>OC17_CHICK (Q9PRS8) Ovocleidin-17 (OC-17)|
          Length = 142

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = -2

Query: 164 GERGREWSSWLVSRAPLWLAGERARADGRCCRLSDSE*PYGW 39
           G R   WS     R   W    +AR  GRC  L D E    W
Sbjct: 84  GSRSWRWSDGTAPRFASWHRTAKARRGGRCAALRDEEAFTSW 125

>TRUA_VIBVY (Q7M7J4) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 264

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 164 GERGREWSSWLVSRAPLWLAGERARADG 81
           GE+  EW  WL+      LAG  A+A+G
Sbjct: 208 GEQDPEWIKWLLEAKDRKLAGPTAKAEG 235

>TRUA_VIBVU (Q8CWK3) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 264

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 164 GERGREWSSWLVSRAPLWLAGERARADG 81
           GE+  EW  WL+      LAG  A+A+G
Sbjct: 208 GEQDPEWIKWLLEAKDRKLAGPTAKAEG 235

>TRUA_PHOPR (Q6LNU5) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 261

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 206 LLRLVGSGVKRALMGERGREWSSWLVSRAPLWLAGERARADG 81
           ++R +   + R   G+   EW  W++ +    +AGE A+A G
Sbjct: 194 MVRNIAGSLIRVGRGQETPEWMKWVLEQKDRRVAGETAKAAG 235

>TRUA_VIBPA (Q87MP1) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 264

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 206 LLRLVGSGVKRALMGERGREWSSWLVSRAPLWLAGERARADG 81
           ++R +   + +   GE   EW  WL+      LAG  A+A+G
Sbjct: 194 MVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATAKAEG 235

>AROC_PROAC (Q6A8I4) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 398

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
 Frame = -1

Query: 234 AYGVRSSRGAVATGGQRSEARLNG-----RAREGVEFLVGF 127
           AYG+ +  G+ + G +R +ARL G     +A +GVEF  GF
Sbjct: 227 AYGLPAGLGSHSQGDRRLDARLAGALMGIQAIKGVEFGDGF 267

>BCSC_SALTY (Q8ZLB8) Cellulose synthase operon protein C|
          Length = 1143

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = -2

Query: 179 KRALMGERGREWSSWLVSRAPLWLAGERARADGRCCRL-----SDSE*PYGWGGGVAG 21
           +R L  + G  W ++ +SR  LW AG+ A+AD +   L     +D E  Y +G  ++G
Sbjct: 471 RRRLALDPGSVWVTYRLSR-DLWQAGQHAQADAQMRSLAQQKPNDPEQVYAYGLYLSG 527

>IF2_ZYMMO (Q5NQ27) Translation initiation factor IF-2|
          Length = 989

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 121 ARETNQELHSLPRSPIKARFTPLPTSRNSATR 216
           A +  +E    PRSP   RFTP+   R  A R
Sbjct: 317 APKAREERSESPRSPAPRRFTPVSPPRREAPR 348

>TRUA_VIBF1 (Q5E455) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 262

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 164 GERGREWSSWLVSRAPLWLAGERARADGRCCRLSDSE*PYGW 39
           G++  EW  WL+      LAG  A+A+G    L D + P  W
Sbjct: 208 GKQKPEWIKWLLEAKDRKLAGATAKAEG--LYLVDVDYPLEW 247

>ISPD_GEOSL (Q746Z9) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase|
           (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol
           synthase) (MEP cytidylyltransferase) (MCT)
          Length = 232

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 231 YGVRSSRGAVATGGQRSEARLNG-RAREG 148
           YG    RG VA G +R  + LNG RA EG
Sbjct: 69  YGFTKVRGIVAGGAERQHSVLNGLRAMEG 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,236,252
Number of Sequences: 219361
Number of extensions: 578716
Number of successful extensions: 1308
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)