ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl22g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EDA_HUMAN (Q92838) Ectodysplasin-A (Ectodermal dysplasia protein... 28 5.6
2AGRN_CHICK (P31696) Agrin (Fragment) 28 7.3

>EDA_HUMAN (Q92838) Ectodysplasin-A (Ectodermal dysplasia protein) (EDA|
           protein) [Contains: Ectodysplasin-A, membrane form;
           Ectodysplasin-A, secreted form]
          Length = 391

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 88  PTKAPRQLDRQGIG--GAPGRKSRGNPSIFF 2
           P  APR+   QG G  GAP R   GN  + F
Sbjct: 13  PAAAPRERGSQGCGCGGAPARAGEGNSCLLF 43



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>AGRN_CHICK (P31696) Agrin (Fragment)|
          Length = 1955

 Score = 28.1 bits (61), Expect = 7.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 21  PRDFLPGAPPIPCRSSCRGALVGFG 95
           P  +    PP P R +CRG L GFG
Sbjct: 41  PNSYFTQTPPTP-RDACRGMLCGFG 64


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.126    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,902,821
Number of Sequences: 219361
Number of extensions: 164280
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 80,573,946
effective HSP length: 7
effective length of database: 79,038,419
effective search space used: 1896922056
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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