ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl22e11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_754482.1| Ustilago maydis 521 hypothetical protein (UM03428.1) partial mRNA Length = 2121 Score = 46.1 bits (23), Expect = 0.047 Identities = 23/23 (100%) Strand = Plus / Plus Query: 191 acgacgacaatgacgatgatgat 213 ||||||||||||||||||||||| Sbjct: 1052 acgacgacaatgacgatgatgat 1074
>gb|AC133489.32| Mus musculus strain C57BL/6J clone rp23-74a5, complete sequence Length = 225524 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 acgacgacaatgacgatgatgatacc 216 |||||||| ||||||||||||||||| Sbjct: 59858 acgacgacgatgacgatgatgatacc 59883
>gb|AC144460.31| Mus musculus strain C57BL/6J clone rp23-109m13, complete sequence Length = 212991 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 acgacgacaatgacgatgatgatacc 216 |||||||| ||||||||||||||||| Sbjct: 162545 acgacgacgatgacgatgatgatacc 162570
>gb|AC156951.7| Mus musculus 6 BAC RP24-339D12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 142364 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Minus Query: 191 acgacgacaatgacgatgatgatacc 216 |||||||| ||||||||||||||||| Sbjct: 141779 acgacgacgatgacgatgatgatacc 141754
>gb|AC155720.7| Mus musculus 6 BAC RP24-151P23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 210211 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Minus Query: 191 acgacgacaatgacgatgatgatacc 216 |||||||| ||||||||||||||||| Sbjct: 29753 acgacgacgatgacgatgatgatacc 29728
>ref|NM_197732.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0042H09.7), mRNA Length = 1781 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 gccgctgccgctgccgccttg 26 ||||||||||||||||||||| Sbjct: 118 gccgctgccgctgccgccttg 138
>gb|AY446894.1| Human herpesvirus 5 strain Merlin, complete genome Length = 235645 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcctt 25 ||||||||||||||||||||| Sbjct: 73673 cgccgctgccgctgccgcctt 73693
>gb|AY486473.1|AY486470S04 Human herpesvirus 5 strain Toledo genome, partial sequence Length = 29148 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcctt 25 ||||||||||||||||||||| Sbjct: 21307 cgccgctgccgctgccgcctt 21327
>gb|AC146999.1| Human Herpesvirus 5 AD169-BAC isolate, complete sequence Length = 233739 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcctt 25 ||||||||||||||||||||| Sbjct: 148537 cgccgctgccgctgccgcctt 148517
>gb|AC146907.1| Human Herpesvirus 5 FIX-BAC isolate, complete sequence Length = 229209 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcctt 25 ||||||||||||||||||||| Sbjct: 154507 cgccgctgccgctgccgcctt 154487
>gb|AC146905.1| Human Herpesvirus 5 Toledo-BAC isolate, complete sequence Length = 226889 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcctt 25 ||||||||||||||||||||| Sbjct: 149931 cgccgctgccgctgccgcctt 149911
>gb|AC146904.1| Human Herpesvirus 5 PH-BAC isolate, complete sequence Length = 229700 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcctt 25 ||||||||||||||||||||| Sbjct: 154602 cgccgctgccgctgccgcctt 154582
>gb|AC146851.1| Human Herpesvirus 5 Towne-BAC isolate, complete sequence Length = 229483 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcctt 25 ||||||||||||||||||||| Sbjct: 105184 cgccgctgccgctgccgcctt 105204
>gb|AY315197.1| Human herpesvirus 5 strain Towne, complete genome Length = 231236 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcctt 25 ||||||||||||||||||||| Sbjct: 71880 cgccgctgccgctgccgcctt 71900
>emb|CR702708.2|CNS0G55S Tetraodon nigroviridis full-length cDNA Length = 1220 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 193 gacgacaatgacgatgatgat 213 ||||||||||||||||||||| Sbjct: 551 gacgacaatgacgatgatgat 531
>emb|X17403.1|HEHCMVCG Human cytomegalovirus strain AD169 complete genome Length = 229354 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcctt 25 ||||||||||||||||||||| Sbjct: 72384 cgccgctgccgctgccgcctt 72404
>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete sequence Length = 144191 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 gccgctgccgctgccgccttg 26 ||||||||||||||||||||| Sbjct: 86387 gccgctgccgctgccgccttg 86407
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcctt 25 ||||||||||||||||||||| Sbjct: 6656721 cgccgctgccgctgccgcctt 6656701 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 22895550 cgccgctgccgctgccgcct 22895569
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 gccgctgccgctgccgccttg 26 ||||||||||||||||||||| Sbjct: 21523670 gccgctgccgctgccgccttg 21523650 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 15010466 cgccgctgccgctgccgcct 15010485 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 8018130 cgccgctgccgctgccgcct 8018149
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 acgccgctgccgctgccgcct 24 ||||||||||||||||||||| Sbjct: 28596448 acgccgctgccgctgccgcct 28596468
>gb|AC171141.2| Helobdella robusta clone CH306-1B3, complete sequence Length = 94001 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 acgacgacaatgacgatgatg 211 ||||||||||||||||||||| Sbjct: 74423 acgacgacaatgacgatgatg 74443
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C09 Length = 170226 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 acgccgctgccgctgccgcct 24 ||||||||||||||||||||| Sbjct: 122887 acgccgctgccgctgccgcct 122907
>dbj|AK105615.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B10, full insert sequence Length = 2184 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 gccgctgccgctgccgccttg 26 ||||||||||||||||||||| Sbjct: 290 gccgctgccgctgccgccttg 310
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 gccgctgccgctgccgccttg 26 ||||||||||||||||||||| Sbjct: 21535333 gccgctgccgctgccgccttg 21535313 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 15018707 cgccgctgccgctgccgcct 15018726 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 8023229 cgccgctgccgctgccgcct 8023248
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcctt 25 ||||||||||||||||||||| Sbjct: 6656596 cgccgctgccgctgccgcctt 6656576 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 22823741 cgccgctgccgctgccgcct 22823760
>emb|AL713939.6|CNS07YPL Oryza sativa chromosome 12, . BAC OJ1722_D03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 171861 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcctt 25 ||||||||||||||||||||| Sbjct: 74726 cgccgctgccgctgccgcctt 74706
>gb|M17209.1|HS5VF Human cytomegalovirus F fragment DNA encoding DNA polymerase and glycoprotein B, complete cds Length = 20349 Score = 42.1 bits (21), Expect = 0.74 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcctt 25 ||||||||||||||||||||| Sbjct: 7864 cgccgctgccgctgccgcctt 7884
>gb|BC109300.1| Homo sapiens Sp4 transcription factor, mRNA (cDNA clone MGC:130008 IMAGE:40034749), complete cds Length = 2628 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 175 cgccgctgccgctgccgcct 156
>gb|AC154516.2| Mus musculus BAC clone RP24-83D23 from chromosome 14, complete sequence Length = 216566 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 acgacaatgacgatgatgat 213 |||||||||||||||||||| Sbjct: 96552 acgacaatgacgatgatgat 96533
>ref|XM_527679.1| PREDICTED: Pan troglodytes similar to Sp4 transcription factor (LOC472304), mRNA Length = 2355 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 51 cgccgctgccgctgccgcct 32
>ref|XM_450721.1| Oryza sativa (japonica cultivar-group), mRNA Length = 685 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 cgacgaggtgcggctgaatt 126 |||||||||||||||||||| Sbjct: 53 cgacgaggtgcggctgaatt 72
>ref|NM_196653.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0012D19.14), mRNA Length = 1452 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 1111 cgccgctgccgctgccgcct 1092
>ref|NM_195617.1| Oryza sativa (japonica cultivar-group) putative cytochrome 450 (OSJNBb0079E01.10), mRNA Length = 1608 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 110 cgccgctgccgctgccgcct 129
>ref|NM_003112.3| Homo sapiens Sp4 transcription factor (SP4), mRNA Length = 5811 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 232 cgccgctgccgctgccgcct 213
>ref|XM_468728.1| Oryza sativa (japonica cultivar-group), mRNA Length = 720 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 acgccgctgccgctgccgcc 23 |||||||||||||||||||| Sbjct: 521 acgccgctgccgctgccgcc 502
>gb|BT016733.1| Zea mays clone Contig566 mRNA sequence Length = 1342 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 cgacgacaatgacgatgatg 211 |||||||||||||||||||| Sbjct: 62 cgacgacaatgacgatgatg 81
>gb|AY017951.1| Oryza sativa microsatellite MRG0276 containing (AG)X17, genomic sequence Length = 234 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 30 cgccgctgccgctgccgcct 11
>gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0012D19, complete sequence Length = 153276 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 69085 cgccgctgccgctgccgcct 69104
>gb|AC151486.1| Pan troglodytes chromosome X clone PTB-029D14 map human ortholog q28, complete sequence Length = 154019 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 118000 cgccgctgccgctgccgcct 118019
>gb|AC135569.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018F17, complete sequence Length = 104291 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ccgacgccgctgccgctgcc 20 |||||||||||||||||||| Sbjct: 69041 ccgacgccgctgccgctgcc 69060
>gb|AC145120.1| Solanum demissum chromosome 5 BAC PGEC446O19 genomic sequence, complete sequence Length = 122450 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cgacaatgacgatgatgata 214 |||||||||||||||||||| Sbjct: 103505 cgacaatgacgatgatgata 103524
>gb|AF116519.1|AF116519S1 Mus musculus periplakin (ppl) gene, exon 1 Length = 3058 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 1690 cgccgctgccgctgccgcct 1709
>gb|AC148650.1| Pan troglodytes chromosome X clone PTB-044F10 map human ortholog q28, complete sequence Length = 153826 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 11442 cgccgctgccgctgccgcct 11461
>gb|AC129219.3| Mus musculus BAC clone RP24-474C15 from chromosome 14, complete sequence Length = 195935 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 acgacaatgacgatgatgat 213 |||||||||||||||||||| Sbjct: 174232 acgacaatgacgatgatgat 174213
>gb|AC145984.3| Pan troglodytes BAC clone RP43-17F10 from 7, complete sequence Length = 186825 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 15410 cgccgctgccgctgccgcct 15429
>gb|BC031652.1| Mus musculus SUMO/sentrin specific peptidase 2, mRNA (cDNA clone MGC:35618 IMAGE:3483046), complete cds Length = 3109 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gccgctgccgctgccgcctt 25 |||||||||||||||||||| Sbjct: 32 gccgctgccgctgccgcctt 13
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 acgccgctgccgctgccgcc 23 |||||||||||||||||||| Sbjct: 17274067 acgccgctgccgctgccgcc 17274048
>gb|AC004595.1| Homo sapiens BAC clone CTB-23M10 from 7, complete sequence Length = 136170 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 19387 cgccgctgccgctgccgcct 19368
>ref|XM_753911.1| Ustilago maydis 521 hypothetical protein (UM02857.1) partial mRNA Length = 4290 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gacgccgctgccgctgccgc 22 |||||||||||||||||||| Sbjct: 163 gacgccgctgccgctgccgc 182
>gb|AC124576.4| Mus musculus BAC clone RP23-162H6 from chromosome 16, complete sequence Length = 233527 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 168543 cgccgctgccgctgccgcct 168562
>ref|XM_845630.1| PREDICTED: Canis familiaris similar to RNA-binding protein 9 (RNA binding motif protein 9) (Hexaribonucleotide binding protein 2) (Repressor of tamoxifen transcriptional activity), transcript variant 3 (LOC481281), mRNA Length = 1653 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 1109 cgccgctgccgctgccgcct 1128
>ref|XM_857049.1| PREDICTED: Canis familiaris similar to RNA-binding protein 9 (RNA binding motif protein 9) (Hexaribonucleotide binding protein 2) (Repressor of tamoxifen transcriptional activity), transcript variant 9 (LOC481281), mRNA Length = 1974 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 1430 cgccgctgccgctgccgcct 1449
>ref|XM_857022.1| PREDICTED: Canis familiaris similar to RNA-binding protein 9 (RNA binding motif protein 9) (Hexaribonucleotide binding protein 2) (Repressor of tamoxifen transcriptional activity), transcript variant 8 (LOC481281), mRNA Length = 1656 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 1112 cgccgctgccgctgccgcct 1131
>ref|XM_538402.2| PREDICTED: Canis familiaris similar to RNA-binding protein 9 (RNA binding motif protein 9) (Hexaribonucleotide binding protein 2) (Repressor of tamoxifen transcriptional activity), transcript variant 1 (LOC481281), mRNA Length = 1511 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 1069 cgccgctgccgctgccgcct 1088
>ref|XM_856962.1| PREDICTED: Canis familiaris similar to RNA-binding protein 9 (RNA binding motif protein 9) (Hexaribonucleotide binding protein 2) (Repressor of tamoxifen transcriptional activity), transcript variant 7 (LOC481281), mRNA Length = 1583 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 1141 cgccgctgccgctgccgcct 1160
>ref|XM_856936.1| PREDICTED: Canis familiaris similar to RNA-binding protein 9 (RNA binding motif protein 9) (Hexaribonucleotide binding protein 2) (Repressor of tamoxifen transcriptional activity), transcript variant 6 (LOC481281), mRNA Length = 671 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 229 cgccgctgccgctgccgcct 248
>ref|XM_856903.1| PREDICTED: Canis familiaris similar to RNA-binding protein 9 (RNA binding motif protein 9) (Hexaribonucleotide binding protein 2) (Repressor of tamoxifen transcriptional activity), transcript variant 5 (LOC481281), mRNA Length = 1553 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 1447 cgccgctgccgctgccgcct 1466
>ref|XM_856874.1| PREDICTED: Canis familiaris similar to RNA-binding protein 9 (RNA binding motif protein 9) (Hexaribonucleotide binding protein 2) (Repressor of tamoxifen transcriptional activity), transcript variant 4 (LOC481281), mRNA Length = 2031 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 1487 cgccgctgccgctgccgcct 1506
>gb|U52111.3| Homo sapiens chromosome X clone Qc-7G6, QLL-F1720, QLL-C1335, Qc-8B7, Qc-11H12, Qc-7F6, QLL-E153, Qc-10E8, Qc-10B7 map q28, complete sequence Length = 247592 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 213878 cgccgctgccgctgccgcct 213897
>gb|AC127246.3| Mus musculus BAC clone RP24-424L20 from chromosome 16, complete sequence Length = 181475 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 133984 cgccgctgccgctgccgcct 133965
>gb|AC145386.1| Oryza sativa chromosome 3 BAC OSJNBb0028K20 genomic sequence, complete sequence Length = 115326 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 acgccgctgccgctgccgcc 23 |||||||||||||||||||| Sbjct: 106811 acgccgctgccgctgccgcc 106792
>emb|X68561.1|HSSPR1 H.sapiens SPR-1 mRNA for GT box binding protein Length = 2986 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 232 cgccgctgccgctgccgcct 213
>emb|AL356475.11| Human DNA sequence from clone RP11-332H17 on chromosome 1 Contains the 5' end of the KIFAP3 gene for kinesin-associated protein 3 and a novel gene, complete sequence Length = 108047 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 acgccgctgccgctgccgcc 23 |||||||||||||||||||| Sbjct: 67887 acgccgctgccgctgccgcc 67868
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gacgccgctgccgctgccgc 22 |||||||||||||||||||| Sbjct: 7100 gacgccgctgccgctgccgc 7119
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 acgccgctgccgctgccgcc 23 |||||||||||||||||||| Sbjct: 2794752 acgccgctgccgctgccgcc 2794733
>emb|AL121753.30|HSDJ614O4 Human DNA sequence from clone RP4-614O4 on chromosome 20q11.1-12 Contains the C20orf127 locus for a metallothionein protein pseudogene, the MMP24 gene for matrix metalloproteinase 24 (membrane-inserted), a novel gene, the ITGB4BP gene for integrin beta 4 binding protein, the C20orf120 gene for chromosome 20 open reading frame 120, the C20orf128 gene for chromosome 20 open reading frame 128, the 3' end of the C20orf44 gene for chromosome 20 open reading frame 44 and three CpG islands, complete sequence Length = 150481 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 acgacgacaatgacgatgatgata 214 ||||||||||||| |||||||||| Sbjct: 95375 acgacgacaatgatgatgatgata 95398
>ref|NM_014970.2| Homo sapiens kinesin-associated protein 3 (KIFAP3), mRNA Length = 2997 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 acgccgctgccgctgccgcc 23 |||||||||||||||||||| Sbjct: 252 acgccgctgccgctgccgcc 271
>gb|BC048012.1| Homo sapiens kinesin-associated protein 3, mRNA (cDNA clone IMAGE:5301903) Length = 2917 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 acgccgctgccgctgccgcc 23 |||||||||||||||||||| Sbjct: 296 acgccgctgccgctgccgcc 315
>gb|BC028679.2| Homo sapiens kinesin-associated protein 3, mRNA (cDNA clone MGC:26126 IMAGE:4829354), complete cds Length = 2968 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 acgccgctgccgctgccgcc 23 |||||||||||||||||||| Sbjct: 209 acgccgctgccgctgccgcc 228
>emb|CR859569.1| Pongo pygmaeus mRNA; cDNA DKFZp459D094 (from clone DKFZp459D094) Length = 3032 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 acgccgctgccgctgccgcc 23 |||||||||||||||||||| Sbjct: 206 acgccgctgccgctgccgcc 225
>emb|CR860397.1| Pongo pygmaeus mRNA; cDNA DKFZp459J041 (from clone DKFZp459J041) Length = 2974 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 acgccgctgccgctgccgcc 23 |||||||||||||||||||| Sbjct: 142 acgccgctgccgctgccgcc 161
>emb|CR857413.1| Pongo pygmaeus mRNA; cDNA DKFZp469M0517 (from clone DKFZp469M0517) Length = 4290 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 259 cgccgctgccgctgccgcct 240
>gb|AC026689.6| Homo sapiens chromosome 5 clone CTB-55A14, complete sequence Length = 215150 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 58925 cgccgctgccgctgccgcct 58906
>gb|AC119149.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0079E01, complete sequence Length = 132870 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 74573 cgccgctgccgctgccgcct 74554
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gacgccgctgccgctgccgc 22 |||||||||||||||||||| Sbjct: 7100 gacgccgctgccgctgccgc 7119
>ref|NM_178468.2| Homo sapiens family with sequence similarity 83, member C (FAM83C), mRNA Length = 3188 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 acgacgacaatgacgatgatgata 214 ||||||||||||| |||||||||| Sbjct: 2993 acgacgacaatgatgatgatgata 2970
>dbj|AK091138.1| Homo sapiens cDNA FLJ33819 fis, clone CTONG2003189 Length = 2532 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 acgacgacaatgacgatgatgata 214 ||||||||||||| |||||||||| Sbjct: 2336 acgacgacaatgatgatgatgata 2313
>dbj|AK091116.1| Homo sapiens cDNA FLJ33797 fis, clone CTONG2000034 Length = 2729 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 acgacgacaatgacgatgatgata 214 ||||||||||||| |||||||||| Sbjct: 2560 acgacgacaatgatgatgatgata 2537
>dbj|AB226043.1| Aspergillus oryzae cDNA, contig sequence: AoEST2899 Length = 1073 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 acgacgacaatgacgatgatgata 214 |||||||| ||||||||||||||| Sbjct: 323 acgacgacgatgacgatgatgata 346
>dbj|AB223422.1| Aspergillus oryzae cDNA, contig sequence: AoEST0254 Length = 1224 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 acgacgacaatgacgatgatgata 214 |||||||| ||||||||||||||| Sbjct: 185 acgacgacgatgacgatgatgata 208
>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 Length = 1841713 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 acgacgacaatgacgatgatgata 214 |||||||| ||||||||||||||| Sbjct: 221951 acgacgacgatgacgatgatgata 221928
>gb|AC002505.3| Arabidopsis thaliana chromosome 2 clone T9J22 map B68, complete sequence Length = 115851 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 114674 cgccgctgccgctgccgcct 114693
>dbj|AK142562.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630036F24 product:periplakin, full insert sequence Length = 922 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 16 cgccgctgccgctgccgcct 35
>gb|AF368904.1|AF368904 Mus musculus SUMO-1/Smt3-specific isopeptidase 2 (Smt3ip2) mRNA, complete cds Length = 2142 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gccgctgccgctgccgcctt 25 |||||||||||||||||||| Sbjct: 36 gccgctgccgctgccgcctt 17
>dbj|AK015987.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930538C18 product:AXIN-ASSOCIATING MOLECULE homolog [Rattus norvegicus], full insert sequence Length = 2156 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gccgctgccgctgccgcctt 25 |||||||||||||||||||| Sbjct: 36 gccgctgccgctgccgcctt 17
>dbj|AK031030.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5832409A09 product:AXIN-ASSOCIATING MOLECULE homolog [Rattus norvegicus], full insert sequence Length = 2989 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gccgctgccgctgccgcctt 25 |||||||||||||||||||| Sbjct: 42 gccgctgccgctgccgcctt 23
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ccgacgccgctgccgctgcc 20 |||||||||||||||||||| Sbjct: 17095090 ccgacgccgctgccgctgcc 17095109
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 24190840 cgccgctgccgctgccgcct 24190859
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 acgccgctgccgctgccgcc 23 |||||||||||||||||||| Sbjct: 17267608 acgccgctgccgctgccgcc 17267589
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 ccgctgccgctgccgccttg 26 |||||||||||||||||||| Sbjct: 2654326 ccgctgccgctgccgccttg 2654345
>gb|AC163761.3| Pan troglodytes BAC clone CH251-214O19 from chromosome unknown, complete sequence Length = 193316 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 acgacgacaatgacgatgatgata 214 ||||||||||||| |||||||||| Sbjct: 71460 acgacgacaatgatgatgatgata 71483
>ref|NM_029457.2| Mus musculus SUMO/sentrin specific peptidase 2 (Senp2), mRNA Length = 3109 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gccgctgccgctgccgcctt 25 |||||||||||||||||||| Sbjct: 32 gccgctgccgctgccgcctt 13
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ctccgcgcccgccggccgacgcgc 98 |||||||||||||||||| ||||| Sbjct: 239665 ctccgcgcccgccggccgccgcgc 239688
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome Length = 4202352 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gacgacaatgacgatgatga 212 |||||||||||||||||||| Sbjct: 1778026 gacgacaatgacgatgatga 1778007
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 gacgccgctgccgctgccgc 22 |||||||||||||||||||| Sbjct: 1242860 gacgccgctgccgctgccgc 1242841
>dbj|AP004781.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0691E09 Length = 149859 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 20929 cgccgctgccgctgccgcct 20948
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 124298 cgccgctgccgctgccgcct 124317
>dbj|AK026471.1| Homo sapiens cDNA: FLJ22818 fis, clone KAIA3839, highly similar to HSU59919 Human Smg GDS-associated protein SMAP mRNA Length = 2788 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 acgccgctgccgctgccgcc 23 |||||||||||||||||||| Sbjct: 31 acgccgctgccgctgccgcc 50
>ref|XM_308431.2| Anopheles gambiae str. PEST ENSANGP00000017919 (ENSANGG00000015430), partial mRNA Length = 594 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 acgacaatgacgatgatgat 213 |||||||||||||||||||| Sbjct: 350 acgacaatgacgatgatgat 369
>dbj|AK070442.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052E10, full insert sequence Length = 2013 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 230 cgccgctgccgctgccgcct 249
>dbj|AK070178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046O09, full insert sequence Length = 2200 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 98 cgccgctgccgctgccgcct 117
>emb|CR381630.12| Zebrafish DNA sequence from clone CH211-234G24 in linkage group 18, complete sequence Length = 152854 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 116132 cgccgctgccgctgccgcct 116113
>dbj|AK058870.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-E05, full insert sequence Length = 715 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 cgacgaggtgcggctgaatt 126 |||||||||||||||||||| Sbjct: 83 cgacgaggtgcggctgaatt 102
>gb|AY107996.1| Zea mays PCO146733 mRNA sequence Length = 1461 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 cgacgccgctgccgctgccg 21 |||||||||||||||||||| Sbjct: 163 cgacgccgctgccgctgccg 144
>emb|CT030725.15| Mouse DNA sequence from clone RP24-281O2 on chromosome 16, complete sequence Length = 115213 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gccgctgccgctgccgcctt 25 |||||||||||||||||||| Sbjct: 76494 gccgctgccgctgccgcctt 76475
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 21346 cgccgctgccgctgccgcct 21365
>gb|DQ229211.1| Phytophthora ramorum elicitin-like protein RAL5 gene, complete cds Length = 513 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 cgacgccgctgccgctgccg 21 |||||||||||||||||||| Sbjct: 385 cgacgccgctgccgctgccg 366
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 ccgcgcccgccggccgacgcgccg 100 |||||| ||||||||||||||||| Sbjct: 599075 ccgcgcacgccggccgacgcgccg 599052
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 2.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 gccggccgacgcgccggacacgcg 108 |||||||| ||||||||||||||| Sbjct: 245808 gccggccggcgcgccggacacgcg 245831
>gb|U59919.1|HSU59919 Human Smg GDS-associated protein SMAP mRNA, complete cds Length = 2648 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 acgccgctgccgctgccgcc 23 |||||||||||||||||||| Sbjct: 169 acgccgctgccgctgccgcc 188
>gb|BC109301.1| Homo sapiens Sp4 transcription factor, mRNA (cDNA clone MGC:130009 IMAGE:40034751), complete cds Length = 2594 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 175 cgccgctgccgctgccgcct 156
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ccgacgccgctgccgctgcc 20 |||||||||||||||||||| Sbjct: 17189766 ccgacgccgctgccgctgcc 17189785
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 4827 cgccgctgccgctgccgcct 4846
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cgccgctgccgctgccgcct 24 |||||||||||||||||||| Sbjct: 61294 cgccgctgccgctgccgcct 61275
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gacgccgctgccgctgccgc 22 |||||||||||||||||||| Sbjct: 7117 gacgccgctgccgctgccgc 7136
>gb|AF026057.1|AF026057 Caenorhabditis briggsae NK-2 class homeodomain protein (ceh-24) gene, complete cds Length = 3381 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 gccgctgccgctgccgcctt 25 |||||||||||||||||||| Sbjct: 3019 gccgctgccgctgccgcctt 3038
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gacgccgctgccgctgccgc 22 |||||||||||||||||||| Sbjct: 7117 gacgccgctgccgctgccgc 7136
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gacgccgctgccgctgccgc 22 |||||||||||||||||||| Sbjct: 7875 gacgccgctgccgctgccgc 7894
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 2.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gacgccgctgccgctgccgc 22 |||||||||||||||||||| Sbjct: 7100 gacgccgctgccgctgccgc 7119 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,465,137 Number of Sequences: 3902068 Number of extensions: 1465137 Number of successful extensions: 50878 Number of sequences better than 10.0: 119 Number of HSP's better than 10.0 without gapping: 125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49437 Number of HSP's gapped (non-prelim): 1441 length of query: 229 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 207 effective length of database: 17,147,199,772 effective search space: 3549470352804 effective search space used: 3549470352804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
