ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl22g01 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 123 bits (309), Expect = 2e-28 Identities = 61/107 (57%), Positives = 81/107 (75%) Frame = +1 Query: 103 KDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKVEA 282 K D++S +PF +EK AVLQEAR F++ ++ RRC ++TK+LYL+NQGE F +EA Sbjct: 7 KKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTMEA 66 Query: 283 TEVFFAVTKLFQSNDAGLRRLVYLMIKELSPSSDEVFIVTSSLMKDM 423 TE FFA+T+LFQSND LRR+ YL IKE++ S++V IVTSSL KDM Sbjct: 67 TEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDM 113
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 123 bits (308), Expect = 2e-28 Identities = 61/107 (57%), Positives = 80/107 (74%) Frame = +1 Query: 103 KDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKVEA 282 K D++S +PF +EK AVLQEAR F++ ++ RRC ++TK+LYL+NQGE F EA Sbjct: 7 KKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTTEA 66 Query: 283 TEVFFAVTKLFQSNDAGLRRLVYLMIKELSPSSDEVFIVTSSLMKDM 423 TE FFA+T+LFQSND LRR+ YL IKE++ S++V IVTSSL KDM Sbjct: 67 TEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDM 113
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 121 bits (304), Expect = 6e-28 Identities = 61/107 (57%), Positives = 80/107 (74%) Frame = +1 Query: 103 KDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKVEA 282 K D++S +PF +EK AVLQEAR F++ ++ R+C+ ++TK+LYLINQGE EA Sbjct: 7 KKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEA 66 Query: 283 TEVFFAVTKLFQSNDAGLRRLVYLMIKELSPSSDEVFIVTSSLMKDM 423 TE FFA+TKLFQSND LRR+ YL IKE+S +++V IVTSSL KDM Sbjct: 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDM 113
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 121 bits (304), Expect = 6e-28 Identities = 61/107 (57%), Positives = 80/107 (74%) Frame = +1 Query: 103 KDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKVEA 282 K D++S +PF +EK AVLQEAR F++ ++ R+C+ ++TK+LYLINQGE EA Sbjct: 7 KKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEA 66 Query: 283 TEVFFAVTKLFQSNDAGLRRLVYLMIKELSPSSDEVFIVTSSLMKDM 423 TE FFA+TKLFQSND LRR+ YL IKE+S +++V IVTSSL KDM Sbjct: 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDM 113
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 115 bits (289), Expect = 3e-26 Identities = 57/109 (52%), Positives = 80/109 (73%) Frame = +1 Query: 97 MKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKV 276 MK + D + + + ++K +VLQEARAF++ ++AR+C +++KL+Y+I QGES + Sbjct: 1 MKTNKKDEETGGNVYAHLDKTSVLQEARAFNETPINARKCCFILSKLIYIIQQGESIGRT 60 Query: 277 EATEVFFAVTKLFQSNDAGLRRLVYLMIKELSPSSDEVFIVTSSLMKDM 423 EATE FF VTKL+QS D LRR+VYL +KEL+ SD+V IVTSSL KDM Sbjct: 61 EATEAFFGVTKLWQSKDVSLRRMVYLAVKELAEVSDDVIIVTSSLTKDM 109
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 99.4 bits (246), Expect = 3e-21 Identities = 49/109 (44%), Positives = 74/109 (67%) Frame = +1 Query: 94 YMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTK 273 Y KKDDD + S F + + V Q+ARAF+ + R+ ++++K+ YLI GE F + Sbjct: 3 YSKKDDDGDE---SIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQE 59 Query: 274 VEATEVFFAVTKLFQSNDAGLRRLVYLMIKELSPSSDEVFIVTSSLMKD 420 +ATE+FF +TKLFQ D LR+ VY++IKELS +++V ++TSS+MKD Sbjct: 60 KQATELFFGITKLFQHKDPSLRQFVYIIIKELSVVAEDVIMITSSIMKD 108
>COPG_YEAST (P32074) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 935 Score = 80.1 bits (196), Expect = 2e-15 Identities = 40/94 (42%), Positives = 67/94 (71%), Gaps = 1/94 (1%) Frame = +1 Query: 151 EKGAVLQEA-RAFHDPQLDARRCSQVITKLLYLINQGESFTKVEATEVFFAVTKLFQSND 327 +K + Q+ F++ ++++RC +I++LL L+ QGE+F + EAT +FF+++KLFQ + Sbjct: 19 DKMTIYQDCMNTFNESPVNSKRCRLLISRLLRLLAQGETFPQNEATALFFSISKLFQHQN 78 Query: 328 AGLRRLVYLMIKELSPSSDEVFIVTSSLMKDMNS 429 LR+ VYL IKELS S++V + TSS+MKD+ + Sbjct: 79 DPLRQAVYLAIKELSGISEDVLMATSSIMKDVQN 112
>MATK_ZANAE (Q9GHE5) Maturase K (Intron maturase)| Length = 512 Score = 35.8 bits (81), Expect = 0.044 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Frame = -2 Query: 320 DWNNLVTAKKTSVASTFVKDSPWLIK--YNNLVITCEHLL 207 +WNN++T KK+S F K++P L + YN+ V+ CE +L Sbjct: 191 NWNNIITPKKSSYG--FSKENPRLFRFLYNSYVVECESIL 228
>MATK_ANCDI (Q8MEC9) Maturase K (Intron maturase)| Length = 511 Score = 35.4 bits (80), Expect = 0.058 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%) Frame = -2 Query: 320 DWNNLVTAKKTSVASTFVKDSP---WLIKYNNLVITCEHLL 207 +WNNL+T KK+S F K++P W + YN+ V+ CE +L Sbjct: 191 NWNNLITQKKSSYG--FSKENPRLFWFL-YNSYVVECESIL 228
>MATK_ARITO (Q8MEC8) Maturase K (Intron maturase)| Length = 512 Score = 35.0 bits (79), Expect = 0.075 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Frame = -2 Query: 320 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 207 +WNNL+T KK++ F K++P +L YN+ V+ CE +L Sbjct: 191 NWNNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESIL 229
>MATK_AMOTI (Q8MED5) Maturase K (Intron maturase)| Length = 512 Score = 35.0 bits (79), Expect = 0.075 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Frame = -2 Query: 320 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 207 +WNNL+T KK++ F K++P +L YN+ V+ CE +L Sbjct: 191 NWNNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESIL 229
>MATK_AMOBY (Q8MEH7) Maturase K (Intron maturase)| Length = 512 Score = 35.0 bits (79), Expect = 0.075 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Frame = -2 Query: 320 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 207 +WNNL+T KK++ F K++P +L YN+ V+ CE +L Sbjct: 191 NWNNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESIL 229
>MATK_AMOPO (Q8MEE6) Maturase K (Intron maturase)| Length = 512 Score = 33.5 bits (75), Expect = 0.22 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%) Frame = -2 Query: 320 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHL 210 +WNNL+T KK++ F K++P +L YN+ V+ CE + Sbjct: 191 NWNNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESI 228
>MATK_FILMA (Q8MEC7) Maturase K (Intron maturase)| Length = 512 Score = 31.6 bits (70), Expect = 0.83 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%) Frame = -2 Query: 320 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHL 210 +W+NL+T KK++ F K++P +L YN+ V+ CE + Sbjct: 191 NWSNLITPKKSNYYG-FSKENPRLFLFLYNSYVVECESI 228
>QUEA_THIDN (Q30PZ7) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 342 Score = 31.2 bits (69), Expect = 1.1 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = +1 Query: 91 PYMKKDDD-DSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGE-S 264 PY++++D+ D +IEY F E+GAV + H + R T ++ G + Sbjct: 159 PYIQREDNKDDEIEYQSVFAKEEGAVAAPTASLHFTKEQHERVCTKFTHAYITLHVGSGT 218 Query: 265 FTKVEATEV 291 F VE ++ Sbjct: 219 FKPVECEKI 227
>VDH_STRCO (Q06539) Valine dehydrogenase (EC 1.4.1.-) (ValDH)| Length = 363 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +1 Query: 79 EMAQPYMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKL 237 ++A P ++KD D I Y+P + + G V+Q A H D RC +K+ Sbjct: 276 QLAHPGVEKDLADRGILYAPDYVVNAGGVIQVADELHG--FDFDRCKAKASKI 326
>MATK_LENCU (Q8MCR6) Maturase K (Intron maturase)| Length = 507 Score = 30.4 bits (67), Expect = 1.9 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = -2 Query: 341 LLRPASLDWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEH 213 LLR +WN+ +T KK STF K +P +L YN V CE+ Sbjct: 176 LLRLFLCNWNSFITTKKKKSISTFSKINPRFFLFLYNFYV--CEY 218
>VDH_STRAL (O69056) Valine dehydrogenase (EC 1.4.1.-) (ValDH)| Length = 363 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +1 Query: 79 EMAQPYMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKL 237 ++A P ++KD D I Y+P + + G V+Q A H D RC K+ Sbjct: 276 QLAHPGVEKDLADRGILYAPDYVVNAGGVIQVADELHG--FDFDRCKAKAAKI 326
>MATK_CRAPL (Q5GAA8) Maturase K (Intron maturase)| Length = 507 Score = 30.0 bits (66), Expect = 2.4 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%) Frame = -2 Query: 317 WNNLVTAKKTSVASTFVKDSPWLIKYNNLVITCE-----------HLLASSWGSWKARAS 171 WN+L+T KK S + + +L YN+ V E HLL++S+G + R Sbjct: 184 WNSLITPKKASSSFSKKNQRLFLFLYNSHVCEYEYFFVFIRKQSSHLLSTSYGVFLERIY 243 Query: 170 C 168 C Sbjct: 244 C 244
>ZN384_HUMAN (Q8TF68) Zinc finger protein 384 (Nuclear matrix transcription| factor 4) (Nuclear matrix protein 4) (CAG repeat protein 1) (CAS-interacting zinc finger protein) Length = 576 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +1 Query: 19 PAPPLERRMPRSLAGDLTDPEMAQPYMKKDDDDSD 123 P PP R+ R L L PEM PY+ +DD D Sbjct: 188 PKPPRGRKKKRMLESGL--PEMNDPYVLSPEDDDD 220
>COAT_PAVHH (P03136) Coat protein VP1 [Contains: Coat protein VP2]| Length = 722 Score = 29.6 bits (65), Expect = 3.2 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = -2 Query: 413 INELVTMKTSSDDGESSLIIKYTSLLRPASLDWNNLVTAKKTSVASTFVKDSPWL 249 ++ +VT T G I+K+ + LRP +L WN + A SVA++++ WL Sbjct: 651 VSRIVTYSTFYWKG----ILKFKAKLRP-NLTWNPVYQATTDSVANSYMNVKKWL 700
>MATK_SPIIN (Q8WHM7) Maturase K (Intron maturase)| Length = 510 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = -2 Query: 314 NNLVTAKKTSVASTFVKDSPWLIK--YNNLVITCEHL 210 NN +T KK+S F KD+P L + YN+ V+ CE + Sbjct: 193 NNCITPKKSSYG--FSKDNPRLYRFLYNSYVVECESI 227
>YQI9_CAEEL (Q09507) Hypothetical protein C45G9.9| Length = 294 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Frame = +1 Query: 1 TKPTRHPAPPLE-RRMPRSLAGDLTDPEM-----AQPYMKKDDDDSD 123 T P P P E + +P+ GD + P + A+ Y K+D DD D Sbjct: 165 TAPATLPPPSAESKHLPQDPPGDASSPRVQRQYTAEKYSKEDQDDDD 211
>YQI4_CAEEL (Q09505) Hypothetical protein C45G9.4| Length = 292 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Frame = +1 Query: 1 TKPTRHPAPPLE-RRMPRSLAGDLTDPEM-----AQPYMKKDDDDSD 123 T P P P E + +P+ GD + P + A+ Y K+D DD D Sbjct: 163 TAPATLPPPSAESKHLPQDPPGDASSPRVQRQYTAEKYSKEDQDDDD 209
>HABP2_BOVIN (Q5E9Z2) Hyaluronan-binding protein 2 precursor (EC 3.4.21.-)| [Contains: Hyaluronan-binding protein 2 50 kDa heavy chain; Hyaluronan-binding protein 2 50 kDa heavy chain alternate form; Hyaluronan-binding protein 2 27 kDa light chain; Hyaluro Length = 558 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +1 Query: 199 LDARRCSQVITKLLYLINQGESFTKVEATEVFFAVTKLFQ 318 L A C+++ TK L ++ + TK E E F V K+F+ Sbjct: 356 LTAAHCTEIKTKYLKVVLGDQDLTKTEFHEQSFGVQKIFK 395
>AP4B1_MOUSE (Q9WV76) AP-4 complex subunit beta-1 (Adapter-related protein| complex 4 beta-1 subunit) (Beta subunit of AP-4) (AP-4 adapter complex beta subunit) Length = 739 Score = 29.3 bits (64), Expect = 4.1 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Frame = +1 Query: 136 PFFGIEKGAVLQEARAFHDP--QLDARRCSQVITKLLYLINQGESFTKVEATEVFFAVTK 309 P+ G E V + +A +P Q D R VI +++ + QG ++ ++VF + K Sbjct: 2 PYLGSED-VVKELKKALCNPHIQADRLRYRNVIQRVIRHMTQG-----LDMSDVFMEMVK 55 Query: 310 LFQSNDAGLRRLVYLMIKELSP-SSDEVFIVTSSLMKD 420 + D ++LVYL + +P D + ++L KD Sbjct: 56 ASATVDIVQKKLVYLYMGTYAPLKPDLALLAINTLCKD 93
>MATK_NUPVA (O98635) Maturase K (Intron maturase)| Length = 505 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%) Frame = -2 Query: 320 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 207 +WN+L+T KK++ S F K++ +L YN+ V CE +L Sbjct: 189 NWNSLITPKKST--SIFSKENQRLFLFLYNSHVYECESVL 226
>MATK_ACOCL (Q9GHG9) Maturase K (Intron maturase)| Length = 511 Score = 28.9 bits (63), Expect = 5.4 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = -2 Query: 320 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 207 +WN+L+T KK S++ F K + +L YN+ V CE L Sbjct: 190 NWNSLITPKK-SISFLFSKGNQRLFLFLYNSYVFECESAL 228
>MALR_STRR6 (P0A4T2) HTH-type transcriptional regulator malR (Maltose operon| transcriptional repressor) Length = 327 Score = 28.9 bits (63), Expect = 5.4 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 67 LTDPEMAQPYMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDA 207 LT E A + K D++ I ++ F EKG + HDPQ+DA Sbjct: 199 LTGYEQALKHYKLTTDNNRIYFADEFLEEKGYKFSKRLFKHDPQIDA 245
>MALR_STRPN (P0A4T1) HTH-type transcriptional regulator malR (Maltose operon| transcriptional repressor) Length = 327 Score = 28.9 bits (63), Expect = 5.4 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 67 LTDPEMAQPYMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDA 207 LT E A + K D++ I ++ F EKG + HDPQ+DA Sbjct: 199 LTGYEQALKHYKLTTDNNRIYFADEFLEEKGYKFSKRLFKHDPQIDA 245
>MTLD_MYCPN (P78008) Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)| Length = 364 Score = 28.9 bits (63), Expect = 5.4 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = +1 Query: 259 ESFTKVEATEVFFAVTKLFQSNDAGLRRL--VYLMIKELSPSSD 384 E K+ E F+A+ KLF+ N L + VYLM+ + + + D Sbjct: 278 EPLRKLNQNERFYAIYKLFKKNKIALNNILQVYLMVLKTNITDD 321
>MATK_NYMOD (O98637) Maturase K (Intron maturase)| Length = 509 Score = 28.9 bits (63), Expect = 5.4 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%) Frame = -2 Query: 320 DWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEHLL 207 +WN+L+T+ S F K++ +L YN+ V CE +L Sbjct: 191 NWNSLITSTSNKSISIFSKENQRLFLFLYNSHVYECESVL 230
>YS86_CAEEL (Q09382) Hypothetical protein ZK945.6| Length = 216 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +1 Query: 25 PPLERRMPRSLAGDLTDPEMAQPYMKKDDDDSDIEYSP 138 P L +M S A DL+ M Q Y+K DD D+ + P Sbjct: 79 PSLNTQMSFSTASDLSS--MEQDYVKASDDPFDLNHQP 114
>MATK_LENER (Q8MCR5) Maturase K (Intron maturase)| Length = 507 Score = 28.5 bits (62), Expect = 7.1 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -2 Query: 341 LLRPASLDWNNLVTAKKTSVASTFVKDSP--WLIKYNNLVITCEH 213 LLR +WN+ +T K STF K +P +L YN V CE+ Sbjct: 176 LLRLFLCNWNSFITTKNKKSISTFSKINPRFFLFLYNFYV--CEY 218
>QUEA_CAMJE (Q9PHT9) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 342 Score = 28.5 bits (62), Expect = 7.1 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Frame = +1 Query: 91 PYMKKDDDDSDI-EYSPFFGIEKGAVLQEARAFH--DPQLDARRCSQVITKLLYLINQGE 261 PY+K++D+ SD+ +Y F GAV + H + L+ R I L + G Sbjct: 160 PYIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG- 218 Query: 262 SFTKVEATEV 291 +F VE + Sbjct: 219 TFKSVECENI 228
>ZN384_RAT (Q9EQJ4) Zinc finger protein 384 (Nuclear matrix transcription| factor 4) (Nuclear matrix protein 4) (Cas-associated zinc finger protein) Length = 579 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +1 Query: 19 PAPPLERRMPRSLAGDLTDPEMAQPYMKKDDDDSD 123 P PP R+ R L L PEM PY+ DD D Sbjct: 189 PKPPRGRKKKRMLESGL--PEMNDPYVLAPGDDDD 221
>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3| Length = 944 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +1 Query: 22 APPLERRMPRSLAGDLTDPEMAQPYMKKDDDDSD 123 A PL AGD +P A P ++ D DDS+ Sbjct: 874 AMPLAANRSTDAAGDPAEPTAALPIIRSDGDDSE 907
>TETW_BUTFI (O52836) Tetracycline resistance protein tetW (Tet(W))| Length = 639 Score = 28.1 bits (61), Expect = 9.2 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Frame = +2 Query: 146 GLRRGLF---------CRRHGLSMIPSLMPEDARKLSPSYYI*LTKESPLQRLRP 283 GL +GLF C +GL P P D R L+P KES Q L P Sbjct: 484 GLEQGLFGWNVTDCKICFEYGLYYSPVSTPADFRSLAPIVLEQALKESGTQLLEP 538
>SORC3_HUMAN (Q9UPU3) VPS10 domain-containing receptor SorCS3 precursor| Length = 1222 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -3 Query: 220 ASIFWHQAGDHGKPVPPAEQPPSQS 146 A I W G G+P PA +PP+ S Sbjct: 33 AEITWDATGGPGRPAAPASRPPALS 57
>VDH_STRCM (Q53872) Valine dehydrogenase (EC 1.4.1.-) (ValDH)| Length = 358 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +1 Query: 79 EMAQPYMKKDDDDSDIEYSPFFGIEKGAVLQEARAFHDPQLDARRCSQVITKL 237 ++A P ++KD D I Y+P + + G V+Q A D RC +K+ Sbjct: 274 QLAHPGVEKDLADRSILYAPDYVVNAGGVIQVADELRG--FDFDRCKAKASKI 324
>SYH_PROMM (Q7V4P3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 436 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +1 Query: 142 FGIEKGAVLQEARAFHDPQLDARRCSQVITKLLYLINQGESFTKV 276 FG+E+ +L EA A +P A R LY++N+GE +V Sbjct: 305 FGMERLMLLLEAAASINPSGSAARLRASTRPDLYVVNRGEQAERV 349 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,836,946 Number of Sequences: 219361 Number of extensions: 1052074 Number of successful extensions: 3583 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 3461 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3576 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
