagc 194 |||||||||||||||||||||||| Sbjct: 1706 actttcttcctctcttccattagc 1729 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 14 tttttgagattctgagcaaatattttcctgtctacttcacacatg 58 |||||||||||||||| ||||||| ||| ||||||||||||||| Sbjct: 1269 tttttgagattctgagtaaatattatccgatctacttcacacatg 1313
>gb|AC098697.4| Rattus norvegicus strain Brown Norway clone RP31-387A21, complete sequence Length = 123000 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 168 taaactttcttcctctcttcca 189 |||||||||||||||||||||| Sbjct: 68642 taaactttcttcctctcttcca 68663
>emb|AL806513.5| Mouse DNA sequence from clone RP23-480E16 on chromosome 4, complete sequence Length = 189780 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 17 ttgagattctgagcaaatattt 38 |||||||||||||||||||||| Sbjct: 34925 ttgagattctgagcaaatattt 34904
>ref|XM_419792.1| PREDICTED: Gallus gallus similar to Protein KIAA0274 (LOC421762), mRNA Length = 3297 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 tttcttcctctcttccatta 192 |||||||||||||||||||| Sbjct: 3159 tttcttcctctcttccatta 3178
>ref|XM_448462.1| Candida glabrata CBS138, CAGL0K05445g partial mRNA Length = 1812 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 gattctgagcaaatattttcctgt 44 |||||||| ||||||||||||||| Sbjct: 773 gattctgaacaaatattttcctgt 750
>gb|AC131794.3| Mus musculus BAC clone RP24-486P14 from chromosome 9, complete sequence Length = 166272 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 gagattctgagcaaatattt 38 |||||||||||||||||||| Sbjct: 89564 gagattctgagcaaatattt 89583
>ref|XM_663096.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.50182) partial mRNA Length = 2649 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ttttagataaactttcttcc 180 |||||||||||||||||||| Sbjct: 22 ttttagataaactttcttcc 3
>emb|AL592295.25| Human DNA sequence from clone RP11-122G18 on chromosome 1 Contains the 3' end of a novel gene, the MPZ gene for myelin protein zero (Charcot-Marie-Tooth neuropathy 1B), the SDHC gene for succinate dehydrogenase complex subunit C integral membrane protein 15kDa, the gene for a novel protein, a novel gene, a pseudogene similar to part of ribonucleotide reductase M2 polypeptide (RRM2), a ribosomal protein S2 (RPS2) pseudogene and two CpG islands, complete sequence Length = 162189 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 ttttagcctttcttcagatcaact 323 ||||||||||||||||||| |||| Sbjct: 96780 ttttagcctttcttcagatgaact 96803
>emb|AL596266.3| Human DNA sequence from clone RP11-2L13 on chromosome 1 Contains a translational inhibitor protein p14.5 (UK114) pseudogene, complete sequence Length = 128479 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ctttcttcctctcttccatt 191 |||||||||||||||||||| Sbjct: 100288 ctttcttcctctcttccatt 100307
>gb|AC093450.20| Mus musculus strain C57BL/6J clone rp23-297j19 map 17, complete sequence Length = 202803 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ataaactttcttcctctctt 186 |||||||||||||||||||| Sbjct: 182418 ataaactttcttcctctctt 182399
>emb|CR380957.1| Candida glabrata strain CBS138 chromosome K complete sequence Length = 1302002 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 gattctgagcaaatattttcctgt 44 |||||||| ||||||||||||||| Sbjct: 534623 gattctgaacaaatattttcctgt 534600
>emb|BX901919.8| Zebrafish DNA sequence from clone DKEY-30I6 in linkage group 25, complete sequence Length = 233401 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 tattttcctgtctacttcacacat 57 ||||||||||||| |||||||||| Sbjct: 29707 tattttcctgtcttcttcacacat 29730
>emb|AJ293568.1|YDI293568 Yaba-like disease virus (YLDV), complete genome Length = 144575 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 cattgcttttagataaactttctt 178 ||||| |||||||||||||||||| Sbjct: 69811 cattgtttttagataaactttctt 69788
>emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in linkage group 25, complete sequence Length = 216800 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 tattttcctgtctacttcacacat 57 ||||||||||||| |||||||||| Sbjct: 80271 tattttcctgtcttcttcacacat 80248
>emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 in linkage group 25, complete sequence Length = 204383 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 tattttcctgtctacttcacacat 57 ||||||||||||| |||||||||| Sbjct: 166762 tattttcctgtcttcttcacacat 166785
>gb|AC153012.4| Mus musculus BAC clone RP23-302F19 from chromosome 9, complete sequence Length = 196764 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 gagattctgagcaaatattt 38 |||||||||||||||||||| Sbjct: 58329 gagattctgagcaaatattt 58348
>gb|AC183527.2| Mus musculus BAC clone RP23-30G12 from chromosome 12, complete sequence Length = 208026 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 acttttttgagattctgagcaaat 34 |||||||||||||||| ||||||| Sbjct: 29662 acttttttgagattcttagcaaat 29685
>gb|U40029.1| Caenorhabditis elegans cosmid F10G7, complete sequence Length = 43675 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tcttccattagcaaagcttg 202 |||||||||||||||||||| Sbjct: 38217 tcttccattagcaaagcttg 38236
>gb|AC087543.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0068N06, complete sequence Length = 174019 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tgctttttagcctttcttca 315 |||||||||||||||||||| Sbjct: 142782 tgctttttagcctttcttca 142763
>gb|AC104072.3| Homo sapiens BAC clone RP11-320H14 from 4, complete sequence Length = 112494 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 ttcttcctctcttccattag 193 |||||||||||||||||||| Sbjct: 22161 ttcttcctctcttccattag 22142
>gb|U23521.1| Caenorhabditis elegans cosmid F41C3, complete sequence Length = 38897 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tcttccattagcaaagcttg 202 |||||||||||||||||||| Sbjct: 8142 tcttccattagcaaagcttg 8161
>ref|XM_626140.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd5_1980), partial mRNA Length = 2649 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ttttagataaactttcttcc 180 |||||||||||||||||||| Sbjct: 22 ttttagataaactttcttcc 3
>ref|NM_182131.1| Caenorhabditis elegans F10G7.10c (F10G7.10) mRNA, complete cds Length = 5430 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tcttccattagcaaagcttg 202 |||||||||||||||||||| Sbjct: 2396 tcttccattagcaaagcttg 2377
>ref|NM_182130.2| Caenorhabditis elegans F10G7.10b (F10G7.10) mRNA, complete cds Length = 5723 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tcttccattagcaaagcttg 202 |||||||||||||||||||| Sbjct: 2396 tcttccattagcaaagcttg 2377
>ref|NM_062440.3| Caenorhabditis elegans F10G7.10a (F10G7.10) mRNA, complete cds Length = 6149 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tcttccattagcaaagcttg 202 |||||||||||||||||||| Sbjct: 2396 tcttccattagcaaagcttg 2377
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tgctttttagcctttcttca 315 |||||||||||||||||||| Sbjct: 15971258 tgctttttagcctttcttca 15971239
>gb|AC093745.3| Homo sapiens BAC clone RP11-25B15 from 4, complete sequence Length = 166191 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 ttcttcctctcttccattag 193 |||||||||||||||||||| Sbjct: 15101 ttcttcctctcttccattag 15082
>gb|AC145068.8| Mus musculus chromosome 8, clone RP23-197G5, complete sequence Length = 195178 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tttcttcagatcaactttta 327 |||||||||||||||||||| Sbjct: 178373 tttcttcagatcaactttta 178354
>gb|AC078927.20| Homo sapiens 12 BAC RP11-745O10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125777 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 tttggtttaagttgaaagaa 294 |||||||||||||||||||| Sbjct: 23407 tttggtttaagttgaaagaa 23388
>gb|AC108811.12| Mus musculus chromosome 8, clone RP23-284C19, complete sequence Length = 212270 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tttcttcagatcaactttta 327 |||||||||||||||||||| Sbjct: 28208 tttcttcagatcaactttta 28189
>gb|AC091777.26| Mus musculus strain C57BL/6J chromosome 17 clone rp23-355b17, complete sequence Length = 216109 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 ataaactttcttcctctctt 186 |||||||||||||||||||| Sbjct: 60509 ataaactttcttcctctctt 60490
>gb|AC159315.4| Mus musculus BAC clone RP23-86H21 from chromosome 12, complete sequence Length = 233568 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 aaatattttcctgtctactt 50 |||||||||||||||||||| Sbjct: 192827 aaatattttcctgtctactt 192808
>gb|AC160641.2| Ornithorhynchus anatinus BAC clone OABb-469P24 from chromosome unknown, complete sequence Length = 128941 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ttccttaagatatttggaca 223 |||||||||||||||||||| Sbjct: 42209 ttccttaagatatttggaca 42190
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tgctttttagcctttcttca 315 |||||||||||||||||||| Sbjct: 15979499 tgctttttagcctttcttca 15979480
>gb|AC145954.3| Gallus gallus BAC clone CH261-13B2 from chromosome unknown, complete sequence Length = 192205 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 tttcttcctctcttccatta 192 |||||||||||||||||||| Sbjct: 4775 tttcttcctctcttccatta 4794
>emb|CT025606.10| Mouse DNA sequence from clone RP24-120D14 on chromosome 12, complete sequence Length = 164251 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 acttttttgagattctgagcaaat 34 |||||||||||||||| ||||||| Sbjct: 34304 acttttttgagattcttagcaaat 34281
>emb|AL807252.5| Mouse DNA sequence from clone RP23-456B18 on chromosome 4, complete sequence Length = 195718 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 ctgtctacttcacacatgga 60 |||||||||||||||||||| Sbjct: 52487 ctgtctacttcacacatgga 52468
>emb|AL590674.5| Human DNA sequence from clone RP11-286N24 on chromosome 1, complete sequence Length = 114056 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ctttcttcctctcttccatt 191 |||||||||||||||||||| Sbjct: 100998 ctttcttcctctcttccatt 101017 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,092,482 Number of Sequences: 3902068 Number of extensions: 4092482 Number of successful extensions: 81157 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81015 Number of HSP's gapped (non-prelim): 142 length of query: 347 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 325 effective length of database: 17,147,199,772 effective search space: 5572839925900 effective search space used: 5572839925900 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)