ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl22f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191406.1| Oryza sativa (japonica cultivar-group), predic... 127 3e-26
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
3dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
4dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
5dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 66 9e-08
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 66 9e-08
8gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 66 9e-08
9dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 9e-08
10gb|AF295721.1| Uncultured bacterium clone SR7 LigH-like protein ... 42 1.3
11gb|AF295720.1| Uncultured bacterium clone SR9 LigH-like protein ... 42 1.3
12gb|AF295717.1| Uncultured bacterium clone SR4 LigH-like protein ... 42 1.3
13emb|AJ494805.1|UBA494805 Uncultured bacterium partial FTHFS gene... 42 1.3
14emb|AJ494781.1|UBA494781 Uncultured bacterium partial FTHFS gene... 42 1.3
15emb|AJ494780.1|UBA494780 Uncultured bacterium partial FTHFS gene... 42 1.3
16emb|AJ494778.1|UBA494778 Uncultured bacterium partial FTHFS gene... 42 1.3
17emb|AJ494777.1|UBA494777 Uncultured bacterium partial FTHFS gene... 42 1.3
18emb|AJ494770.1|UBA494770 Uncultured bacterium partial FTHFS gene... 42 1.3
19emb|AJ494769.1|UBA494769 Uncultured bacterium partial FTHFS gene... 42 1.3
20emb|AJ494765.1|UBA494765 Uncultured bacterium partial FTHFS gene... 42 1.3
21emb|AJ494763.1|UBA494763 Uncultured bacterium partial FTHFS gene... 42 1.3
22emb|AJ494762.1|UBA494762 Uncultured bacterium partial FTHFS gene... 42 1.3
23emb|AJ494761.1|UBA494761 Uncultured bacterium partial FTHFS gene... 42 1.3
24dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.3
25gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.3
26ref|XM_529516.1| PREDICTED: Pan troglodytes LOC452192 (LOC452192... 40 5.3
27gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.3
28gb|AC079316.15| Homo sapiens 12 BAC RP11-43D4 (Roswell Park Canc... 40 5.3
29gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 5.3
30emb|CR860958.1| Pongo pygmaeus mRNA; cDNA DKFZp470I2433 (from cl... 40 5.3
31ref|NM_136485.2| Drosophila melanogaster CG30377-RA (CG30377), mRNA 40 5.3
32gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.3
33gb|AC007084.7|AC007084 Drosophila melanogaster, chromosome 2R, r... 40 5.3
34gb|AE003839.4| Drosophila melanogaster chromosome 2R, section 11... 40 5.3
35gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 5.3
36gb|AF055913.1|AF055913 Crithidia fasciculata tryparedoxin (TryX)... 40 5.3
37dbj|AB042326.1| Homo sapiens C4ST mRNA for chondroitin 4-sulfotr... 40 5.3 
>ref|NM_191406.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2691

 Score =  127 bits (64), Expect = 3e-26
 Identities = 124/144 (86%)
 Strand = Plus / Plus

                                                                       
Query: 255 acgacatcctgctcgactgcggcgccacggggaaggggaacgacacggacggccgccagt 314
           ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||   ||
Sbjct: 143 acgacatcctgctcgactgcggcgcgacggggaaggggaacgacacggacgggcgggtgt 202

                                                                       
Query: 315 gggacggcgacgcggggtccaagtacgcgcctccaaacctcgcctcggccagcgccgggg 374
           ||  ||| ||||| |||||||||||||||||  | | ||||| ||||||   ||||| ||
Sbjct: 203 ggagcggggacgccgggtccaagtacgcgccggcgagcctcggctcggcgtccgccgcgg 262

                                   
Query: 375 cgcaagacccctcggtgccgcagg 398
            ||| |||||||||||||||||||
Sbjct: 263 ggcaggacccctcggtgccgcagg 286
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  127 bits (64), Expect = 3e-26
 Identities = 124/144 (86%)
 Strand = Plus / Plus

                                                                            
Query: 255      acgacatcctgctcgactgcggcgccacggggaaggggaacgacacggacggccgccagt 314
                ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||   ||
Sbjct: 32455506 acgacatcctgctcgactgcggcgcgacggggaaggggaacgacacggacgggcgggtgt 32455565

                                                                            
Query: 315      gggacggcgacgcggggtccaagtacgcgcctccaaacctcgcctcggccagcgccgggg 374
                ||  ||| ||||| |||||||||||||||||  | | ||||| ||||||   ||||| ||
Sbjct: 32455566 ggagcggggacgccgggtccaagtacgcgccggcgagcctcggctcggcgtccgccgcgg 32455625

                                        
Query: 375      cgcaagacccctcggtgccgcagg 398
                 ||| |||||||||||||||||||
Sbjct: 32455626 ggcaggacccctcggtgccgcagg 32455649
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>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score =  127 bits (64), Expect = 3e-26
 Identities = 124/144 (86%)
 Strand = Plus / Plus

                                                                         
Query: 255   acgacatcctgctcgactgcggcgccacggggaaggggaacgacacggacggccgccagt 314
             ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||   ||
Sbjct: 43027 acgacatcctgctcgactgcggcgcgacggggaaggggaacgacacggacgggcgggtgt 43086

                                                                         
Query: 315   gggacggcgacgcggggtccaagtacgcgcctccaaacctcgcctcggccagcgccgggg 374
             ||  ||| ||||| |||||||||||||||||  | | ||||| ||||||   ||||| ||
Sbjct: 43087 ggagcggggacgccgggtccaagtacgcgccggcgagcctcggctcggcgtccgccgcgg 43146

                                     
Query: 375   cgcaagacccctcggtgccgcagg 398
              ||| |||||||||||||||||||
Sbjct: 43147 ggcaggacccctcggtgccgcagg 43170
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>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1143G03
          Length = 137770

 Score =  127 bits (64), Expect = 3e-26
 Identities = 124/144 (86%)
 Strand = Plus / Plus

                                                                          
Query: 255    acgacatcctgctcgactgcggcgccacggggaaggggaacgacacggacggccgccagt 314
              ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||   ||
Sbjct: 135003 acgacatcctgctcgactgcggcgcgacggggaaggggaacgacacggacgggcgggtgt 135062

                                                                          
Query: 315    gggacggcgacgcggggtccaagtacgcgcctccaaacctcgcctcggccagcgccgggg 374
              ||  ||| ||||| |||||||||||||||||  | | ||||| ||||||   ||||| ||
Sbjct: 135063 ggagcggggacgccgggtccaagtacgcgccggcgagcctcggctcggcgtccgccgcgg 135122

                                      
Query: 375    cgcaagacccctcggtgccgcagg 398
               ||| |||||||||||||||||||
Sbjct: 135123 ggcaggacccctcggtgccgcagg 135146
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>dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064M23, full
           insert sequence
          Length = 3155

 Score =  127 bits (64), Expect = 3e-26
 Identities = 124/144 (86%)
 Strand = Plus / Plus

                                                                       
Query: 255 acgacatcctgctcgactgcggcgccacggggaaggggaacgacacggacggccgccagt 314
           ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||   ||
Sbjct: 373 acgacatcctgctcgactgcggcgcgacggggaaggggaacgacacggacgggcgggtgt 432

                                                                       
Query: 315 gggacggcgacgcggggtccaagtacgcgcctccaaacctcgcctcggccagcgccgggg 374
           ||  ||| ||||| |||||||||||||||||  | | ||||| ||||||   ||||| ||
Sbjct: 433 ggagcggggacgccgggtccaagtacgcgccggcgagcctcggctcggcgtccgccgcgg 492

                                   
Query: 375 cgcaagacccctcggtgccgcagg 398
            ||| |||||||||||||||||||
Sbjct: 493 ggcaggacccctcggtgccgcagg 516
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                                 
Query: 258      acatcctgctcgactgcggcgccacggggaaggggaacgacacggacgg 306
                |||||||||||||||||||||| |||||| |||  ||||||||||||||
Sbjct: 12282140 acatcctgctcgactgcggcgcgacggggcaggccaacgacacggacgg 12282188



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 90       atgggcgatctgtgagccgcg 110
                |||||||||||||||||||||
Sbjct: 12281945 atgggcgatctgtgagccgcg 12281965
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                                 
Query: 258      acatcctgctcgactgcggcgccacggggaaggggaacgacacggacgg 306
                |||||||||||||||||||||| |||||| |||  ||||||||||||||
Sbjct: 12278903 acatcctgctcgactgcggcgcgacggggcaggccaacgacacggacgg 12278951



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 90       atgggcgatctgtgagccgcg 110
                |||||||||||||||||||||
Sbjct: 12278708 atgggcgatctgtgagccgcg 12278728
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>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                              
Query: 258   acatcctgctcgactgcggcgccacggggaaggggaacgacacggacgg 306
             |||||||||||||||||||||| |||||| |||  ||||||||||||||
Sbjct: 51673 acatcctgctcgactgcggcgcgacggggcaggccaacgacacggacgg 51721



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    atgggcgatctgtgagccgcg 110
             |||||||||||||||||||||
Sbjct: 51478 atgggcgatctgtgagccgcg 51498
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>dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097C16, full
           insert sequence
          Length = 3171

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                            
Query: 258 acatcctgctcgactgcggcgccacggggaaggggaacgacacggacgg 306
           |||||||||||||||||||||| |||||| |||  ||||||||||||||
Sbjct: 379 acatcctgctcgactgcggcgcgacggggcaggccaacgacacggacgg 427



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 90  atgggcgatctgtgagccgcg 110
           |||||||||||||||||||||
Sbjct: 184 atgggcgatctgtgagccgcg 204
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>gb|AF295721.1| Uncultured bacterium clone SR7 LigH-like protein gene, partial cds
          Length = 1053

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tccgcccccagatcggcgccg 76
           |||||||||||||||||||||
Sbjct: 524 tccgcccccagatcggcgccg 504
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>gb|AF295720.1| Uncultured bacterium clone SR9 LigH-like protein gene, partial cds
          Length = 1050

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tccgcccccagatcggcgccg 76
           |||||||||||||||||||||
Sbjct: 521 tccgcccccagatcggcgccg 501
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>gb|AF295717.1| Uncultured bacterium clone SR4 LigH-like protein gene, partial cds
          Length = 1056

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tccgcccccagatcggcgccg 76
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494805.1|UBA494805 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone SS3
          Length = 1059

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tccgcccccagatcggcgccg 76
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494781.1|UBA494781 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI55G
          Length = 1056

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tccgcccccagatcggcgccg 76
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494780.1|UBA494780 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI53G
          Length = 1056

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tccgcccccagatcggcgccg 76
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494778.1|UBA494778 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI51G
          Length = 1056

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tccgcccccagatcggcgccg 76
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494777.1|UBA494777 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI50G
          Length = 1056

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tccgcccccagatcggcgccg 76
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494770.1|UBA494770 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI25G
          Length = 1056

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tccgcccccagatcggcgccg 76
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494769.1|UBA494769 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI22G
          Length = 1056

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tccgcccccagatcggcgccg 76
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494765.1|UBA494765 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI10G
          Length = 1056

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tccgcccccagatcggcgccg 76
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494763.1|UBA494763 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI5G
          Length = 1056

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tccgcccccagatcggcgccg 76
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494762.1|UBA494762 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI4G
          Length = 1056

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tccgcccccagatcggcgccg 76
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>emb|AJ494761.1|UBA494761 Uncultured bacterium partial FTHFS gene for formyltetrahydrofolate
           synthetase clone JI2G
          Length = 1056

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 56  tccgcccccagatcggcgccg 76
           |||||||||||||||||||||
Sbjct: 527 tccgcccccagatcggcgccg 507
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 278    gccacggggaaggggaacgac 298
              |||||||||||||||||||||
Sbjct: 273057 gccacggggaaggggaacgac 273037
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 278     gccacggggaaggggaacgac 298
               |||||||||||||||||||||
Sbjct: 1616384 gccacggggaaggggaacgac 1616404
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>ref|XM_529516.1| PREDICTED: Pan troglodytes LOC452192 (LOC452192), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 149 tgcgcgctcctgctcctcct 168
           ||||||||||||||||||||
Sbjct: 815 tgcgcgctcctgctcctcct 796
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 356     gcctcggccagcgccggggc 375
               ||||||||||||||||||||
Sbjct: 2265290 gcctcggccagcgccggggc 2265309
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>gb|AC079316.15| Homo sapiens 12 BAC RP11-43D4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178905

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    tgcgcgctcctgctcctcct 168
              ||||||||||||||||||||
Sbjct: 103194 tgcgcgctcctgctcctcct 103213
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 357     cctcggccagcgccggggcg 376
               ||||||||||||||||||||
Sbjct: 3598569 cctcggccagcgccggggcg 3598550
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>emb|CR860958.1| Pongo pygmaeus mRNA; cDNA DKFZp470I2433 (from clone DKFZp470I2433)
          Length = 1543

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 274 cggcgccacggggaaggggaacga 297
           |||||||||||| |||||||||||
Sbjct: 405 cggcgccacgggaaaggggaacga 428
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>ref|NM_136485.2| Drosophila melanogaster CG30377-RA (CG30377), mRNA
          Length = 3144

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tcacctcctccgccacgcgc 25
           ||||||||||||||||||||
Sbjct: 812 tcacctcctccgccacgcgc 793
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 353     ctcgcctcggccagcgccgg 372
               ||||||||||||||||||||
Sbjct: 1174384 ctcgcctcggccagcgccgg 1174365
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>gb|AC007084.7|AC007084 Drosophila melanogaster, chromosome 2R, region 43F-44A, BAC clone
             BACR26A16, complete sequence
          Length = 139410

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     tcacctcctccgccacgcgc 25
             ||||||||||||||||||||
Sbjct: 74871 tcacctcctccgccacgcgc 74890
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>gb|AE003839.4| Drosophila melanogaster chromosome 2R, section 11 of 73 of the complete
              sequence
          Length = 254177

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      tcacctcctccgccacgcgc 25
              ||||||||||||||||||||
Sbjct: 117317 tcacctcctccgccacgcgc 117298
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 15      ccgccacgcgctgcccgccg 34
               ||||||||||||||||||||
Sbjct: 1061044 ccgccacgcgctgcccgccg 1061025
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>gb|AF055913.1|AF055913 Crithidia fasciculata tryparedoxin (TryX) gene, complete cds
          Length = 1292

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 10  ctcctccgccacgcgctgcc 29
           ||||||||||||||||||||
Sbjct: 296 ctcctccgccacgcgctgcc 315
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>dbj|AB042326.1| Homo sapiens C4ST mRNA for chondroitin 4-sulfotranseferase,
           complete cds
          Length = 1554

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 149 tgcgcgctcctgctcctcct 168
           ||||||||||||||||||||
Sbjct: 156 tgcgcgctcctgctcctcct 137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,620,552
Number of Sequences: 3902068
Number of extensions: 1620552
Number of successful extensions: 44418
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43969
Number of HSP's gapped (non-prelim): 444
length of query: 398
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 376
effective length of database: 17,147,199,772
effective search space: 6447347114272
effective search space used: 6447347114272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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