>ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arabidopsis|
           thaliana envelope membrane integrase) (Ath4)
           (ALBINO3-like protein 1)
          Length = 1013

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 257 DILLDCGATGKGNDTDGRQWDGD 325
           DI +DCG++    D D R W GD
Sbjct: 28  DISIDCGSSSSHIDADNRTWVGD 50

>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic|
           serine protease) (Membrane-type mosaic serine protease)
          Length = 543

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 11  SSATRCPPLLSPARKSAPRSAPGEPFHGRSVSRDETQATA 130
           S A   PP  SPAR S  R+ P     GRS S      T+
Sbjct: 51  SPARAPPPQASPARASPARAPPSRSSSGRSSSARSASTTS 90

>MCF2L_RAT (Q63406) Guanine nucleotide exchange factor DBS (DBL's big sister)|
            (MCF2 transforming sequence-like protein) (OST oncogene)
            (Fragment)
          Length = 937

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = -3

Query: 138  PLMAVACVSSRLTDRP*NGSPGADLGADLRAGERSGGQRVAEEV 7
            PL    CVSS L   P  G   +     L A E  GG   AEE+
Sbjct: 870  PLCLEGCVSSSLPKPPEKGKGWSKTSHSLEAPEEDGGWSSAEEL 913

>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22|
          Length = 954

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 41  SPARKSAPRSAPGEPFHGRSVSRDET 118
           SP  +S PRS P      RS+SRD T
Sbjct: 817 SPGSRSRPRSRPRSRSRSRSLSRDRT 842

>CJ006_MOUSE (Q6P9P0) Protein C10orf6 homolog|
          Length = 1278

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 293 NDTDGRQWDGDAGSKYAPPNLASASAGAQDPSVP 394
           N++ G+   G   S+YAPP  +  +A    PSVP
Sbjct: 644 NESSGKNSGGSLHSEYAPPTASPPAALEVVPSVP 677

>SIF1_DROME (P91621) Protein still life, isoform SIF type 1|
          Length = 2072

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 147 LGGPLMAVACVSSRLTDRP*NGSPGADLGADLRAGERSGGQRVAEEV 7
           +G   +  A  S+ L D   +G PG + GAD    +  GGQ+  ++V
Sbjct: 229 VGSGKVVSAVSSTSLYDNVASGGPGTNQGADTLPRQMKGGQQDRQDV 275

>FOXD3_MOUSE (Q61060) Forkhead box protein D3 (HNF3/FH transcription factor|
           genesis) (Hepatocyte nuclear factor 3 forkhead homolog
           2) (HFH-2)
          Length = 465

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +2

Query: 260 ILLDCGATGKGNDTDGRQWDGDAGSKYA-----PPNLASASAGAQDPSVPQ 397
           + L   ATG GNDT   + DG  G + A      P   S + G   P+ P+
Sbjct: 76  LALPTEATGPGNDTGAPEADGCKGGEDAVTGGGGPGAGSGATGGLTPNKPK 126

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2161

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +2

Query: 20  TRCPPLLSPARKSAPRSAPGEPFHGRSVSRDETQA 124
           T  PP L P     P   P EP H   V    TQA
Sbjct: 527 TPTPPALPPTPTPTPEKDPEEPAHAPPVQSAPTQA 561

>ESR1_SPAAU (Q9PVZ9) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)|
          Length = 579

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 187 DKRRGGQEEQERASRGPSHGSSLRFVAAHRSPMKRLSRRRSGGG 56
           DKRR G  ++++AS+G  H +     A  +   K +S    GGG
Sbjct: 224 DKRRTGTSDRDKASKGLEHRT-----APPQDRRKHISSSAGGGG 262

>USP_MANSE (P54779) Protein ultraspiracle homolog|
          Length = 461

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -2

Query: 193 CGDKRRGGQEEQERASRG--PSHGSS 122
           CG KR   QEE++RA+RG   +H SS
Sbjct: 176 CGMKREAVQEERQRAARGTEDAHPSS 201

>H6ST3_HUMAN (Q8IZP7) Heparan-sulfate 6-O-sulfotransferase 3 (EC 2.8.2.-)|
           (HS6ST-3)
          Length = 471

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 190 GDKRRGGQEEQERAS--RGPSHGSSLRFVAAHRSPMKRLSR 74
           GD R G +EE+E       P +GS  RFV      +K L+R
Sbjct: 96  GDPREGEEEEEEDEPDPEAPENGSLPRFVPRFNFSLKDLTR 136

>CACB2_RABIT (P54288) Voltage-dependent L-type calcium channel beta-2 subunit|
           (CAB2) (Calcium channel, voltage-dependent, beta 2
           subunit)
          Length = 632

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
 Frame = +2

Query: 32  PLLSPARKSAPRSAPGEPFH------GRSVSRDET 118
           P L PA+KS  RS+   P H       R +SR ET
Sbjct: 492 PCLEPAKKSQHRSSSSAPHHNHRSGTSRGLSRQET 526


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,094,133
Number of Sequences: 219361
Number of extensions: 617042
Number of successful extensions: 2673
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2673
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)