ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl22h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLK3_MOUSE (Q60806) Serine/threonine-protein kinase PLK3 (EC 2.7... 31 1.7
2ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (1... 29 6.3
3ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (1... 29 6.3
4ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (1... 29 6.3
5GCSP_PROMM (Q7V411) Glycine dehydrogenase [decarboxylating] (EC ... 29 6.3

>PLK3_MOUSE (Q60806) Serine/threonine-protein kinase PLK3 (EC 2.7.11.21)|
           (Polo-like kinase 3) (PLK-3) (Cytokine-inducible
           serine/threonine-protein kinase) (FGF-inducible kinase)
          Length = 631

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 1   QTSISFLDPEPAFFSLSSSDPPAGPCHPRGRSPRRRP 111
           + +  FL P P   +   S PPAGP  P   SPR  P
Sbjct: 2   EPAAGFLSPRPFPRAAVPSAPPAGPGPPANASPRSEP 38



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>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 43  SLSSSDPPAGPCHPRGRSPRRRP 111
           +L   +PPAG   P GRSP R P
Sbjct: 313 TLERPEPPAGMASPPGRSPHRLP 335



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>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 43  SLSSSDPPAGPCHPRGRSPRRRP 111
           +L   +PPAG   P GRSP R P
Sbjct: 313 TLERPEPPAGMASPPGRSPHRLP 335



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>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 43  SLSSSDPPAGPCHPRGRSPRRRP 111
           +L   +PPAG   P GRSP R P
Sbjct: 313 TLERPEPPAGMASPPGRSPHRLP 335



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>GCSP_PROMM (Q7V411) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 962

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 321 VPPGDQGEASAPGVELPAIVREIQRIDTIRLYAEATLQLEALVG 452
           V P D  E +AP   LP    E+Q ++ +RL A A     +L+G
Sbjct: 30  VVPPDILETTAPSSSLPEGCGEVQAMEELRLIAAANRVRRSLIG 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,530,551
Number of Sequences: 219361
Number of extensions: 403554
Number of successful extensions: 2143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2142
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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