Clone Information

BLAST Search Result

Clone Name	bastl23a02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_476830.1\| Oryza sativa (japonica cultivar-group), mRNA	214	2e-52
2	dbj\|AK070264.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	214	2e-52
3	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	88	3e-14
4	dbj\|AP004307.2\| Oryza sativa (japonica cultivar-group) genomic D...	88	3e-14
5	dbj\|AK064551.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	88	3e-14
6	gb\|AC098697.4\| Rattus norvegicus strain Brown Norway clone RP31-...	44	0.39
7	emb\|AL806513.5\| Mouse DNA sequence from clone RP23-480E16 on chr...	44	0.39
8	gb\|AC159316.3\| Mus musculus BAC clone RP23-93F3 from chromosome ...	42	1.5
9	emb\|AL161636.21\| Human DNA sequence from clone RP1-140J1 on chro...	42	1.5
10	emb\|AL157787.11\| Human DNA sequence from clone RP11-328K1 on chr...	42	1.5
11	gb\|AC011419.7\| Homo sapiens chromosome 5 clone CTD-2029I9, compl...	42	1.5
12	gb\|AC008051.3\|F19C14 Sequence of BAC F19C14 from Arabidopsis tha...	42	1.5
13	dbj\|AB077822.1\| Arabidopsis thaliana genomic DNA, chromosome 1, ...	42	1.5
14	emb\|BX537308.18\| Zebrafish DNA sequence from clone DKEY-231A18 i...	42	1.5
15	gb\|AC151760.1\| Ornithorhynchus anatinus chromosome UNK clone OAB...	40	6.0
16	ref\|XM_419792.1\| PREDICTED: Gallus gallus similar to Protein KIA...	40	6.0
17	ref\|XM_448462.1\| Candida glabrata CBS138, CAGL0K05445g partial mRNA	40	6.0
18	gb\|AC131794.3\| Mus musculus BAC clone RP24-486P14 from chromosom...	40	6.0
19	ref\|XM_663096.1\| Cryptosporidium hominis TU502 hypothetical prot...	40	6.0
20	emb\|AL592295.25\| Human DNA sequence from clone RP11-122G18 on ch...	40	6.0
21	emb\|AL596266.3\| Human DNA sequence from clone RP11-2L13 on chrom...	40	6.0
22	gb\|AC093450.20\| Mus musculus strain C57BL/6J clone rp23-297j19 m...	40	6.0
23	emb\|CR380957.1\| Candida glabrata strain CBS138 chromosome K comp...	40	6.0
24	emb\|BX294014.1\|NCB11O8 Neurospora crassa DNA linkage group V BAC...	40	6.0
25	emb\|BX901919.8\| Zebrafish DNA sequence from clone DKEY-30I6 in l...	40	6.0
26	emb\|AJ293568.1\|YDI293568 Yaba-like disease virus (YLDV), complet...	40	6.0
27	emb\|BX908783.8\| Zebrafish DNA sequence from clone DKEY-86M2 in l...	40	6.0
28	emb\|BX323796.14\| Zebrafish DNA sequence from clone DKEY-106N21 i...	40	6.0
29	gb\|AC153012.4\| Mus musculus BAC clone RP23-302F19 from chromosom...	40	6.0
30	gb\|AC159890.2\| Mus musculus BAC clone RP24-80J11 from chromosome...	40	6.0
31	gb\|AC103993.8\| Homo sapiens chromosome 8, clone RP11-67H2, compl...	40	6.0
32	gb\|AC183527.2\| Mus musculus BAC clone RP23-30G12 from chromosome...	40	6.0
33	gb\|U40029.1\| Caenorhabditis elegans cosmid F10G7, complete sequence	40	6.0
34	gb\|AC087543.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.0
35	gb\|AC104072.3\| Homo sapiens BAC clone RP11-320H14 from 4, comple...	40	6.0
36	gb\|U23521.1\| Caenorhabditis elegans cosmid F41C3, complete sequence	40	6.0
37	ref\|XM_626140.1\| Cryptosporidium parvum Iowa II hypothetical pro...	40	6.0
38	ref\|NM_182131.1\| Caenorhabditis elegans F10G7.10c (F10G7.10) mRN...	40	6.0
39	ref\|NM_182130.2\| Caenorhabditis elegans F10G7.10b (F10G7.10) mRN...	40	6.0
40	ref\|NM_062440.3\| Caenorhabditis elegans F10G7.10a (F10G7.10) mRN...	40	6.0
41	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
42	gb\|AC093745.3\| Homo sapiens BAC clone RP11-25B15 from 4, complet...	40	6.0
43	gb\|AC145068.8\| Mus musculus chromosome 8, clone RP23-197G5, comp...	40	6.0
44	gb\|AC084341.17\| Homo sapiens chromosome 8, clone RP11-760J15, co...	40	6.0
45	dbj\|AB024036.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	6.0
46	gb\|AC078927.20\| Homo sapiens 12 BAC RP11-745O10 (Roswell Park Ca...	40	6.0
47	gb\|L43967.2\| Mycoplasma genitalium G37, complete genome	40	6.0
48	gb\|AC108811.12\| Mus musculus chromosome 8, clone RP23-284C19, co...	40	6.0
49	gb\|AC157768.4\| Mus musculus chromosome 1, clone RP24-308M3, comp...	40	6.0
50	gb\|AC091777.26\| Mus musculus strain C57BL/6J chromosome 17 clone...	40	6.0
51	dbj\|AP005355.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	6.0
52	gb\|AC159315.4\| Mus musculus BAC clone RP23-86H21 from chromosome...	40	6.0
53	gb\|AC160641.2\| Ornithorhynchus anatinus BAC clone OABb-469P24 fr...	40	6.0
54	gb\|AC104896.13\| Mus musculus chromosome 1, clone RP23-299F18, co...	40	6.0
55	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.0
56	emb\|CT030644.8\| Mouse DNA sequence from clone RP24-82E11 on chro...	40	6.0
57	gb\|AC145954.3\| Gallus gallus BAC clone CH261-13B2 from chromosom...	40	6.0
58	emb\|CT025606.10\| Mouse DNA sequence from clone RP24-120D14 on ch...	40	6.0
59	emb\|AL807252.5\| Mouse DNA sequence from clone RP23-456B18 on chr...	40	6.0
60	emb\|AL590674.5\| Human DNA sequence from clone RP11-286N24 on chr...	40	6.0

>ref|XM_476830.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3351

 Score =  214 bits (108), Expect = 2e-52
 Identities = 251/296 (84%), Gaps = 2/296 (0%)
 Strand = Plus / Plus

                                                                        
Query: 13   tttttgagattctgagcaaatattttcctgtctacttcacacatggagccggtgataatt 72
            |||||||||||||||| ||||||| |||  ||||||||||||||||||  |||||| |||
Sbjct: 911  tttttgagattctgagtaaatattatccgatctacttcacacatggagtgggtgatgatt 970

                                                                        
Query: 73   taggtgttacaagagacgagctttctagggcattgatgcatgccttctgtgcaagcccgt 132
            ||| || |||||| || || ||||||| |||| | ||||||||||| ||| ||| ||| |
Sbjct: 971  tagatgctacaagggatgatctttctaaggcactaatgcatgccttttgttcaaccccat 1030

                                                                        
Query: 133  atttcgagccctttgccattccattgcttttagataaactttcttcctctcttccattag 192
            | || ||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 1031 actttgagccatttgcaattcctttgcttctagataaactttcttcctctcttccattag 1090

                                                                        
Query: 193  caaagcttgattccttaagatatttggacaattgcattcagtgctatggagctgatagaa 252
            | ||||||||||| |||| |||| |||| |||||||| |  |||||||| || || ||||
Sbjct: 1091 ccaagcttgattctttaaaatatctggataattgcatccgctgctatggtgcagacagaa 1150

                                                                    
Query: 253  tggttgcacacg-catcagctatttggtttaagttgaaagaagtgctttttagcct 307
            ||| |  ||| |  |||| |||||||||||||||||||||||||| | ||||||||
Sbjct: 1151 tgggtagacatgtaatca-ctatttggtttaagttgaaagaagtgatatttagcct 1205



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 351  gagaataataagaatgaaataatatcagaagct 383
            ||||| ||||||||||||||| |||||||||||
Sbjct: 1249 gagaagaataagaatgaaatagtatcagaagct 1281

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>dbj|AK070264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047J07, full
            insert sequence
          Length = 3350

 Score =  214 bits (108), Expect = 2e-52
 Identities = 251/296 (84%), Gaps = 2/296 (0%)
 Strand = Plus / Plus

                                                                        
Query: 13   tttttgagattctgagcaaatattttcctgtctacttcacacatggagccggtgataatt 72
            |||||||||||||||| ||||||| |||  ||||||||||||||||||  |||||| |||
Sbjct: 910  tttttgagattctgagtaaatattatccgatctacttcacacatggagtgggtgatgatt 969

                                                                        
Query: 73   taggtgttacaagagacgagctttctagggcattgatgcatgccttctgtgcaagcccgt 132
            ||| || |||||| || || ||||||| |||| | ||||||||||| ||| ||| ||| |
Sbjct: 970  tagatgctacaagggatgatctttctaaggcactaatgcatgccttttgttcaaccccat 1029

                                                                        
Query: 133  atttcgagccctttgccattccattgcttttagataaactttcttcctctcttccattag 192
            | || ||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 1030 actttgagccatttgcaattcctttgcttctagataaactttcttcctctcttccattag 1089

                                                                        
Query: 193  caaagcttgattccttaagatatttggacaattgcattcagtgctatggagctgatagaa 252
            | ||||||||||| |||| |||| |||| |||||||| |  |||||||| || || ||||
Sbjct: 1090 ccaagcttgattctttaaaatatctggataattgcatccgctgctatggtgcagacagaa 1149

                                                                    
Query: 253  tggttgcacacg-catcagctatttggtttaagttgaaagaagtgctttttagcct 307
            ||| |  ||| |  |||| |||||||||||||||||||||||||| | ||||||||
Sbjct: 1150 tgggtagacatgtaatca-ctatttggtttaagttgaaagaagtgatatttagcct 1204



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 351  gagaataataagaatgaaataatatcagaagct 383
            ||||| ||||||||||||||| |||||||||||
Sbjct: 1248 gagaagaataagaatgaaatagtatcagaagct 1280

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                           
Query: 110     gcatgccttctgtgcaagcccgtatttcgagccctttgccattccattgcttttagataa 169
               ||||||||| ||| ||| ||| || || ||||| ||||| ||||| |||||| |||||||
Sbjct: 4113958 gcatgccttttgttcaaccccatactttgagccatttgcaattcctttgcttctagataa 4114017

                                       
Query: 170     actttcttcctctcttccattagc 193
               ||||||||||||||||||||||||
Sbjct: 4114018 actttcttcctctcttccattagc 4114041



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                    
Query: 271     ctatttggtttaagttgaaagaagtgctttttagcct 307
               |||||||||||||||||||||||||| | ||||||||
Sbjct: 4114222 ctatttggtttaagttgaaagaagtgatatttagcct 4114258



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 13      tttttgagattctgagcaaatattttcctgtctacttcacacatg 57
               |||||||||||||||| ||||||| |||  |||||||||||||||
Sbjct: 4113581 tttttgagattctgagtaaatattatccgatctacttcacacatg 4113625



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                
Query: 351     gagaataataagaatgaaataatatcagaagct 383
               ||||| ||||||||||||||| |||||||||||
Sbjct: 4114302 gagaagaataagaatgaaatagtatcagaagct 4114334

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>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0534H07
          Length = 144689

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                          
Query: 110    gcatgccttctgtgcaagcccgtatttcgagccctttgccattccattgcttttagataa 169
              ||||||||| ||| ||| ||| || || ||||| ||||| ||||| |||||| |||||||
Sbjct: 106816 gcatgccttttgttcaaccccatactttgagccatttgcaattcctttgcttctagataa 106875

                                      
Query: 170    actttcttcctctcttccattagc 193
              ||||||||||||||||||||||||
Sbjct: 106876 actttcttcctctcttccattagc 106899



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                   
Query: 271    ctatttggtttaagttgaaagaagtgctttttagcct 307
              |||||||||||||||||||||||||| | ||||||||
Sbjct: 107080 ctatttggtttaagttgaaagaagtgatatttagcct 107116



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                           
Query: 13     tttttgagattctgagcaaatattttcctgtctacttcacacatg 57
              |||||||||||||||| ||||||| |||  |||||||||||||||
Sbjct: 106439 tttttgagattctgagtaaatattatccgatctacttcacacatg 106483



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 351    gagaataataagaatgaaataatatcagaagct 383
              ||||| ||||||||||||||| |||||||||||
Sbjct: 107160 gagaagaataagaatgaaatagtatcagaagct 107192

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>dbj|AK064551.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-B12, full
            insert sequence
          Length = 1742

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                        
Query: 110  gcatgccttctgtgcaagcccgtatttcgagccctttgccattccattgcttttagataa 169
            ||||||||| ||| ||| ||| || || ||||| ||||| ||||| |||||| |||||||
Sbjct: 1646 gcatgccttttgttcaaccccatactttgagccatttgcaattcctttgcttctagataa 1705

                                    
Query: 170  actttcttcctctcttccattagc 193
            ||||||||||||||||||||||||
Sbjct: 1706 actttcttcctctcttccattagc 1729



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                         
Query: 13   tttttgagattctgagcaaatattttcctgtctacttcacacatg 57
            |||||||||||||||| ||||||| |||  |||||||||||||||
Sbjct: 1269 tttttgagattctgagtaaatattatccgatctacttcacacatg 1313

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>gb|AC098697.4| Rattus norvegicus strain Brown Norway clone RP31-387A21, complete
             sequence
          Length = 123000

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 167   taaactttcttcctctcttcca 188
             ||||||||||||||||||||||
Sbjct: 68642 taaactttcttcctctcttcca 68663

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>emb|AL806513.5| Mouse DNA sequence from clone RP23-480E16 on chromosome 4, complete
             sequence
          Length = 189780

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 16    ttgagattctgagcaaatattt 37
             ||||||||||||||||||||||
Sbjct: 34925 ttgagattctgagcaaatattt 34904

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>gb|AC159316.3| Mus musculus BAC clone RP23-93F3 from chromosome 8, complete sequence
          Length = 240812

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 348   gcagagaataataagaatgaa 368
             |||||||||||||||||||||
Sbjct: 97617 gcagagaataataagaatgaa 97597

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>emb|AL161636.21| Human DNA sequence from clone RP1-140J1 on chromosome 1 Contains a
             novel gene, two novel small proline rich proteins, a
             ribosomal protein, large, P0 (RPLP0) pseudogene, the  LOR
             gene for loricri and the 3' end of the PGLYRPIalpha gene
             for peptidoglycan recognition protein-I-alpha, complete
             sequence
          Length = 137712

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 340   ctaaagatgcagagaataataagaa 364
             ||||||||||| |||||||||||||
Sbjct: 28926 ctaaagatgcaaagaataataagaa 28950

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>emb|AL157787.11| Human DNA sequence from clone RP11-328K1 on chromosome 10, complete
             sequence
          Length = 102198

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 352   agaataataagaatgaaataa 372
             |||||||||||||||||||||
Sbjct: 42785 agaataataagaatgaaataa 42765

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>gb|AC011419.7| Homo sapiens chromosome 5 clone CTD-2029I9, complete sequence
          Length = 145435

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 359   taagaatgaaataatatcagaagct 383
             ||||||||||||||||||| |||||
Sbjct: 55534 taagaatgaaataatatcaaaagct 55510

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>gb|AC008051.3|F19C14 Sequence of BAC F19C14 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 86014

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 366   gaaataatatcagaagctaaa 386
             |||||||||||||||||||||
Sbjct: 18129 gaaataatatcagaagctaaa 18149

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>dbj|AB077822.1| Arabidopsis thaliana genomic DNA, chromosome 1, P1 clone:X7J,
           complete sequence
          Length = 77636

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 366 gaaataatatcagaagctaaa 386
           |||||||||||||||||||||
Sbjct: 301 gaaataatatcagaagctaaa 281

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>emb|BX537308.18| Zebrafish DNA sequence from clone DKEY-231A18 in linkage group 4,
              complete sequence
          Length = 191880

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 352    agaataataagaatgaaataa 372
              |||||||||||||||||||||
Sbjct: 104651 agaataataagaatgaaataa 104671

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>gb|AC151760.1| Ornithorhynchus anatinus chromosome UNK clone OABb-456A1, complete
             sequence
          Length = 142934

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 344   agatgcagagaataataagaatgaaata 371
             ||||||||| || |||||||||||||||
Sbjct: 20120 agatgcagaaaacaataagaatgaaata 20093

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>ref|XM_419792.1| PREDICTED: Gallus gallus similar to Protein KIAA0274 (LOC421762),
            mRNA
          Length = 3297

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  tttcttcctctcttccatta 191
            ||||||||||||||||||||
Sbjct: 3159 tttcttcctctcttccatta 3178

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>ref|XM_448462.1| Candida glabrata CBS138, CAGL0K05445g partial mRNA
          Length = 1812

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 20  gattctgagcaaatattttcctgt 43
           |||||||| |||||||||||||||
Sbjct: 773 gattctgaacaaatattttcctgt 750

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>gb|AC131794.3| Mus musculus BAC clone RP24-486P14 from chromosome 9, complete sequence
          Length = 166272

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    gagattctgagcaaatattt 37
             ||||||||||||||||||||
Sbjct: 89564 gagattctgagcaaatattt 89583

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>ref|XM_663096.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.50182)
           partial mRNA
          Length = 2649

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttttagataaactttcttcc 179
           ||||||||||||||||||||
Sbjct: 22  ttttagataaactttcttcc 3

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>emb|AL592295.25| Human DNA sequence from clone RP11-122G18 on chromosome 1 Contains the
             3' end of a novel gene, the MPZ gene for myelin protein
             zero (Charcot-Marie-Tooth neuropathy 1B), the SDHC gene
             for succinate dehydrogenase complex subunit C  integral
             membrane protein 15kDa, the gene for a novel protein, a
             novel gene, a pseudogene similar to part of ribonucleotide
             reductase M2 polypeptide (RRM2), a ribosomal protein S2
             (RPS2) pseudogene and two CpG islands, complete sequence
          Length = 162189

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 299   ttttagcctttcttcagatcaact 322
             ||||||||||||||||||| ||||
Sbjct: 96780 ttttagcctttcttcagatgaact 96803

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>emb|AL596266.3| Human DNA sequence from clone RP11-2L13 on chromosome 1 Contains a
              translational inhibitor protein p14.5 (UK114) pseudogene,
              complete sequence
          Length = 128479

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    ctttcttcctctcttccatt 190
              ||||||||||||||||||||
Sbjct: 100288 ctttcttcctctcttccatt 100307

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>gb|AC093450.20| Mus musculus strain C57BL/6J clone rp23-297j19 map 17, complete sequence
          Length = 202803

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    ataaactttcttcctctctt 185
              ||||||||||||||||||||
Sbjct: 182418 ataaactttcttcctctctt 182399

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>emb|CR380957.1| Candida glabrata strain CBS138 chromosome K complete sequence
          Length = 1302002

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 20     gattctgagcaaatattttcctgt 43
              |||||||| |||||||||||||||
Sbjct: 534623 gattctgaacaaatattttcctgt 534600

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>emb|BX294014.1|NCB11O8 Neurospora crassa DNA linkage group V BAC contig B11O8
          Length = 93850

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   cagggtcacctaaagatgca 350
             ||||||||||||||||||||
Sbjct: 85548 cagggtcacctaaagatgca 85567

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>emb|BX901919.8| Zebrafish DNA sequence from clone DKEY-30I6 in linkage group 25,
             complete sequence
          Length = 233401

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 33    tattttcctgtctacttcacacat 56
             ||||||||||||| ||||||||||
Sbjct: 29707 tattttcctgtcttcttcacacat 29730

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>emb|AJ293568.1|YDI293568 Yaba-like disease virus (YLDV), complete genome
          Length = 144575

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 154   cattgcttttagataaactttctt 177
             ||||| ||||||||||||||||||
Sbjct: 69811 cattgtttttagataaactttctt 69788

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>emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in linkage group 25,
             complete sequence
          Length = 216800

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    tattttcctgtctacttcacacat 56
             ||||||||||||| ||||||||||
Sbjct: 80271 tattttcctgtcttcttcacacat 80248

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>emb|BX323796.14| Zebrafish DNA sequence from clone DKEY-106N21 in linkage group 25,
              complete sequence
          Length = 204383

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 33     tattttcctgtctacttcacacat 56
              ||||||||||||| ||||||||||
Sbjct: 166762 tattttcctgtcttcttcacacat 166785

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>gb|AC153012.4| Mus musculus BAC clone RP23-302F19 from chromosome 9, complete sequence
          Length = 196764

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    gagattctgagcaaatattt 37
             ||||||||||||||||||||
Sbjct: 58329 gagattctgagcaaatattt 58348

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>gb|AC159890.2| Mus musculus BAC clone RP24-80J11 from chromosome 9, complete sequence
          Length = 226770

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 355    ataataagaatgaaataata 374
              ||||||||||||||||||||
Sbjct: 208286 ataataagaatgaaataata 208305

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>gb|AC103993.8| Homo sapiens chromosome 8, clone RP11-67H2, complete sequence
          Length = 147742

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   aataagaatgaaataatatc 376
             ||||||||||||||||||||
Sbjct: 16203 aataagaatgaaataatatc 16222

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>gb|AC183527.2| Mus musculus BAC clone RP23-30G12 from chromosome 12, complete sequence
          Length = 208026

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 10    acttttttgagattctgagcaaat 33
             |||||||||||||||| |||||||
Sbjct: 29662 acttttttgagattcttagcaaat 29685

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>gb|U40029.1| Caenorhabditis elegans cosmid F10G7, complete sequence
          Length = 43675

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   tcttccattagcaaagcttg 201
             ||||||||||||||||||||
Sbjct: 38217 tcttccattagcaaagcttg 38236

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>gb|AC087543.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0068N06,
              complete sequence
          Length = 174019

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 295    tgctttttagcctttcttca 314
              ||||||||||||||||||||
Sbjct: 142782 tgctttttagcctttcttca 142763

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>gb|AC104072.3| Homo sapiens BAC clone RP11-320H14 from 4, complete sequence
          Length = 112494

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   ttcttcctctcttccattag 192
             ||||||||||||||||||||
Sbjct: 22161 ttcttcctctcttccattag 22142

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>gb|U23521.1| Caenorhabditis elegans cosmid F41C3, complete sequence
          Length = 38897

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  tcttccattagcaaagcttg 201
            ||||||||||||||||||||
Sbjct: 8142 tcttccattagcaaagcttg 8161

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>ref|XM_626140.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd5_1980),
           partial mRNA
          Length = 2649

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 ttttagataaactttcttcc 179
           ||||||||||||||||||||
Sbjct: 22  ttttagataaactttcttcc 3

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>ref|NM_182131.1| Caenorhabditis elegans F10G7.10c (F10G7.10) mRNA, complete cds
          Length = 5430

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  tcttccattagcaaagcttg 201
            ||||||||||||||||||||
Sbjct: 2396 tcttccattagcaaagcttg 2377

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>ref|NM_182130.2| Caenorhabditis elegans F10G7.10b (F10G7.10) mRNA, complete cds
          Length = 5723

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  tcttccattagcaaagcttg 201
            ||||||||||||||||||||
Sbjct: 2396 tcttccattagcaaagcttg 2377

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>ref|NM_062440.3| Caenorhabditis elegans F10G7.10a (F10G7.10) mRNA, complete cds
          Length = 6149

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  tcttccattagcaaagcttg 201
            ||||||||||||||||||||
Sbjct: 2396 tcttccattagcaaagcttg 2377

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 295      tgctttttagcctttcttca 314
                ||||||||||||||||||||
Sbjct: 15971258 tgctttttagcctttcttca 15971239

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>gb|AC093745.3| Homo sapiens BAC clone RP11-25B15 from 4, complete sequence
          Length = 166191

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   ttcttcctctcttccattag 192
             ||||||||||||||||||||
Sbjct: 15101 ttcttcctctcttccattag 15082

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>gb|AC145068.8| Mus musculus chromosome 8, clone RP23-197G5, complete sequence
          Length = 195178

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    tttcttcagatcaactttta 326
              ||||||||||||||||||||
Sbjct: 178373 tttcttcagatcaactttta 178354

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>gb|AC084341.17| Homo sapiens chromosome 8, clone RP11-760J15, complete sequence
          Length = 141058

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    aataagaatgaaataatatc 376
              ||||||||||||||||||||
Sbjct: 135357 aataagaatgaaataatatc 135376

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>dbj|AB024036.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQC12
          Length = 87799

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 350   agagaataataagaatgaaataat 373
             ||||||||||||| ||||||||||
Sbjct: 78607 agagaataataagtatgaaataat 78630

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>gb|AC078927.20| Homo sapiens 12 BAC RP11-745O10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 125777

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   tttggtttaagttgaaagaa 293
             ||||||||||||||||||||
Sbjct: 23407 tttggtttaagttgaaagaa 23388

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>gb|L43967.2| Mycoplasma genitalium G37, complete genome
          Length = 580076

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    gaataataagaatgaaataa 372
              ||||||||||||||||||||
Sbjct: 113095 gaataataagaatgaaataa 113114

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>gb|AC108811.12| Mus musculus chromosome 8, clone RP23-284C19, complete sequence
          Length = 212270

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   tttcttcagatcaactttta 326
             ||||||||||||||||||||
Sbjct: 28208 tttcttcagatcaactttta 28189

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>gb|AC157768.4| Mus musculus chromosome 1, clone RP24-308M3, complete sequence
          Length = 202770

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 376    cagaagctaaacattgcttg 395
              ||||||||||||||||||||
Sbjct: 164292 cagaagctaaacattgcttg 164311

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>gb|AC091777.26| Mus musculus strain C57BL/6J chromosome 17 clone rp23-355b17, complete
             sequence
          Length = 216109

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   ataaactttcttcctctctt 185
             ||||||||||||||||||||
Sbjct: 60509 ataaactttcttcctctctt 60490

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>dbj|AP005355.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1189A8, complete
             sequence
          Length = 151101

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   aataagaatgaaataatatc 376
             ||||||||||||||||||||
Sbjct: 27900 aataagaatgaaataatatc 27919

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>gb|AC159315.4| Mus musculus BAC clone RP23-86H21 from chromosome 12, complete sequence
          Length = 233568

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     aaatattttcctgtctactt 49
              ||||||||||||||||||||
Sbjct: 192827 aaatattttcctgtctactt 192808

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>gb|AC160641.2| Ornithorhynchus anatinus BAC clone OABb-469P24 from chromosome unknown,
             complete sequence
          Length = 128941

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   ttccttaagatatttggaca 222
             ||||||||||||||||||||
Sbjct: 42209 ttccttaagatatttggaca 42190

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>gb|AC104896.13| Mus musculus chromosome 1, clone RP23-299F18, complete sequence
          Length = 184316

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   cagaagctaaacattgcttg 395
             ||||||||||||||||||||
Sbjct: 95742 cagaagctaaacattgcttg 95723

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 295      tgctttttagcctttcttca 314
                ||||||||||||||||||||
Sbjct: 15979499 tgctttttagcctttcttca 15979480

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>emb|CT030644.8| Mouse DNA sequence from clone RP24-82E11 on chromosome 9, complete
              sequence
          Length = 211707

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 355    ataataagaatgaaataata 374
              ||||||||||||||||||||
Sbjct: 147382 ataataagaatgaaataata 147401

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>gb|AC145954.3| Gallus gallus BAC clone CH261-13B2 from chromosome unknown, complete
            sequence
          Length = 192205

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  tttcttcctctcttccatta 191
            ||||||||||||||||||||
Sbjct: 4775 tttcttcctctcttccatta 4794

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>emb|CT025606.10| Mouse DNA sequence from clone RP24-120D14 on chromosome 12, complete
             sequence
          Length = 164251

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    acttttttgagattctgagcaaat 33
             |||||||||||||||| |||||||
Sbjct: 34304 acttttttgagattcttagcaaat 34281

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>emb|AL807252.5| Mouse DNA sequence from clone RP23-456B18 on chromosome 4, complete
             sequence
          Length = 195718

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    ctgtctacttcacacatgga 59
             ||||||||||||||||||||
Sbjct: 52487 ctgtctacttcacacatgga 52468

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>emb|AL590674.5| Human DNA sequence from clone RP11-286N24 on chromosome 1, complete
              sequence
          Length = 114056

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    ctttcttcctctcttccatt 190
              ||||||||||||||||||||
Sbjct: 100998 ctttcttcctctcttccatt 101017


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,883,129
Number of Sequences: 3902068
Number of extensions: 5883129
Number of successful extensions: 125201
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124928
Number of HSP's gapped (non-prelim): 273
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result