Clone Name | bastl22g06 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... | 103 | 9e-20 | 2 | gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... | 103 | 9e-20 | 3 | gb|AF099926.3| Caenorhabditis elegans cosmid T06A10, complete se... | 38 | 4.3 | 4 | ref|NM_070597.2| Caenorhabditis elegans Maternal Effect Lethal f... | 38 | 4.3 |
---|
>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA sequence Length = 2863 Score = 103 bits (52), Expect = 9e-20 Identities = 67/72 (93%) Strand = Plus / Plus Query: 23 ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 82 |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 1 ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60 Query: 83 ggtcgggttcgg 94 |||||| ||||| Sbjct: 61 ggtcggattcgg 72
>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA, complete cds Length = 2887 Score = 103 bits (52), Expect = 9e-20 Identities = 67/72 (93%) Strand = Plus / Plus Query: 23 ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 82 |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct: 1 ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60 Query: 83 ggtcgggttcgg 94 |||||| ||||| Sbjct: 61 ggtcggattcgg 72
>gb|AF099926.3| Caenorhabditis elegans cosmid T06A10, complete sequence Length = 41278 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 tcgatcgagctgccgcggt 77 ||||||||||||||||||| Sbjct: 8429 tcgatcgagctgccgcggt 8447
>ref|NM_070597.2| Caenorhabditis elegans Maternal Effect Lethal family member (mel-46) (mel-46) mRNA, complete cds Length = 2959 Score = 38.2 bits (19), Expect = 4.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 tcgatcgagctgccgcggt 77 ||||||||||||||||||| Sbjct: 50 tcgatcgagctgccgcggt 32 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 285,134 Number of Sequences: 3902068 Number of extensions: 285134 Number of successful extensions: 18947 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18943 Number of HSP's gapped (non-prelim): 4 length of query: 97 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 76 effective length of database: 17,151,101,840 effective search space: 1303483739840 effective search space used: 1303483739840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)