ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl22g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 gen... 42 1.5
2gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 geno... 42 1.5
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
4gb|AY109219.1| Zea mays PCO071871 mRNA sequence 42 1.5
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
6gb|M23528.1|AVINIFHDGK A.vinelandii nitrogenase 3 (anf) subunits... 42 1.5
7gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.9
8emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.9
9emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 40 5.9
10emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T pl... 40 5.9
11dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.9

>gb|AC079029.11| Oryza sativa chromosome 10 BAC OSJNBb0028C01 genomic sequence, complete
              sequence
          Length = 137366

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 105    gcccaacccaactccaccgtc 125
              |||||||||||||||||||||
Sbjct: 123321 gcccaacccaactccaccgtc 123301



to top

>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence, complete
              sequence
          Length = 135789

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 105    gcccaacccaactccaccgtc 125
              |||||||||||||||||||||
Sbjct: 111398 gcccaacccaactccaccgtc 111418



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 105      gcccaacccaactccaccgtc 125
                |||||||||||||||||||||
Sbjct: 19654207 gcccaacccaactccaccgtc 19654227



to top

>gb|AY109219.1| Zea mays PCO071871 mRNA sequence
          Length = 610

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 taccagcctccgccaccaccg 344
           |||||||||||||||||||||
Sbjct: 276 taccagcctccgccaccaccg 256



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 105      gcccaacccaactccaccgtc 125
                |||||||||||||||||||||
Sbjct: 19665467 gcccaacccaactccaccgtc 19665487



to top

>gb|M23528.1|AVINIFHDGK A.vinelandii nitrogenase 3 (anf) subunits H,D,G,K genes, complete
            cds, and ORFs
          Length = 6108

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 218  cggcgttccgcggccggcgcc 238
            |||||||||||||||||||||
Sbjct: 5067 cggcgttccgcggccggcgcc 5087



to top

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     cggcgccgttcccggcgccc 251
               ||||||||||||||||||||
Sbjct: 2680252 cggcgccgttcccggcgccc 2680271



to top

>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 226    cgcggccggcgccgttcccggcgc 249
              ||||||||||||||| ||||||||
Sbjct: 189356 cgcggccggcgccgtccccggcgc 189379



to top

>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 226    cgcggccggcgccgttcccggcgc 249
              ||||||||||||||| ||||||||
Sbjct: 101440 cgcggccggcgccgtccccggcgc 101463



to top

>emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome
          Length = 101016

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   ccgccaccaccgtcgggtgg 352
             ||||||||||||||||||||
Sbjct: 90848 ccgccaccaccgtcgggtgg 90829



to top

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 97      ccgccgccgcccaacccaac 116
               ||||||||||||||||||||
Sbjct: 2416134 ccgccgccgcccaacccaac 2416115


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,796,352
Number of Sequences: 3902068
Number of extensions: 2796352
Number of successful extensions: 54125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53830
Number of HSP's gapped (non-prelim): 295
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top