ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl22g07 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 79.7 bits (195), Expect = 1e-15 Identities = 37/90 (41%), Positives = 57/90 (63%) Frame = +2 Query: 140 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVL 319 PC +++ ++K DLE D K+E +KR + LLLNGE P L +T++R+VL Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVL 65 Query: 320 PSEDHTIQKLLLLYLEIIDKRDAADRVLPE 409 P ++HTI+KLLL++ EI+ K A ++L E Sbjct: 66 PVQNHTIKKLLLIFWEIVPKTSADGKLLQE 95
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 79.7 bits (195), Expect = 1e-15 Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 1/95 (1%) Frame = +2 Query: 128 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 304 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 305 VRYVLPSEDHTIQKLLLLYLEIIDKRDAADRVLPE 409 +R+VLP +DHTI+KLLL++ EI+ K R+L E Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHE 97
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 79.7 bits (195), Expect = 1e-15 Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 1/95 (1%) Frame = +2 Query: 128 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 304 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 305 VRYVLPSEDHTIQKLLLLYLEIIDKRDAADRVLPE 409 +R+VLP +DHTI+KLLL++ EI+ K R+L E Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHE 97
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 79.7 bits (195), Expect = 1e-15 Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 1/95 (1%) Frame = +2 Query: 128 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 304 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 305 VRYVLPSEDHTIQKLLLLYLEIIDKRDAADRVLPE 409 +R+VLP +DHTI+KLLL++ EI+ K R+L E Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHE 97
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 57.4 bits (137), Expect = 8e-09 Identities = 27/79 (34%), Positives = 47/79 (59%) Frame = +2 Query: 143 CTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLP 322 C LV D A + +K LE + K+ AMK + +++NG++LP++ + V+R+V+P Sbjct: 3 CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMP 62 Query: 323 SEDHTIQKLLLLYLEIIDK 379 S + ++KLL Y E+ K Sbjct: 63 SRNKELKKLLYYYWEVCPK 81
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/61 (37%), Positives = 40/61 (65%) Frame = +2 Query: 197 KADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIID 376 KA +GSD K++ MK ++ +L G +P L + ++R+V+PS++ ++KLL Y EI+ Sbjct: 30 KALEKGSD-EQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVP 88 Query: 377 K 379 K Sbjct: 89 K 89
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 31.2 bits (69), Expect = 0.61 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = +2 Query: 101 PARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGET 280 P +H +SG + P + FD S A + + L ++V+ +EA ++ ++ ++G Sbjct: 1082 PGNLH-KSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSG 1140 Query: 281 LPTLFITVVRYVLPSED 331 TL + ++R PSED Sbjct: 1141 KSTL-VELLRKTYPSED 1156
>S27A3_HUMAN (Q5K4L6) Long-chain fatty acid transport protein 3 (EC 6.2.1.-)| (Fatty acid transport protein 3) (FATP-3) (Very long-chain acyl-CoA synthetase homolog 3) (VLCS-3) (Solute carrier family 27 member 3) Length = 683 Score = 30.4 bits (67), Expect = 1.0 Identities = 17/37 (45%), Positives = 18/37 (48%) Frame = -2 Query: 130 GAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGGG 20 G GSA R A G + GS AE GA RGGG Sbjct: 123 GEGSAGEGERAAPGAGDAAAGSGAEFAGGDGAARGGG 159
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -2 Query: 196 DLIRHGGGALVEVD*QRARLVHGAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 23 DL+R GGA+ + A ++ GA +H RRA V+ + A + ++ GAG+ G Sbjct: 868 DLVRRTGGAVPRGPLE-ALVLAGAFDRLHSNRRAALWQVAHLLEAERIRQERGAGQAG 924
>ELOA2_HUMAN (Q8IYF1) RNA polymerase II transcription factor SIII subunit A2| (Elongin A2) (EloA2) (Transcription elongation factor B polypeptide 3B) Length = 753 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = +2 Query: 8 PVNHSPPSSGSQISIHLRRRSNHRYPTRRRPPARVHGRSGAMDKPCTLLVHFDKG 172 P N + P S S H RR + P ++RP R H R ++ C + D G Sbjct: 113 PENATAPRSPSHSPEH-RRTARRTPPGQQRPHPRSHSREPRAERKCPRIAPADSG 166
>RSNL2_MOUSE (Q8CI96) Restin-like protein 2| Length = 704 Score = 28.9 bits (63), Expect = 3.0 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Frame = +2 Query: 164 DKG---SAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 334 DKG + + + + LE +D AA + +K+ +LL+ LP T + VLP+ DH Sbjct: 218 DKGQIPAEVVPDPVDMPLEMADAAAIAKEIKQ---MLLDAVPLPC---TSAKAVLPNSDH 271 Query: 335 TIQKLLLLYL 364 T + +L L Sbjct: 272 TTSRAMLTSL 281
>ANPRC_RAT (P41740) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) Length = 535 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +2 Query: 203 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 334 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) (EF-2) Length = 536 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +2 Query: 203 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 334 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>NU2C_PROMM (Q7V626) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2) Length = 523 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -3 Query: 231 LAATSLPSRSALISFAMAAEPLSKWTSSVHGLSMAPDLPCTRAGGR 94 LAA SL A ++F +AA P +WT V+ S P + G + Sbjct: 222 LAALSLVFVLATVAFKIAAVPFHQWTPDVYEGSPTPVVAFLSVGSK 267
>DRD2_RAT (P61169) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 28.1 bits (61), Expect = 5.2 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 306 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 142 T +MKS G RR M A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRMDAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 141 GLSMAPDLP 115 GL PD P Sbjct: 314 GLHSNPDSP 322
>DRD2_MOUSE (P61168) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 28.1 bits (61), Expect = 5.2 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 306 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 142 T +MKS G RR M A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRMDAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 141 GLSMAPDLP 115 GL PD P Sbjct: 314 GLHSNPDSP 322
>CLA4_YEAST (P48562) Serine/threonine-protein kinase CLA4 (EC 2.7.11.1)| Length = 842 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +2 Query: 8 PVNHSPPSSGSQISIHLRRRSNHRYPTRRRPPARVHGR 121 P+N P+S S I HL+ N +YP R + +G+ Sbjct: 319 PINTKLPTSQSNIPRHLQNVPNQQYPKMRNGHSPTNGQ 356
>HCY2E_RAPTH (P83040) Hemocyanin type 2 unit e (RtH2-e)| Length = 413 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 7/75 (9%) Frame = -3 Query: 324 EGRT*RTTVMKSVGRVSPLRRSMTARFMASTLAATSLPSRSALISFAMAAEPL------- 166 +G T R V KSV +SP R + S +S +L SF A PL Sbjct: 3 QGHTHRNLVRKSVRNLSPAERRSLVHALKSLQEDSSADGFQSLASF-HAQPPLCPYPEAN 61 Query: 165 SKWTSSVHGLSMAPD 121 ++ VHG++ P+ Sbjct: 62 KRFACCVHGMATFPE 76
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +2 Query: 62 RRSNHRYPTRRRPPARVHGRSGA 130 RR ++R P RRRP R H RS A Sbjct: 409 RRDSYRDPYRRRPGDRSHSRSPA 431
>IRS1_XENTR (Q6P4Y6) Insulin receptor substrate 1 (IRS-1)| Length = 654 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 7/45 (15%) Frame = +2 Query: 23 PPSSGSQISIHLR-------RRSNHRYPTRRRPPARVHGRSGAMD 136 PPS G +SIH R R +HR P R R HG + D Sbjct: 557 PPSPGEYVSIHFRAPPEEDLREGSHRCPKR----VRFHGGAALGD 597
>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) (NV domain-containing protein 1) Length = 3160 Score = 27.3 bits (59), Expect = 8.8 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +2 Query: 260 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAA 391 L L+ T L + + Y PSED ++L L LEI+D AA Sbjct: 371 LPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEIVDPEGAA 414
>DRD2_PANTR (P60026) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 443 Score = 27.3 bits (59), Expect = 8.8 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 306 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 142 T +MKS G RR + A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 141 GLSMAPDLP 115 GL PD P Sbjct: 314 GLHSTPDSP 322
>DRD2_HUMAN (P14416) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 443 Score = 27.3 bits (59), Expect = 8.8 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 306 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 142 T +MKS G RR + A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 141 GLSMAPDLP 115 GL PD P Sbjct: 314 GLHSTPDSP 322
>DRD2_CERAE (P52702) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 443 Score = 27.3 bits (59), Expect = 8.8 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 306 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 142 T +MKS G RR + A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 141 GLSMAPDLP 115 GL PD P Sbjct: 314 GLHSTPDSP 322
>YPNA_THIRO (Q83WU4) UPF0085 protein in pntA-hypC2 intergenic region (Orf2)| Length = 271 Score = 27.3 bits (59), Expect = 8.8 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Frame = +2 Query: 98 PPARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLL--- 268 PP+R GRS A+ KP + + AMAN D + + RA ++L+ Sbjct: 104 PPSRKSGRSHAITKPSYYTKRIEAINFAMAN---------DDGIRPDNFHRADVVLIGVS 154 Query: 269 -NGETLPTLFITVVRYVLPSEDHTI 340 +G+T PT + Y L S ++ + Sbjct: 155 RSGKT-PTCLYLAMHYGLRSANYPV 178
>PANK4_HUMAN (Q9NVE7) Pantothenate kinase 4 (EC 2.7.1.33) (Pantothenic acid| kinase 4) (hPanK4) Length = 773 Score = 27.3 bits (59), Expect = 8.8 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 13/76 (17%) Frame = +2 Query: 140 PCTLLVHFDKGSAAMANEIKADL---EGS--------DVAAKVEAMKRAVM--LLLNGET 280 PC L DKG AA+ E ADL EG A + E++K AV+ L Sbjct: 698 PCLDLSRLDKGLAALVRERGADLVVIEGMGRAVHTNYHAALRCESLKLAVIKNAWLAERL 757 Query: 281 LPTLFITVVRYVLPSE 328 LF + +Y +P+E Sbjct: 758 GGRLFSVIFKYEVPAE 773
>DRD2_BOVIN (P20288) D(2) dopamine receptor (Dopamine D2 receptor)| Length = 444 Score = 27.3 bits (59), Expect = 8.8 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 306 TTVMKSVGRVSPLRRSMTARFMASTL-----AATSLPSRSALISFAMAAEPLSKWTSSVH 142 T +MKS G RR + A A L ++TS P R+ + L+ S H Sbjct: 254 TVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHH 313 Query: 141 GLSMAPDLP 115 GL PD P Sbjct: 314 GLHSTPDSP 322
>ZN576_HUMAN (Q9H609) Zinc finger protein 576| Length = 170 Score = 27.3 bits (59), Expect = 8.8 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 9/66 (13%) Frame = -3 Query: 270 LRRSMTARFMASTL---------AATSLPSRSALISFAMAAEPLSKWTSSVHGLSMAPDL 118 ++R A F+A L A S PS ALI+ + P +K T V + P Sbjct: 53 MKREHPADFVAQKLQGVLFICFTCARSFPSSKALITHQRSHGPAAKPTLPVATTTAQPTF 112 Query: 117 PCTRAG 100 PC G Sbjct: 113 PCPDCG 118
>MYCLB_XENLA (P35805) L-myc B protein (L-myc 2 protein)| Length = 344 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 Query: 20 SPPSSGSQISIHLRRRSNHRYPTRRR 97 SP +SGS S L +R NH Y R+R Sbjct: 248 SPLASGSSDSEDLAKRKNHNYLERKR 273
>GCM2_DROME (Q9VLA2) Transcription factor glial cells missing 2 (Protein| glide-2) Length = 613 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -3 Query: 246 FMASTLAATSLPSRSALISFAMAAEPLSKWTSSVHGLSMAPDLP 115 + A+ AAT+ PS+S + +A + L+ + S G S A +P Sbjct: 359 YHATPAAATAAPSKSPSLPYACSISELAAYQQSSSGNSFAMGVP 402 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,797,807 Number of Sequences: 219361 Number of extensions: 683272 Number of successful extensions: 2752 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2415 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2752 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
