ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl22h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL354920.21| Human DNA sequence from clone RP11-522I20 on ch... 50 0.004
2ref|NM_001003658.2| Bos taurus EIF5A protein (EIF5A), mRNA 48 0.014
3gb|BC108135.1| Bos taurus EIF5A protein, mRNA (cDNA clone MGC:12... 48 0.014
4ref|XM_466929.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.22
5gb|AC137693.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.22
6emb|Z48149.1|SCCHRXV44 S.cerevisiae chromosome XV DNA (44 kb fra... 44 0.22
7gb|AC109644.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.22
8gb|AC144559.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.22
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
11dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
12dbj|AK111694.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.22
13dbj|AK111589.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.22
14emb|Z74854.1|SCYOL112W S.cerevisiae chromosome XV reading frame ... 44 0.22
15gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.22
16emb|BX294125.5| Mouse DNA sequence from clone RP24-129F5 on chro... 44 0.22
17gb|AC108321.5| Rattus norvegicus BAC CH230-261E4 (Children's Hos... 42 0.88
18ref|NM_002208.3| Homo sapiens integrin, alpha E (antigen CD103, ... 42 0.88
19gb|AC023174.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 0.88
20gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.88
21gb|AC084389.1| Mus musculus BAC clone RP23-247A1 from 1, complet... 42 0.88
22emb|AL133402.10| Human DNA sequence from clone RP5-1077H22 on ch... 42 0.88
23emb|AL096855.48|HS1115A15 Human DNA sequence from clone RP5-1115... 42 0.88
24gb|AY907537.1| Uncultured bacterial symbiont of Discodermia diss... 42 0.88
25emb|AL929371.6| Mouse DNA sequence from clone RP23-176O5 on chro... 42 0.88
26gb|AC116914.5| Homo sapiens chromosome 17, clone CTD-3195I5, com... 42 0.88
27gb|AC012588.14| Homo sapiens chromosome 18, clone RP11-17A19, co... 42 0.88
28gb|AC090206.7| Homo sapiens chromosome 18, clone RP11-349H17, co... 42 0.88
29gb|AC118269.6| Homo sapiens chromosome 17, clone CTD-2383D6, com... 42 0.88
30gb|AC009643.8| Homo sapiens chromosome 11, clone RP11-111A24, co... 42 0.88
31gb|AF325500.1|AF325500 Antheraea yamamai transposon mariner-like... 42 0.88
32gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 0.88
33dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.88
34gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.88
35ref|XM_238325.3| PREDICTED: Rattus norvegicus similar to mKIAA00... 42 0.88
36gb|AF168787.1|AF168787 Homo sapiens vanilloid receptor gene, par... 42 0.88
37gb|L25851.2|HUMINAE Homo sapiens integrin alpha E precursor, mRN... 42 0.88
38emb|AL844553.4| Mouse DNA sequence from clone RP23-255J15 on chr... 42 0.88
39emb|AL627235.12| Mouse DNA sequence from clone RP23-324C12 on ch... 42 0.88
40gb|AC164079.11| Mus musculus chromosome 1, clone RP23-15E12, com... 40 3.5
41gb|AC166986.4| Mus musculus chromosome 1, clone RP24-184H22, com... 40 3.5
42gb|AC140465.2| Mus musculus BAC clone RP24-389J3 from chromosome... 40 3.5
43emb|CR626888.9| Zebrafish DNA sequence from clone CH211-250B7 in... 40 3.5
44ref|XM_745581.1| Aspergillus fumigatus Af293 stromal membrane-as... 40 3.5
45gb|AC007335.7| Homo sapiens chromosome 16 clone RP11-165M2, comp... 40 3.5
46gb|AC113096.12| Mus musculus chromosome 14, clone RP23-312M23, c... 40 3.5
47ref|XM_546089.2| PREDICTED: Canis familiaris similar to egl nine... 40 3.5
48gb|AC051649.21| Homo sapiens chromosome 11, clone RP11-534I22, c... 40 3.5
49gb|AC020766.10| Homo sapiens chromosome 16 clone RP11-70N16, com... 40 3.5
50dbj|AK220436.1| Mus musculus mRNA for mKIAA2001 protein 40 3.5
51gb|AC113370.2| Homo sapiens chromosome 5 clone RP11-124O5, compl... 40 3.5
52ref|NM_183318.1| Mus musculus retrotransposon gag domain contain... 40 3.5
53gb|AC087274.8| Homo sapiens chromosome 8, clone RP11-681J6, comp... 40 3.5
54gb|AC093294.3| Homo sapiens chromosome 5 clone RP11-524C16, comp... 40 3.5
55ref|XM_685713.1| PREDICTED: Danio rerio similar to Nesprin 2 (Nu... 40 3.5
56ref|XM_685504.1| PREDICTED: Danio rerio similar to Nesprin 2 (Nu... 40 3.5
57dbj|AK032151.1| Mus musculus adult male olfactory brain cDNA, RI... 40 3.5
58dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 40 3.5
59gb|AC027334.5| Homo sapiens chromosome 5 clone CTD-2195M18, comp... 40 3.5
60gb|AC008069.3| Homo sapiens BAC clone RP11-335I19 from 2, comple... 40 3.5
61gb|AC137579.3| Homo sapiens chromosome 8, clone RP11-346L1, comp... 40 3.5
62gb|AC124067.10| Homo sapiens chromosome 8, clone RP11-150O12, co... 40 3.5
63emb|AL954767.11| Zebrafish DNA sequence from clone CH211-225B14 ... 40 3.5
64dbj|AB025608.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 3.5
65gb|AC154466.2| Mus musculus BAC clone RP24-148D22 from 14, compl... 40 3.5
66tpe|BN000780.1| TPA: TPA_exp: Mus musculus sushi-XC3 ORF for gag... 40 3.5
67dbj|AP006462.2| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.5
68dbj|AP006302.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 40 3.5
69gb|AC159248.4| Mus musculus BAC clone RP24-254P11 from chromosom... 40 3.5
70gb|AC102485.25| Mus musculus chromosome 5, clone RP24-469G19, co... 40 3.5
71emb|BX004776.4| Zebrafish DNA sequence from clone CH211-137A8 in... 40 3.5
72gb|AF044501.1|ECRHSEH3 Escherichia coli strain ec45 RhsE accesso... 40 3.5
73gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 3.5
74dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 3.5
75emb|AL807784.11| Mouse DNA sequence from clone RP23-448C18 on ch... 40 3.5
76gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 3.5
77dbj|AP000067.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 3.5 
>emb|AL354920.21| Human DNA sequence from clone RP11-522I20 on chromosome 9 Contains a
             novel gene, the UBQLN1 gene for ubiquilin 1 (DA41, DSK2,
             XDRP1, PLIC-1), the 3' UTR of the gene for protein kinase
             anchoring protein GKAP42 (FKSG21) and two CpG islands,
             complete sequence
          Length = 168804

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 114   cctcctcctccttgtcttactcctc 138
             |||||||||||||||||||||||||
Sbjct: 13671 cctcctcctccttgtcttactcctc 13695
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>ref|NM_001003658.2| Bos taurus EIF5A protein (EIF5A), mRNA
          Length = 1273

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 175 tccgagcccgctgccgctgccgct 198
           ||||||||||||||||||||||||
Sbjct: 62  tccgagcccgctgccgctgccgct 39
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>gb|BC108135.1| Bos taurus EIF5A protein, mRNA (cDNA clone MGC:128860
           IMAGE:8119739), complete cds
          Length = 1273

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 175 tccgagcccgctgccgctgccgct 198
           ||||||||||||||||||||||||
Sbjct: 62  tccgagcccgctgccgctgccgct 39
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>ref|XM_466929.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3372

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 215 ccgcgctgctctccttcaggtc 236
           ||||||||||||||||||||||
Sbjct: 185 ccgcgctgctctccttcaggtc 206
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>gb|AC137693.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1111_B01,
             complete sequence
          Length = 136068

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 216   cgcgctgctctccttcaggtcg 237
             ||||||||||||||||||||||
Sbjct: 79593 cgcgctgctctccttcaggtcg 79614
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>emb|Z48149.1|SCCHRXV44 S.cerevisiae chromosome XV DNA (44 kb fragment)
          Length = 44019

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 93    aatggcaatggcagcactgacc 114
             ||||||||||||||||||||||
Sbjct: 10716 aatggcaatggcagcactgacc 10737
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>gb|AC109644.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0459F09, complete sequence
          Length = 143533

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 216   cgcgctgctctccttcaggtcg 237
             ||||||||||||||||||||||
Sbjct: 24561 cgcgctgctctccttcaggtcg 24582
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>gb|AC144559.1| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0459F09, complete sequence
          Length = 143533

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 216   cgcgctgctctccttcaggtcg 237
             ||||||||||||||||||||||
Sbjct: 24561 cgcgctgctctccttcaggtcg 24582
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 216      cgcgctgctctccttcaggtcg 237
                ||||||||||||||||||||||
Sbjct: 20411646 cgcgctgctctccttcaggtcg 20411625
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 215      ccgcgctgctctccttcaggtc 236
                ||||||||||||||||||||||
Sbjct: 25506760 ccgcgctgctctccttcaggtc 25506781
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>dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1626_B09
          Length = 58749

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 215   ccgcgctgctctccttcaggtc 236
             ||||||||||||||||||||||
Sbjct: 51310 ccgcgctgctctccttcaggtc 51331
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>dbj|AK111694.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004O18, full
           insert sequence
          Length = 3373

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 215 ccgcgctgctctccttcaggtc 236
           ||||||||||||||||||||||
Sbjct: 185 ccgcgctgctctccttcaggtc 206
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>dbj|AK111589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092C01, full
           insert sequence
          Length = 3580

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 216 cgcgctgctctccttcaggtcg 237
           ||||||||||||||||||||||
Sbjct: 166 cgcgctgctctccttcaggtcg 187
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>emb|Z74854.1|SCYOL112W S.cerevisiae chromosome XV reading frame ORF YOL112w
          Length = 1964

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 93   aatggcaatggcagcactgacc 114
            ||||||||||||||||||||||
Sbjct: 1347 aatggcaatggcagcactgacc 1368
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 216      cgcgctgctctccttcaggtcg 237
                ||||||||||||||||||||||
Sbjct: 20721880 cgcgctgctctccttcaggtcg 20721859
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>emb|BX294125.5| Mouse DNA sequence from clone RP24-129F5 on chromosome 4, complete
            sequence
          Length = 77127

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 113  ccctcctcctccttgtcttactcctc 138
            ||||||||||||||||||| ||||||
Sbjct: 9918 ccctcctcctccttgtcttcctcctc 9943
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>gb|AC108321.5| Rattus norvegicus BAC CH230-261E4 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 196424

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 114    cctcctcctccttgtcttactcctc 138
              |||||||||||||||||| ||||||
Sbjct: 106592 cctcctcctccttgtcttcctcctc 106568
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>ref|NM_002208.3| Homo sapiens integrin, alpha E (antigen CD103, human mucosal
           lymphocyte antigen 1; alpha polypeptide) (ITGAE), mRNA
          Length = 3927

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 114 cctcctcctccttgtcttactcctc 138
           |||||||||||||||||| ||||||
Sbjct: 699 cctcctcctccttgtcttcctcctc 675
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>gb|AC023174.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-25N12, complete
              sequence
          Length = 223266

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 114    cctcctcctccttgtcttactcctc 138
              |||||||||||||||||| ||||||
Sbjct: 195607 cctcctcctccttgtcttcctcctc 195631
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 88      gcagcaatggcaatggcagca 108
               |||||||||||||||||||||
Sbjct: 7970574 gcagcaatggcaatggcagca 7970594
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>gb|AC084389.1| Mus musculus BAC clone RP23-247A1 from 1, complete sequence
          Length = 206497

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 114   cctcctcctccttgtcttactcctc 138
             |||||||||||||||||| ||||||
Sbjct: 62028 cctcctcctccttgtcttcctcctc 62052



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 114   cctcctcctccttgtcttactcctc 138
             |||||||||||||||||| ||||||
Sbjct: 61977 cctcctcctccttgtcttcctcctc 62001



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 114   cctcctcctccttgtcttactcctc 138
             |||||||||||||||||| ||||||
Sbjct: 61881 cctcctcctccttgtcttcctcctc 61905



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 114   cctcctcctccttgtcttactcctc 138
             |||||||||||||||||| ||||||
Sbjct: 61830 cctcctcctccttgtcttcctcctc 61854



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 114   cctcctcctccttgtcttactcctc 138
             |||||||||||||||||| ||||||
Sbjct: 61752 cctcctcctccttgtcttcctcctc 61776
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>emb|AL133402.10| Human DNA sequence from clone RP5-1077H22 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 93368

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 114   cctcctcctccttgtcttactcctc 138
             |||||||||||||||||| ||||||
Sbjct: 46504 cctcctcctccttgtcttcctcctc 46480
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>emb|AL096855.48|HS1115A15 Human DNA sequence from clone RP5-1115A15 on chromosome 1p36.11-36.31
              Contains part of the RERE gene for arginine-glutamic acid
              dipeptide (RE) repeats (KIAA0458, FLJ38775), a novel gene
              and a CpG island, complete sequence
          Length = 178403

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 114    cctcctcctccttgtcttactcctc 138
              |||||||||||||||||| ||||||
Sbjct: 105597 cctcctcctccttgtcttcctcctc 105573
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>gb|AY907537.1| Uncultured bacterial symbiont of Discodermia dissoluta polyketide
             synthesis gene cluster, partial sequence
          Length = 124311

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 182   ccgctgccgctgccgctagcg 202
             |||||||||||||||||||||
Sbjct: 33860 ccgctgccgctgccgctagcg 33840
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>emb|AL929371.6| Mouse DNA sequence from clone RP23-176O5 on chromosome 11 Contains a
             ribosomal protein S2 (Rps2) pseudogene, a novel gene, an
             apurinic/apyrimidinic endonuclease 2 (Apex2) pseudogene,
             the Rtn4 gene for reticulon 4, the 3' end of the gene for
             a novel protein (C230094A16Rik) (MGC38936) and a CpG
             island, complete sequence
          Length = 212042

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 114   cctcctcctccttgtcttactcctc 138
             ||||||||||||| |||||||||||
Sbjct: 44396 cctcctcctccttttcttactcctc 44372
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>gb|AC116914.5| Homo sapiens chromosome 17, clone CTD-3195I5, complete sequence
          Length = 138536

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 114   cctcctcctccttgtcttactcctc 138
             |||||||||||||||||| ||||||
Sbjct: 55475 cctcctcctccttgtcttcctcctc 55499
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>gb|AC012588.14| Homo sapiens chromosome 18, clone RP11-17A19, complete sequence
          Length = 148738

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 114  cctcctcctccttgtcttactcctc 138
            |||||||||||||||||| ||||||
Sbjct: 8231 cctcctcctccttgtcttcctcctc 8207



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 114  cctcctcctccttgtcttactcctc 138
            |||||||||||||||||| ||||||
Sbjct: 7960 cctcctcctccttgtcttcctcctc 7936
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>gb|AC090206.7| Homo sapiens chromosome 18, clone RP11-349H17, complete sequence
          Length = 91609

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 114   cctcctcctccttgtcttactcctc 138
             |||||||||||||||||| ||||||
Sbjct: 29826 cctcctcctccttgtcttcctcctc 29802
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>gb|AC118269.6| Homo sapiens chromosome 17, clone CTD-2383D6, complete sequence
          Length = 129758

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 114   cctcctcctccttgtcttactcctc 138
             |||||||||||||||||| ||||||
Sbjct: 39722 cctcctcctccttgtcttcctcctc 39746
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>gb|AC009643.8| Homo sapiens chromosome 11, clone RP11-111A24, complete sequence
          Length = 183169

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 114   cctcctcctccttgtcttactcctc 138
             ||||||||||||| |||||||||||
Sbjct: 59961 cctcctcctccttctcttactcctc 59937
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>gb|AF325500.1|AF325500 Antheraea yamamai transposon mariner-like element transposase gene,
            partial cds; and fibroin gene, complete cds
          Length = 9921

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 178  gagcccgctgccgctgccgct 198
            |||||||||||||||||||||
Sbjct: 6851 gagcccgctgccgctgccgct 6831



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 178  gagcccgctgccgctgccgct 198
            |||||||||||||||||||||
Sbjct: 6401 gagcccgctgccgctgccgct 6381



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 178  gagcccgctgccgctgccgct 198
            |||||||||||||||||||||
Sbjct: 5951 gagcccgctgccgctgccgct 5931
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 247     ggcgacccgtcgcgggcgctg 267
               |||||||||||||||||||||
Sbjct: 1728360 ggcgacccgtcgcgggcgctg 1728380
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 88      gcagcaatggcaatggcagca 108
               |||||||||||||||||||||
Sbjct: 7968409 gcagcaatggcaatggcagca 7968429
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>gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0081I10, complete sequence
          Length = 143298

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 88    gcagcaatggcaatggcagca 108
             |||||||||||||||||||||
Sbjct: 37937 gcagcaatggcaatggcagca 37957
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>ref|XM_238325.3| PREDICTED: Rattus norvegicus similar to mKIAA0023 protein
           (predicted) (LOC296634), mRNA
          Length = 6498

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 184 gctgccgctgccgctagcgtc 204
           |||||||||||||||||||||
Sbjct: 277 gctgccgctgccgctagcgtc 257
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>gb|AF168787.1|AF168787 Homo sapiens vanilloid receptor gene, partial sequence; CARKL and CTNS
              genes, complete cds; TIP1 gene, partial cds; P2X5b and
              P2X5a genes, complete cds; and HUMINAE gene, partial cds
          Length = 200237

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 114    cctcctcctccttgtcttactcctc 138
              |||||||||||||||||| ||||||
Sbjct: 194937 cctcctcctccttgtcttcctcctc 194961
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>gb|L25851.2|HUMINAE Homo sapiens integrin alpha E precursor, mRNA, complete cds
          Length = 3927

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 114 cctcctcctccttgtcttactcctc 138
           |||||||||||||||||| ||||||
Sbjct: 699 cctcctcctccttgtcttcctcctc 675
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>emb|AL844553.4| Mouse DNA sequence from clone RP23-255J15 on chromosome 2, complete
             sequence
          Length = 82080

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 114   cctcctcctccttgtcttactcctc 138
             ||||||||||||| |||||||||||
Sbjct: 11084 cctcctcctccttctcttactcctc 11108
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>emb|AL627235.12| Mouse DNA sequence from clone RP23-324C12 on chromosome 11, complete
             sequence
          Length = 118185

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 114   cctcctcctccttgtcttactcctc 138
             |||||||||||||||||| ||||||
Sbjct: 57283 cctcctcctccttgtcttcctcctc 57259
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>gb|AC164079.11| Mus musculus chromosome 1, clone RP23-15E12, complete sequence
          Length = 215135

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 115    ctcctcctccttgtcttactcctc 138
              ||||||||||||||||| ||||||
Sbjct: 181269 ctcctcctccttgtcttcctcctc 181246
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>gb|AC166986.4| Mus musculus chromosome 1, clone RP24-184H22, complete sequence
          Length = 164014

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 115   ctcctcctccttgtcttactcctc 138
             ||||||||||||||||| ||||||
Sbjct: 18297 ctcctcctccttgtcttcctcctc 18274
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>gb|AC140465.2| Mus musculus BAC clone RP24-389J3 from chromosome 16, complete sequence
          Length = 189550

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 114    cctcctcctccttgtcttactcct 137
              |||||||||||||||||| |||||
Sbjct: 145186 cctcctcctccttgtcttcctcct 145163
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>emb|CR626888.9| Zebrafish DNA sequence from clone CH211-250B7 in linkage group 16,
             complete sequence
          Length = 156550

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   gcactgaccctcctcctcct 125
             ||||||||||||||||||||
Sbjct: 73556 gcactgaccctcctcctcct 73537
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>ref|XM_745581.1| Aspergillus fumigatus Af293 stromal membrane-associated protein
            (Afu6g07830) partial mRNA
          Length = 1815

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  ccgagcccgctgccgctgcc 195
            ||||||||||||||||||||
Sbjct: 1526 ccgagcccgctgccgctgcc 1545
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>gb|AC007335.7| Homo sapiens chromosome 16 clone RP11-165M2, complete sequence
          Length = 134482

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 114   cctcctcctccttgtcttactcct 137
             |||||||||||||||||| |||||
Sbjct: 55940 cctcctcctccttgtcttcctcct 55963
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>gb|AC113096.12| Mus musculus chromosome 14, clone RP23-312M23, complete sequence
          Length = 224556

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 115    ctcctcctccttgtcttactcctc 138
              ||||||||||||||||| ||||||
Sbjct: 191497 ctcctcctccttgtcttcctcctc 191520
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>ref|XM_546089.2| PREDICTED: Canis familiaris similar to egl nine homolog 1
           (LOC488971), mRNA
          Length = 1847

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 175 tccgagcccgctgccgctgccgct 198
           |||| |||||||||||||||||||
Sbjct: 279 tccgggcccgctgccgctgccgct 302
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>gb|AC051649.21| Homo sapiens chromosome 11, clone RP11-534I22, complete sequence
          Length = 188519

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   cactgaccctcctcctcctt 126
             ||||||||||||||||||||
Sbjct: 76679 cactgaccctcctcctcctt 76660
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>gb|AC020766.10| Homo sapiens chromosome 16 clone RP11-70N16, complete sequence
          Length = 173595

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 114    cctcctcctccttgtcttactcct 137
              |||||||||||||||||| |||||
Sbjct: 136538 cctcctcctccttgtcttcctcct 136515
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>dbj|AK220436.1| Mus musculus mRNA for mKIAA2001 protein
          Length = 4325

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 115  ctcctcctccttgtcttactcctc 138
            ||||||||||||||||| ||||||
Sbjct: 1744 ctcctcctccttgtcttcctcctc 1721
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>gb|AC113370.2| Homo sapiens chromosome 5 clone RP11-124O5, complete sequence
          Length = 189590

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 119  tcctccttgtcttactcctc 138
            ||||||||||||||||||||
Sbjct: 2450 tcctccttgtcttactcctc 2469
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>ref|NM_183318.1| Mus musculus retrotransposon gag domain containing 4 (Rgag4), mRNA
          Length = 4647

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 115  ctcctcctccttgtcttactcctc 138
            ||||||||||||||||| ||||||
Sbjct: 1637 ctcctcctccttgtcttcctcctc 1614
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>gb|AC087274.8| Homo sapiens chromosome 8, clone RP11-681J6, complete sequence
          Length = 191786

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     cagcaatggcaatggcagca 108
              ||||||||||||||||||||
Sbjct: 113419 cagcaatggcaatggcagca 113438
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>gb|AC093294.3| Homo sapiens chromosome 5 clone RP11-524C16, complete sequence
          Length = 171739

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    tcctccttgtcttactcctc 138
              ||||||||||||||||||||
Sbjct: 120835 tcctccttgtcttactcctc 120854
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>ref|XM_685713.1| PREDICTED: Danio rerio similar to Nesprin 2 (Nuclear envelope
            spectrin repeat protein 2) (Syne-2) (Synaptic nuclear
            envelope protein 2) (Nucleus and actin connecting element
            protein) (NUANCE protein) (LOC562324), mRNA
          Length = 2928

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  accctcctcctccttgtctt 131
            ||||||||||||||||||||
Sbjct: 1764 accctcctcctccttgtctt 1745
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>ref|XM_685504.1| PREDICTED: Danio rerio similar to Nesprin 2 (Nuclear envelope
            spectrin repeat protein 2) (Syne-2) (Synaptic nuclear
            envelope protein 2) (Nucleus and actin connecting element
            protein) (NUANCE protein) (LOC562108), mRNA
          Length = 2920

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  accctcctcctccttgtctt 131
            ||||||||||||||||||||
Sbjct: 1762 accctcctcctccttgtctt 1743
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>dbj|AK032151.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430402L03 product:hypothetical
            Crystallin containing protein, full insert sequence
          Length = 4647

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 115  ctcctcctccttgtcttactcctc 138
            ||||||||||||||||| ||||||
Sbjct: 1637 ctcctcctccttgtcttcctcctc 1614
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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    tgctctccttcaggtcgctc 240
              ||||||||||||||||||||
Sbjct: 795155 tgctctccttcaggtcgctc 795174
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>gb|AC027334.5| Homo sapiens chromosome 5 clone CTD-2195M18, complete sequence
          Length = 101996

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 114   cctcctcctccttgtcttactcct 137
             |||||||||||||||||| |||||
Sbjct: 33951 cctcctcctccttgtctttctcct 33974
to top
>gb|AC008069.3| Homo sapiens BAC clone RP11-335I19 from 2, complete sequence
          Length = 188002

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gcgctgctctccttcaggtc 236
             ||||||||||||||||||||
Sbjct: 99414 gcgctgctctccttcaggtc 99395
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>gb|AC137579.3| Homo sapiens chromosome 8, clone RP11-346L1, complete sequence
          Length = 176794

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 114   cctcctcctccttgtcttactcct 137
             ||||||||||||| ||||||||||
Sbjct: 25836 cctcctcctccttctcttactcct 25813
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>gb|AC124067.10| Homo sapiens chromosome 8, clone RP11-150O12, complete sequence
          Length = 179201

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 114   cctcctcctccttgtcttactcct 137
             ||||||||||||| ||||||||||
Sbjct: 48096 cctcctcctccttctcttactcct 48119
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>emb|AL954767.11| Zebrafish DNA sequence from clone CH211-225B14 in linkage group 21,
             complete sequence
          Length = 182923

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gcgctgctctccttcaggtc 236
             ||||||||||||||||||||
Sbjct: 60349 gcgctgctctccttcaggtc 60330
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>dbj|AB025608.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15
          Length = 83689

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    tccagtccacactccacaat 56
             ||||||||||||||||||||
Sbjct: 83304 tccagtccacactccacaat 83323
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>gb|AC154466.2| Mus musculus BAC clone RP24-148D22 from 14, complete sequence
          Length = 149772

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 115   ctcctcctccttgtcttactcctc 138
             ||||||||||||||||| ||||||
Sbjct: 56455 ctcctcctccttgtcttcctcctc 56432
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>tpe|BN000780.1| TPA: TPA_exp: Mus musculus sushi-XC3 ORF for gag-like protein
          Length = 1800

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 115  ctcctcctccttgtcttactcctc 138
            ||||||||||||||||| ||||||
Sbjct: 1302 ctcctcctccttgtcttcctcctc 1279
to top
>dbj|AP006462.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-813O18, complete
             sequence
          Length = 98815

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   cactgaccctcctcctcctt 126
             ||||||||||||||||||||
Sbjct: 94228 cactgaccctcctcctcctt 94247
to top
>dbj|AP006302.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-150O12, complete
              sequence
          Length = 179216

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 114    cctcctcctccttgtcttactcct 137
              ||||||||||||| ||||||||||
Sbjct: 131121 cctcctcctccttctcttactcct 131098
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>gb|AC159248.4| Mus musculus BAC clone RP24-254P11 from chromosome 16, complete sequence
          Length = 172440

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 114    cctcctcctccttgtcttactcct 137
              |||||||||||||||||| |||||
Sbjct: 111284 cctcctcctccttgtcttcctcct 111307
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>gb|AC102485.25| Mus musculus chromosome 5, clone RP24-469G19, complete sequence
          Length = 168799

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 115   ctcctcctccttgtcttactcctc 138
             ||||||||||||||||| ||||||
Sbjct: 87044 ctcctcctccttgtcttcctcctc 87067
to top
>emb|BX004776.4| Zebrafish DNA sequence from clone CH211-137A8 in linkage group 15,
              complete sequence
          Length = 195462

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    accctcctcctccttgtctt 131
              ||||||||||||||||||||
Sbjct: 145837 accctcctcctccttgtctt 145856
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>gb|AF044501.1|ECRHSEH3 Escherichia coli strain ec45 RhsE accessory genetic element core
           protein gene, partial cds, and dsORF-e4, complete cds;
           and RhsH accessory genetic element unknown (450), core
           protein, and dsORF-h1 genes, complete cds
          Length = 10358

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 74  taccgtctgccggggcagca 93
           ||||||||||||||||||||
Sbjct: 442 taccgtctgccggggcagca 461
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 74      taccgtctgccggggcagca 93
               ||||||||||||||||||||
Sbjct: 2038969 taccgtctgccggggcagca 2038950
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 74      taccgtctgccggggcagca 93
               ||||||||||||||||||||
Sbjct: 2049504 taccgtctgccggggcagca 2049523
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>emb|AL807784.11| Mouse DNA sequence from clone RP23-448C18 on chromosome X, complete
             sequence
          Length = 127196

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 115   ctcctcctccttgtcttactcctc 138
             ||||||||||||||||| ||||||
Sbjct: 14437 ctcctcctccttgtcttcctcctc 14460
to top
>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 74      taccgtctgccggggcagca 93
               ||||||||||||||||||||
Sbjct: 1777268 taccgtctgccggggcagca 1777249
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>dbj|AP000067.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 3/19
          Length = 100000

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 114   cctcctcctccttgtcttactcct 137
             ||||||||||||| ||||||||||
Sbjct: 88914 cctcctcctccttctcttactcct 88937


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,312,224
Number of Sequences: 3902068
Number of extensions: 2312224
Number of successful extensions: 55282
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54837
Number of HSP's gapped (non-prelim): 445
length of query: 269
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 247
effective length of database: 17,147,199,772
effective search space: 4235358343684
effective search space used: 4235358343684
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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