ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl22f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468330.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
3dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
4dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
5emb|AL121756.14|HSDJ726C3 Human DNA sequence from clone RP4-726C... 44 0.29
6gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.29
7emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4,... 44 0.29
8emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4,... 44 0.29
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.29
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.29
11dbj|AK067306.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.29
13gb|AC109509.20| Mus musculus chromosome 14, clone RP23-16M15, co... 42 1.2
14gb|AC147054.4| Pan troglodytes BAC clone RP43-145A1 from 7, comp... 42 1.2
15gb|AC165293.2| Mus musculus BAC clone RP23-268A5 from chromosome... 42 1.2
16gb|AC183833.2| Pan troglodytes BAC clone CH251-141C5 from chromo... 42 1.2
17gb|AC093168.3| Homo sapiens BAC clone RP11-148M21 from 7, comple... 42 1.2
18gb|AC112342.14| Rattus norvegicus 14 BAC CH230-253H12 (Children'... 42 1.2
19emb|AL591916.8| Human DNA sequence from clone RP11-168B8 on chro... 42 1.2
20gb|DQ429871.1| Sorghum propinquum locus pSB1459 genomic sequence 42 1.2
21gb|DQ429870.1| Sorghum bicolor voucher PI585454 locus pSB1459 ge... 42 1.2
22gb|DQ429869.1| Sorghum bicolor voucher PI267539 locus pSB1459 ge... 42 1.2
23gb|DQ429868.1| Sorghum bicolor voucher PI267408 locus pSB1459 ge... 42 1.2
24gb|DQ429867.1| Sorghum bicolor voucher PI221607 locus pSB1459 ge... 42 1.2
25gb|DQ429866.1| Sorghum bicolor voucher PI152702 locus pSB1459 ge... 42 1.2
26gb|DQ429865.1| Sorghum bicolor voucher NSL92371 locus pSB1459 ge... 42 1.2
27gb|DQ429864.1| Sorghum bicolor voucher NSL87902 locus pSB1459 ge... 42 1.2
28gb|DQ429863.1| Sorghum bicolor voucher NSL87666 locus pSB1459 ge... 42 1.2
29gb|DQ429862.1| Sorghum bicolor voucher NSL77217 locus pSB1459 ge... 42 1.2
30gb|DQ429861.1| Sorghum bicolor voucher NSL77034 locus pSB1459 ge... 42 1.2
31gb|DQ429860.1| Sorghum bicolor voucher NSL56174 locus pSB1459 ge... 42 1.2
32gb|DQ429859.1| Sorghum bicolor voucher NSL56003 locus pSB1459 ge... 42 1.2
33gb|DQ429858.1| Sorghum bicolor voucher NSL55243 locus pSB1459 ge... 42 1.2
34gb|DQ429857.1| Sorghum bicolor voucher NSL51365 locus pSB1459 ge... 42 1.2
35gb|DQ429856.1| Sorghum bicolor voucher NSL51030 locus pSB1459 ge... 42 1.2
36gb|DQ429855.1| Sorghum bicolor voucher BTx623 locus pSB1459 geno... 42 1.2
37dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 1.2
38gb|AC009093.10| Homo sapiens chromosome 16 clone RP11-426C22, co... 42 1.2
39emb|AL929518.16| Zebrafish DNA sequence from clone CH211-163F10 ... 42 1.2
40gb|AC007009.2|AC007009 Homo sapiens BAC clone RP11-560C1 from 7p... 42 1.2
41gb|AC025279.6| Homo sapiens chromosome 16 clone RP11-231C14, com... 42 1.2
42gb|AC004169.3|AC004169 Homo sapiens chromosome 4 clone C0236G06 ... 42 1.2
43gb|AC005895.1|AC005895 Homo sapiens chromosome 5, Bac clone 5m9 ... 42 1.2
44emb|AL844548.7| Mouse DNA sequence from clone RP23-263D22 on chr... 42 1.2
45emb|CT025540.12| Mouse DNA sequence from clone RP24-280B23 on ch... 42 1.2
46gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 4.6
47gb|AY960120.1| Protacanthamoeba bohemica small subunit ribosomal... 40 4.6
48gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 4.6
49ref|XM_755792.1| Ustilago maydis 521 hypothetical protein (UM047... 40 4.6
50gb|AC123818.4| Mus musculus BAC clone RP24-266A12 from chromosom... 40 4.6
51gb|AC025778.8| Homo sapiens chromosome 16 clone CTD-2504F3, comp... 40 4.6
52emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete ch... 40 4.6
53gb|AC074389.8| Homo sapiens BAC clone RP11-510K8 from 7, complet... 40 4.6
54emb|AL160412.14| Human DNA sequence from clone RP5-827E24 on chr... 40 4.6
55emb|AL031283.26|HS467K16 Human DNA sequence from clone RP3-467K1... 40 4.6
56emb|AL008720.1|HS343C1 Human DNA sequence from clone CTA-343C1 o... 40 4.6
57gb|BT009329.1| Triticum aestivum clone wlm24.pk0021.h1:fis, full... 40 4.6
58gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 4.6
59gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Ca... 40 4.6
60gb|AC005414.2| Homo sapiens 12p13.3 PAC RPCI4-696F19 (Roswell Pa... 40 4.6
61gb|AC023950.6| Homo sapiens chromosome 11, clone RP11-808N1, com... 40 4.6
62gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.6
63gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome 40 4.6
64dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.6
65gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.6
66dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
67gb|AC132939.23| Mus musculus chromosome 5, clone RP24-91I11, com... 40 4.6
68gb|M77475.1|BLYSIP1A Hordeum vulgare seed imbitition protein (Si... 40 4.6 
>ref|XM_468330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2748

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 266 cgaccccgttcaggacgcccgcctccaagcaccgcctccatttcccg 312
           |||||||| ||| ||||||||| ||||||||||||||||| ||||||
Sbjct: 62  cgaccccgctcaagacgcccgcatccaagcaccgcctccacttcccg 108
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                               
Query: 266      cgaccccgttcaggacgcccgcctccaagcaccgcctccatttcccg 312
                |||||||| ||| ||||||||| ||||||||||||||||| ||||||
Sbjct: 34650805 cgaccccgctcaagacgcccgcatccaagcaccgcctccacttcccg 34650851



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 308      tcccgcccgcctccaccccc 327
                ||||||||||||||||||||
Sbjct: 16466627 tcccgcccgcctccaccccc 16466608
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>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1116_E04
          Length = 94096

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                           
Query: 266  cgaccccgttcaggacgcccgcctccaagcaccgcctccatttcccg 312
            |||||||| ||| ||||||||| ||||||||||||||||| ||||||
Sbjct: 7756 cgaccccgctcaagacgcccgcatccaagcaccgcctccacttcccg 7802
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>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1112_G06
          Length = 122580

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                             
Query: 266    cgaccccgttcaggacgcccgcctccaagcaccgcctccatttcccg 312
              |||||||| ||| ||||||||| ||||||||||||||||| ||||||
Sbjct: 117420 cgaccccgctcaagacgcccgcatccaagcaccgcctccacttcccg 117466
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>emb|AL121756.14|HSDJ726C3 Human DNA sequence from clone RP4-726C3 on chromosome 20 Contains the
             C20orf185 gene for the possible ortholog of potential
             ligand_binding protein RYA3 (Rat), the C20orf186 gene for
             the possible ortholog of potential ligand_binding protein
             RY2G5 (Rat), the 5' end of the SPAG4L gene for sperm
             associated antigen 4-like, a novel gene, a FAM16AX (family
             with sequence similarity 16, member A, X-linked)
             pseudogene, the BPIL3 gene for
             bactericidal/permeability-increasing protein-like 3 and a
             CpG island, complete sequence
          Length = 129502

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 67    ccatccacccacccaccaatca 88
             ||||||||||||||||||||||
Sbjct: 36739 ccatccacccacccaccaatca 36760
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>gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0023F01, complete sequence
          Length = 145009

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 197   tggcgccggtgccgacgccgtcgtcg 222
             ||||| ||||||||||||||||||||
Sbjct: 57389 tggcgacggtgccgacgccgtcgtcg 57414
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>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11,
              complete sequence
          Length = 143582

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 38/42 (90%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                        
Query: 284    ccgcctccaagcaccgcctccatttcccgcccgcctccaccc 325
              ||||||||| || ||||||||||||||| |||||| ||||||
Sbjct: 118283 ccgcctcca-gcgccgcctccatttcccccccgcccccaccc 118323
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>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24,
             complete sequence
          Length = 164577

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 38/42 (90%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                       
Query: 284   ccgcctccaagcaccgcctccatttcccgcccgcctccaccc 325
             ||||||||| || ||||||||||||||| |||||| ||||||
Sbjct: 60903 ccgcctcca-gcgccgcctccatttcccccccgcccccaccc 60943
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 38/42 (90%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                          
Query: 284      ccgcctccaagcaccgcctccatttcccgcccgcctccaccc 325
                ||||||||| || ||||||||||||||| |||||| ||||||
Sbjct: 25334344 ccgcctcca-gcgccgcctccatttcccccccgcccccaccc 25334384
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 197      tggcgccggtgccgacgccgtcgtcg 222
                ||||| ||||||||||||||||||||
Sbjct: 26532331 tggcgacggtgccgacgccgtcgtcg 26532306
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>dbj|AK067306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100C22, full
           insert sequence
          Length = 5032

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 38/42 (90%), Gaps = 1/42 (2%)
 Strand = Plus / Minus

                                                     
Query: 284 ccgcctccaagcaccgcctccatttcccgcccgcctccaccc 325
           ||||||||| || ||||||||||||||| |||||| ||||||
Sbjct: 172 ccgcctcca-gcgccgcctccatttcccccccgcccccaccc 132
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 197      tggcgccggtgccgacgccgtcgtcg 222
                ||||| ||||||||||||||||||||
Sbjct: 26857595 tggcgacggtgccgacgccgtcgtcg 26857570
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>gb|AC109509.20| Mus musculus chromosome 14, clone RP23-16M15, complete sequence
          Length = 216410

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    ccatccacccacccaccaatc 87
             |||||||||||||||||||||
Sbjct: 30975 ccatccacccacccaccaatc 30995



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    ccatccacccacccaccaat 86
             ||||||||||||||||||||
Sbjct: 31306 ccatccacccacccaccaat 31325
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>gb|AC147054.4| Pan troglodytes BAC clone RP43-145A1 from 7, complete sequence
          Length = 153627

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 67     ccatccacccacccaccaatc 87
              |||||||||||||||||||||
Sbjct: 130490 ccatccacccacccaccaatc 130510
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>gb|AC165293.2| Mus musculus BAC clone RP23-268A5 from chromosome 12, complete sequence
          Length = 179330

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 67    ccatccacccacccaccaatc 87
             |||||||||||||||||||||
Sbjct: 98244 ccatccacccacccaccaatc 98224
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>gb|AC183833.2| Pan troglodytes BAC clone CH251-141C5 from chromosome 7, complete
             sequence
          Length = 155911

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    ccatccacccacccaccaatc 87
             |||||||||||||||||||||
Sbjct: 59718 ccatccacccacccaccaatc 59738
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>gb|AC093168.3| Homo sapiens BAC clone RP11-148M21 from 7, complete sequence
          Length = 148689

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 67     ccatccacccacccaccaatc 87
              |||||||||||||||||||||
Sbjct: 101527 ccatccacccacccaccaatc 101547
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>gb|AC112342.14| Rattus norvegicus 14 BAC CH230-253H12 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 150292

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 67    ccatccacccacccaccaatc 87
             |||||||||||||||||||||
Sbjct: 94446 ccatccacccacccaccaatc 94426
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>emb|AL591916.8| Human DNA sequence from clone RP11-168B8 on chromosome 1 Contains the 5'
              end of a novel gene (FLJ36179), complete sequence
          Length = 159159

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 67     ccatccacccacccaccaatc 87
              |||||||||||||||||||||
Sbjct: 112330 ccatccacccacccaccaatc 112350
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>gb|DQ429871.1| Sorghum propinquum locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429870.1| Sorghum bicolor voucher PI585454 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429869.1| Sorghum bicolor voucher PI267539 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429868.1| Sorghum bicolor voucher PI267408 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429867.1| Sorghum bicolor voucher PI221607 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429866.1| Sorghum bicolor voucher PI152702 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429865.1| Sorghum bicolor voucher NSL92371 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429864.1| Sorghum bicolor voucher NSL87902 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429863.1| Sorghum bicolor voucher NSL87666 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429862.1| Sorghum bicolor voucher NSL77217 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429861.1| Sorghum bicolor voucher NSL77034 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429860.1| Sorghum bicolor voucher NSL56174 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429859.1| Sorghum bicolor voucher NSL56003 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429858.1| Sorghum bicolor voucher NSL55243 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429857.1| Sorghum bicolor voucher NSL51365 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429856.1| Sorghum bicolor voucher NSL51030 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429855.1| Sorghum bicolor voucher BTx623 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 cgccggtgccgacgccgtcgtcgcg 224
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 293     agcaccgcctccatttcccgc 313
               |||||||||||||||||||||
Sbjct: 3489631 agcaccgcctccatttcccgc 3489611
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>gb|AC009093.10| Homo sapiens chromosome 16 clone RP11-426C22, complete sequence
          Length = 207997

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 67     ccatccacccacccaccaatc 87
              |||||||||||||||||||||
Sbjct: 201492 ccatccacccacccaccaatc 201472
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>emb|AL929518.16| Zebrafish DNA sequence from clone CH211-163F10 in linkage group 2,
              complete sequence
          Length = 162473

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 67     ccatccacccacccaccaatc 87
              |||||||||||||||||||||
Sbjct: 144278 ccatccacccacccaccaatc 144298
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>gb|AC007009.2|AC007009 Homo sapiens BAC clone RP11-560C1 from 7p22-p21, complete sequence
          Length = 152523

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    ccatccacccacccaccaatc 87
             |||||||||||||||||||||
Sbjct: 65626 ccatccacccacccaccaatc 65646
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>gb|AC025279.6| Homo sapiens chromosome 16 clone RP11-231C14, complete sequence
          Length = 171940

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 67   ccatccacccacccaccaatc 87
            |||||||||||||||||||||
Sbjct: 7524 ccatccacccacccaccaatc 7504
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>gb|AC004169.3|AC004169 Homo sapiens chromosome 4 clone C0236G06 map 4p16, complete sequence
          Length = 189805

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    ccatccacccacccaccaatc 87
             |||||||||||||||||||||
Sbjct: 77309 ccatccacccacccaccaatc 77329



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    ccatccacccacccaccaatc 87
             |||||||||||||||||||||
Sbjct: 77173 ccatccacccacccaccaatc 77193
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>gb|AC005895.1|AC005895 Homo sapiens chromosome 5, Bac clone 5m9 (LBNL H220), complete sequence
          Length = 87857

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    ccatccacccacccaccaatc 87
             |||||||||||||||||||||
Sbjct: 17921 ccatccacccacccaccaatc 17941
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>emb|AL844548.7| Mouse DNA sequence from clone RP23-263D22 on chromosome 2, complete
              sequence
          Length = 198946

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 67     ccatccacccacccaccaatc 87
              |||||||||||||||||||||
Sbjct: 165342 ccatccacccacccaccaatc 165322
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>emb|CT025540.12| Mouse DNA sequence from clone RP24-280B23 on chromosome 12, complete
              sequence
          Length = 199060

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 67     ccatccacccacccaccaatc 87
              |||||||||||||||||||||
Sbjct: 196557 ccatccacccacccaccaatc 196577
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 323     ccccccgcggcgcgggcggggccg 346
               ||||||| ||||||||||||||||
Sbjct: 2344309 ccccccggggcgcgggcggggccg 2344286
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>gb|AY960120.1| Protacanthamoeba bohemica small subunit ribosomal RNA gene,
           complete sequence
          Length = 2028

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 309 cccgcccgcctccacccccc 328
           ||||||||||||||||||||
Sbjct: 203 cccgcccgcctccacccccc 184
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 242     cgccgcaggcgacggcgggg 261
               ||||||||||||||||||||
Sbjct: 2473274 cgccgcaggcgacggcgggg 2473293
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>ref|XM_755792.1| Ustilago maydis 521 hypothetical protein (UM04738.1) partial mRNA
          Length = 1794

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 203 cggtgccgacgccgtcgtcg 222
           ||||||||||||||||||||
Sbjct: 334 cggtgccgacgccgtcgtcg 315
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>gb|AC123818.4| Mus musculus BAC clone RP24-266A12 from chromosome 18, complete sequence
          Length = 169506

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     ccatccacccacccaccaat 86
              ||||||||||||||||||||
Sbjct: 151642 ccatccacccacccaccaat 151661
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>gb|AC025778.8| Homo sapiens chromosome 16 clone CTD-2504F3, complete sequence
          Length = 208417

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     ccatccacccacccaccaat 86
              ||||||||||||||||||||
Sbjct: 187261 ccatccacccacccaccaat 187280



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     ccatccacccacccaccaat 86
              ||||||||||||||||||||
Sbjct: 187132 ccatccacccacccaccaat 187151



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     ccatccacccacccaccaat 86
              ||||||||||||||||||||
Sbjct: 187007 ccatccacccacccaccaat 187026



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     ccatccacccacccaccaat 86
              ||||||||||||||||||||
Sbjct: 186893 ccatccacccacccaccaat 186912
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>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12
          Length = 340900

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   caagcaccgcctccatttcc 310
             ||||||||||||||||||||
Sbjct: 57501 caagcaccgcctccatttcc 57520
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>gb|AC074389.8| Homo sapiens BAC clone RP11-510K8 from 7, complete sequence
          Length = 195782

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    catccacccacccaccaatc 87
             ||||||||||||||||||||
Sbjct: 84660 catccacccacccaccaatc 84641
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>emb|AL160412.14| Human DNA sequence from clone RP5-827E24 on chromosome 20 Contains ESTs,
              STSs and GSSs, complete sequence
          Length = 111824

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     catccacccacccaccaatc 87
              ||||||||||||||||||||
Sbjct: 100648 catccacccacccaccaatc 100667
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>emb|AL031283.26|HS467K16 Human DNA sequence from clone RP3-467K16 on chromosome 1p36.11-36.23
             Contains the 3' end of the gene for a novel protein
             (FLJ25234, KIAA1937, FLJ36564, FLJ39642, FLJ35981), three
             novel genes, the gene for a novel EF Hand
             domain-containing protein (MGC4342), the CTRC gene for
             chymotrypsin C (caldecrin) and a CpG island, complete
             sequence
          Length = 175964

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    ccatccacccacccaccaat 86
             ||||||||||||||||||||
Sbjct: 51074 ccatccacccacccaccaat 51055
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>emb|AL008720.1|HS343C1 Human DNA sequence from clone CTA-343C1 on chromosome 22, complete
             sequence
          Length = 198570

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    catccacccacccaccaatc 87
             ||||||||||||||||||||
Sbjct: 93700 catccacccacccaccaatc 93719
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>gb|BT009329.1| Triticum aestivum clone wlm24.pk0021.h1:fis, full insert mRNA
            sequence
          Length = 2668

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  cgccgtcgacgccgcaggcg 252
            ||||||||||||||||||||
Sbjct: 1314 cgccgtcgacgccgcaggcg 1295
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 234     gccgtcgacgccgcaggcga 253
               ||||||||||||||||||||
Sbjct: 1548024 gccgtcgacgccgcaggcga 1548043
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>gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 99727

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    catccacccacccaccaatc 87
             ||||||||||||||||||||
Sbjct: 53975 catccacccacccaccaatc 53956
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>gb|AC005414.2| Homo sapiens 12p13.3 PAC RPCI4-696F19 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 109370

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    ccatccacccacccaccaat 86
             ||||||||||||||||||||
Sbjct: 15782 ccatccacccacccaccaat 15763
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>gb|AC023950.6| Homo sapiens chromosome 11, clone RP11-808N1, complete sequence
          Length = 211464

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     ccatccacccacccaccaat 86
              ||||||||||||||||||||
Sbjct: 178137 ccatccacccacccaccaat 178118
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 221     cgcggacgggcccgccgtcgacgc 244
               |||||||||| |||||||||||||
Sbjct: 4639930 cgcggacggggccgccgtcgacgc 4639907



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 231     cccgccgtcgacgccgcaggcgac 254
               ||||||||||||||||| ||||||
Sbjct: 3760681 cccgccgtcgacgccgcgggcgac 3760704
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>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome
          Length = 195859

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 213   gccgtcgtcgcggacgggcccgccgtcg 240
             |||||||||| || ||||||||||||||
Sbjct: 15652 gccgtcgtcgtggccgggcccgccgtcg 15679
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 200     cgccggtgccgacgccgtcg 219
               ||||||||||||||||||||
Sbjct: 4999793 cgccggtgccgacgccgtcg 4999774
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 327     ccgcggcgcgggcggggccg 346
               ||||||||||||||||||||
Sbjct: 4358086 ccgcggcgcgggcggggccg 4358067
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>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0527E02
          Length = 176826

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   tcccgcccgcctccaccccc 327
             ||||||||||||||||||||
Sbjct: 40042 tcccgcccgcctccaccccc 40023
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>gb|AC132939.23| Mus musculus chromosome 5, clone RP24-91I11, complete sequence
          Length = 224918

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     catccacccacccaccaatc 87
              ||||||||||||||||||||
Sbjct: 159082 catccacccacccaccaatc 159101
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>gb|M77475.1|BLYSIP1A Hordeum vulgare seed imbitition protein (Sip1) gene, complete cds
          Length = 4788

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  cgccgtcgacgccgcaggcg 252
            ||||||||||||||||||||
Sbjct: 2858 cgccgtcgacgccgcaggcg 2839


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,000,426
Number of Sequences: 3902068
Number of extensions: 2000426
Number of successful extensions: 58024
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56437
Number of HSP's gapped (non-prelim): 1587
length of query: 347
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 325
effective length of database: 17,147,199,772
effective search space: 5572839925900
effective search space used: 5572839925900
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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