>GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -2

Query: 365 NSPPWGRSLPDTGRSILDGLYQTPRAFGGAEASQPNVDGNEEK*SPTLPPLLRGAARDLP 186
           N+ P  + LPD+G  ++D L + P  +       P+  G+  + +PT      GA    P
Sbjct: 138 NTKPRPQVLPDSGGPLIDLLTEDPPPYRDPGPPSPDGKGDSGEVAPT-----EGAPDSSP 192

Query: 185 SLTRSRSGR 159
            ++R R  R
Sbjct: 193 MVSRLRGRR 201

>PX11C_HUMAN (Q96HA9) Peroxisomal membrane protein 11C (Peroxin-11C)|
           (Peroxisomal biogenesis factor 11C) (PEX11gamma)
           (Pex11pgamma)
          Length = 241

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = -2

Query: 359 PPWGRSLPDTGRSILDGLYQTPRAFGGAEASQP 261
           PPW   L  T  SIL  +YQ  RA G AEA+ P
Sbjct: 210 PPWLVGLMGTISSILS-MYQAARAGGQAEATTP 241

>IL3RB_HUMAN (P32927) Cytokine receptor common beta chain precursor|
           (GM-CSF/IL-3/IL-5 receptor common beta-chain) (CD131
           antigen) (CDw131)
          Length = 897

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -2

Query: 356 PWGRSLPDTGRSILDGLYQTPRAFGGAEASQPNVDGNEEK*SPTLPPLLRGAARDLPS 183
           PWG   P+     L+G++  P  FG +E S   ++  +    P   P    AA DLP+
Sbjct: 513 PWGSRFPE-----LEGVF--PVGFGDSEVSPLTIEDPKHVCDPPSGPDTTPAASDLPT 563

>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 538

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -2

Query: 365 NSPPWGRSLPDTGRSILDGLYQTPRAFGGAEASQPNVDGNEEK*SPTLPPLLRGAARDLP 186
           N+ P  + LPD+G  ++D L + P  +     S  + +G   + +PT      GA    P
Sbjct: 139 NTKPRPQVLPDSGGPLIDLLTEDPPPYRDPGPSSSDGNGGSGEVAPT-----EGAPDSSP 193

Query: 185 SLTRSRSGR 159
            ++R R  R
Sbjct: 194 MVSRLRGRR 202

>SYTL2_HUMAN (Q9HCH5) Synaptotagmin-like protein 2 (Exophilin-4)|
          Length = 895

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 272 ASQPNVDGNEEK*SPTLPPLLRGAARDLPS 183
           +S+    G+EE+ SP L  L R AAR +PS
Sbjct: 465 SSRDRQQGSEEEPSPVLKTLERSAARKMPS 494

>GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -2

Query: 365 NSPPWGRSLPDTGRSILDGLYQTPRAFGGAEASQPNVDGNEEK*SPTLPPLLRGAARDLP 186
           N+ P  + LPD+G  ++D L + P  +       P+ +G+  + +PT      GA    P
Sbjct: 138 NTKPRPQVLPDSGGPLIDLLTEDPPPYRDPGPPSPDGNGDSGEVAPT-----EGAPDPSP 192

Query: 185 SLTRSR 168
            ++R R
Sbjct: 193 MVSRLR 198

>SECY_SYNP7 (P0A4H0) Preprotein translocase secY subunit|
          Length = 439

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 228 WALLLFIPVDVWLTGFRPTESPRCLIQT 311
           WALL  I + VW+T +  T  P   IQT
Sbjct: 135 WALLQSIVIAVWVTRYAVTPGPLFTIQT 162

>SECY_SYNP6 (P0A4H1) Preprotein translocase secY subunit|
          Length = 439

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 228 WALLLFIPVDVWLTGFRPTESPRCLIQT 311
           WALL  I + VW+T +  T  P   IQT
Sbjct: 135 WALLQSIVIAVWVTRYAVTPGPLFTIQT 162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,413,452
Number of Sequences: 219361
Number of extensions: 601596
Number of successful extensions: 1546
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)