ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl22g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... 103 9e-20
2gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... 103 9e-20
3gb|AF099926.3| Caenorhabditis elegans cosmid T06A10, complete se... 38 4.3
4ref|NM_070597.2| Caenorhabditis elegans Maternal Effect Lethal f... 38 4.3

>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit
          mRNA sequence
          Length = 2863

 Score =  103 bits (52), Expect = 9e-20
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                      
Query: 23 ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 82
          |||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1  ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60

                      
Query: 83 ggtcgggttcgg 94
          |||||| |||||
Sbjct: 61 ggtcggattcgg 72



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>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit
          mRNA, complete cds
          Length = 2887

 Score =  103 bits (52), Expect = 9e-20
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                      
Query: 23 ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 82
          |||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1  ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60

                      
Query: 83 ggtcgggttcgg 94
          |||||| |||||
Sbjct: 61 ggtcggattcgg 72



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>gb|AF099926.3| Caenorhabditis elegans cosmid T06A10, complete sequence
          Length = 41278

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 59   tcgatcgagctgccgcggt 77
            |||||||||||||||||||
Sbjct: 8429 tcgatcgagctgccgcggt 8447



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>ref|NM_070597.2| Caenorhabditis elegans Maternal Effect Lethal family member
          (mel-46) (mel-46) mRNA, complete cds
          Length = 2959

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 59 tcgatcgagctgccgcggt 77
          |||||||||||||||||||
Sbjct: 50 tcgatcgagctgccgcggt 32


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 285,134
Number of Sequences: 3902068
Number of extensions: 285134
Number of successful extensions: 18947
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18943
Number of HSP's gapped (non-prelim): 4
length of query: 97
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 76
effective length of database: 17,151,101,840
effective search space: 1303483739840
effective search space used: 1303483739840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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