ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl22e10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069532.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019G17, full insert sequence Length = 3340 Score = 97.6 bits (49), Expect = 3e-17 Identities = 121/145 (83%) Strand = Plus / Plus Query: 73 cccgccgccatgtcgacctgcgcctaccactcgccgcgcttctccgaggataatgcgtgg 132 ||||||||||||||| |||||| |||||||| ||||||||||||||||| | ||| | Sbjct: 72 cccgccgccatgtcggcctgcggttaccactccccgcgcttctccgaggacattgccttt 131 Query: 133 ctcccgcaatggcttcagccgcatcggcagccgacggccggcgagcaccgaacagacagc 192 ||||| |||||||| ||||||||||||| || | ||| ||||||||| | | |||||| Sbjct: 132 ctccctcaatggctacagccgcatcggccgctggcggttggcgagcacgggaaggacagc 191 Query: 193 gccggcgtgtcgccgccgccttgtg 217 |||| ||| ||| ||||| |||||| Sbjct: 192 gccgccgtttcgtcgccgtcttgtg 216 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 368 tgcctttctctctgcacctttcttcagaaagtgcagcacaactctcctcagttcaagcca 427 |||||||||||||||| ||||||||||||||| | || |||| |||||| |||||||| Sbjct: 367 tgcctttctctctgcatctttcttcagaaagtacttcaaaactatcctcaactcaagcca 426 Query: 428 atg 430 ||| Sbjct: 427 atg 429
>gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 genomic sequence, complete sequence Length = 166888 Score = 73.8 bits (37), Expect = 5e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 73 cccgccgccatgtcgacctgcgcctaccactcgccgcgcttctccgagg 121 ||||||||||||||| |||||| ||||||||| |||||||||||||||| Sbjct: 6522 cccgccgccatgtcggcctgcggctaccactccccgcgcttctccgagg 6474 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 368 tgcctttctctctgcacctttcttcagaaagtgcagcacaactctcctcagttcaagcca 427 |||||||||||||||| ||||||||||||||| | || |||| |||||| |||||||| Sbjct: 5438 tgcctttctctctgcatctttcttcagaaagtacttcaaaactatcctcaactcaagcca 5379 Query: 428 atg 430 ||| Sbjct: 5378 atg 5376 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 133 ctcccgcaatggcttcagccgcatcggcagccgacggccggcgagcaccgaacagacagc 192 ||||| |||||||| ||||||||||||| || | ||| ||||||||| | | |||||| Sbjct: 6280 ctccctcaatggctacagccgcatcggccgctggcggttggcgagcacgggaaggacagc 6221 Query: 193 gccggcgtgtcgccgccgccttgtg 217 |||| ||| ||| ||||| |||||| Sbjct: 6220 gccgccgtttcgtcgccgtcttgtg 6196
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 73.8 bits (37), Expect = 5e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 73 cccgccgccatgtcgacctgcgcctaccactcgccgcgcttctccgagg 121 ||||||||||||||| |||||| ||||||||| |||||||||||||||| Sbjct: 33658558 cccgccgccatgtcggcctgcggctaccactccccgcgcttctccgagg 33658606 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 368 tgcctttctctctgcacctttcttcagaaagtgcagcacaactctcctcagttcaagcca 427 |||||||||||||||| ||||||||||||||| | || |||| |||||| |||||||| Sbjct: 33659642 tgcctttctctctgcatctttcttcagaaagtacttcaaaactatcctcaactcaagcca 33659701 Query: 428 atg 430 ||| Sbjct: 33659702 atg 33659704 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Plus Query: 133 ctcccgcaatggcttcagccgcatcggcagccgacggccggcgagcaccgaacagacagc 192 ||||| |||||||| ||||||||||||| || | ||| ||||||||| | | |||||| Sbjct: 33658800 ctccctcaatggctacagccgcatcggccgctggcggttggcgagcacgggaaggacagc 33658859 Query: 193 gccggcgtgtcgccgccgccttgtg 217 |||| ||| ||| ||||| |||||| Sbjct: 33658860 gccgccgtttcgtcgccgtcttgtg 33658884
>gb|AC137507.3| Oryza sativa chromosome 3 BAC OSJNBb0033J23 genomic sequence, complete sequence Length = 126862 Score = 73.8 bits (37), Expect = 5e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 73 cccgccgccatgtcgacctgcgcctaccactcgccgcgcttctccgagg 121 ||||||||||||||| |||||| ||||||||| |||||||||||||||| Sbjct: 29927 cccgccgccatgtcggcctgcggctaccactccccgcgcttctccgagg 29975 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 368 tgcctttctctctgcacctttcttcagaaagtgcagcacaactctcctcagttcaagcca 427 |||||||||||||||| ||||||||||||||| | || |||| |||||| |||||||| Sbjct: 31011 tgcctttctctctgcatctttcttcagaaagtacttcaaaactatcctcaactcaagcca 31070 Query: 428 atg 430 ||| Sbjct: 31071 atg 31073 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Plus Query: 133 ctcccgcaatggcttcagccgcatcggcagccgacggccggcgagcaccgaacagacagc 192 ||||| |||||||| ||||||||||||| || | ||| ||||||||| | | |||||| Sbjct: 30169 ctccctcaatggctacagccgcatcggccgctggcggttggcgagcacgggaaggacagc 30228 Query: 193 gccggcgtgtcgccgccgccttgtg 217 |||| ||| ||| ||||| |||||| Sbjct: 30229 gccgccgtttcgtcgccgtcttgtg 30253
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 73.8 bits (37), Expect = 5e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 73 cccgccgccatgtcgacctgcgcctaccactcgccgcgcttctccgagg 121 ||||||||||||||| |||||| ||||||||| |||||||||||||||| Sbjct: 33749030 cccgccgccatgtcggcctgcggctaccactccccgcgcttctccgagg 33749078 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 368 tgcctttctctctgcacctttcttcagaaagtgcagcacaactctcctcagttcaagcca 427 |||||||||||||||| ||||||||||||||| | || |||| |||||| |||||||| Sbjct: 33750114 tgcctttctctctgcatctttcttcagaaagtacttcaaaactatcctcaactcaagcca 33750173 Query: 428 atg 430 ||| Sbjct: 33750174 atg 33750176 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Plus Query: 133 ctcccgcaatggcttcagccgcatcggcagccgacggccggcgagcaccgaacagacagc 192 ||||| |||||||| ||||||||||||| || | ||| ||||||||| | | |||||| Sbjct: 33749272 ctccctcaatggctacagccgcatcggccgctggcggttggcgagcacgggaaggacagc 33749331 Query: 193 gccggcgtgtcgccgccgccttgtg 217 |||| ||| ||| ||||| |||||| Sbjct: 33749332 gccgccgtttcgtcgccgtcttgtg 33749356
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 383 acctttcttcagaaagtgcagcacaa 408 ||||||||||||||| |||||||||| Sbjct: 4590382 acctttcttcagaaactgcagcacaa 4590357
>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1120_C08 Length = 150300 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 383 acctttcttcagaaagtgcagcacaa 408 ||||||||||||||| |||||||||| Sbjct: 114230 acctttcttcagaaactgcagcacaa 114205
>dbj|AP004590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577G06 Length = 58137 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 383 acctttcttcagaaagtgcagcacaa 408 ||||||||||||||| |||||||||| Sbjct: 4887 acctttcttcagaaactgcagcacaa 4862
>gb|AC156605.13| Mus musculus chromosome 7, clone RP23-305G5, complete sequence Length = 234816 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 366 tctgcctttctctctgcacct 386 ||||||||||||||||||||| Sbjct: 102006 tctgcctttctctctgcacct 101986
>ref|NM_023072.1| Homo sapiens zinc finger, SWIM-type containing 4 (ZSWIM4), mRNA Length = 4340 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctgcctttctctctgcacct 386 |||||||||||||||||||| Sbjct: 4026 ctgcctttctctctgcacct 4045
>gb|AC025353.9| Mus musculus chromosome 9, clone RP23-93E19, complete sequence Length = 274853 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ggcgcccaggccccgccgcc 81 |||||||||||||||||||| Sbjct: 28956 ggcgcccaggccccgccgcc 28975
>emb|CR956376.4| Pig DNA sequence from clone CH242-7P5 on chromosome 17, complete sequence Length = 152567 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ggcgcccaggccccgccgcc 81 |||||||||||||||||||| Sbjct: 52551 ggcgcccaggccccgccgcc 52570
>gb|AC126688.4| Mus musculus BAC clone RP23-152P20 from chromosome 7, complete sequence Length = 205673 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 358 agagaggttctgcctttctctctg 381 |||||||||||||||| ||||||| Sbjct: 205487 agagaggttctgccttcctctctg 205464
>gb|AC007528.5| Homo sapiens 12 BAC RP11-473N11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188451 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 ttcattctggaccctgcacaggag 252 |||||||||||||||| ||||||| Sbjct: 53658 ttcattctggaccctgaacaggag 53681
>gb|AC099609.8| Mus musculus chromosome 7, clone RP23-376D24, complete sequence Length = 226284 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 agagaggttctgcctttctctctg 381 |||||||||||||||| ||||||| Sbjct: 119337 agagaggttctgccttcctctctg 119360
>gb|AC110540.7| Mus musculus chromosome 3, clone RP23-105B8, complete sequence Length = 232416 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 tgtgttcattctggaccctgcaca 248 |||| ||||||||||||||||||| Sbjct: 17803 tgtggtcattctggaccctgcaca 17780
>gb|AC154993.9| Mus musculus chromosome 3, clone RP23-246L14, complete sequence Length = 208416 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 tgtgttcattctggaccctgcaca 248 |||| ||||||||||||||||||| Sbjct: 164087 tgtggtcattctggaccctgcaca 164064
>gb|AY368173.1| Homo sapiens microsomal glutathione S-transferase 1 (MGST1) gene, complete cds Length = 20634 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 ttcattctggaccctgcacaggag 252 |||||||||||||||| ||||||| Sbjct: 1335 ttcattctggaccctgaacaggag 1358
>emb|AL157897.8| Human DNA sequence from clone RP11-8D22 on chromosome 10, complete sequence Length = 173310 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 cagcacaactctcctcagtt 420 |||||||||||||||||||| Sbjct: 107977 cagcacaactctcctcagtt 107958
>gb|BC010976.1| Mus musculus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3 F, mRNA (cDNA clone MGC:13813 IMAGE:4219060), complete cds Length = 2499 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ggcgcccaggccccgccgcc 81 |||||||||||||||||||| Sbjct: 45 ggcgcccaggccccgccgcc 64
>emb|AL109619.1|ATT19F6 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project) Length = 77567 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 tgcctttctctctgcacctt 387 |||||||||||||||||||| Sbjct: 26034 tgcctttctctctgcacctt 26015
>emb|AL161560.2|ATCHRIV60 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 60 Length = 196677 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 tgcctttctctctgcacctt 387 |||||||||||||||||||| Sbjct: 161006 tgcctttctctctgcacctt 160987
>gb|AC009635.5| Homo sapiens chromosome 8, clone RP11-21J9, complete sequence Length = 171903 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 caagcaagccagatttggta 22 |||||||||||||||||||| Sbjct: 147147 caagcaagccagatttggta 147166
>emb|BX936327.3| Zebrafish DNA sequence from clone DKEY-21E10 in linkage group 3, complete sequence Length = 105845 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 tgcagcacaactctcctcag 418 |||||||||||||||||||| Sbjct: 61188 tgcagcacaactctcctcag 61207
>dbj|AK022283.1| Homo sapiens cDNA FLJ12221 fis, clone MAMMA1001091 Length = 2122 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctgcctttctctctgcacct 386 |||||||||||||||||||| Sbjct: 1809 ctgcctttctctctgcacct 1828
>gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequence Length = 505334 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 ttcagccgcatcggcagccg 165 |||||||||||||||||||| Sbjct: 173313 ttcagccgcatcggcagccg 173294
>gb|AC110775.3| Homo sapiens BAC clone RP11-290O12 from 4, complete sequence Length = 210300 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 tttgcatttgtcaggagatgagga 329 ||||||||||| |||||||||||| Sbjct: 123189 tttgcatttgtaaggagatgagga 123166
>dbj|AK140340.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430210F12 product:sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3 F, full insert sequence Length = 2974 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ggcgcccaggccccgccgcc 81 |||||||||||||||||||| Sbjct: 576 ggcgcccaggccccgccgcc 595
>gb|AC068863.6| Homo sapiens chromosome 2, clone CTD-2170C4, complete sequence Length = 101618 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 caagcaagccagatttggta 22 |||||||||||||||||||| Sbjct: 19383 caagcaagccagatttggta 19402
>gb|AF092926.1|AH006642S1 Homo sapiens microsomal glutathione transferase (MGST1) gene, exons 1 and 2, alternatively spliced products Length = 7769 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 ttcattctggaccctgcacaggag 252 |||||||||||||||| ||||||| Sbjct: 249 ttcattctggaccctgaacaggag 272
>gb|AC152718.6| Mus musculus BAC clone RP24-432B3 from chromosome 9, complete sequence Length = 174264 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ggcgcccaggccccgccgcc 81 |||||||||||||||||||| Sbjct: 118959 ggcgcccaggccccgccgcc 118978
>dbj|AK172610.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830219E14 product:sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3 F, full insert sequence Length = 3167 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 ggcgcccaggccccgccgcc 81 |||||||||||||||||||| Sbjct: 517 ggcgcccaggccccgccgcc 536
>gb|AC020916.8| Homo sapiens chromosome 19 clone CTD-3252C9, complete sequence Length = 214530 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctgcctttctctctgcacct 386 |||||||||||||||||||| Sbjct: 45058 ctgcctttctctctgcacct 45077
>gb|AC155912.7| Mus musculus 10 BAC RP24-536C12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 141692 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 tgtgtgttcattctggaccctgca 246 |||||||||||||||| ||||||| Sbjct: 31852 tgtgtgttcattctgggccctgca 31829
>gb|AC018796.4|AC018796 Homo sapiens chromosome 8, clone RP11-51K12, complete sequence Length = 148189 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 ctttctctctgcacctttct 390 |||||||||||||||||||| Sbjct: 37648 ctttctctctgcacctttct 37667
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tttcttcagaaagtgcagca 405 |||||||||||||||||||| Sbjct: 4215052 tttcttcagaaagtgcagca 4215033
>dbj|D82361.2| Homo sapiens MSSP-2 gene for c-myc single-strand binding protein, partial cds Length = 14148 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ggcggcgcccaggccccgcc 78 |||||||||||||||||||| Sbjct: 1243 ggcggcgcccaggccccgcc 1262
>gb|AC131754.3| Homo sapiens BAC clone RP11-335E9 from 2, complete sequence Length = 112520 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 ggcggcgcccaggccccgcc 78 |||||||||||||||||||| Sbjct: 60412 ggcggcgcccaggccccgcc 60393
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 gccgccatgtcgacctgcgc 95 |||||||||||||||||||| Sbjct: 3945573 gccgccatgtcgacctgcgc 3945554
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 gcgccggcgtgtcgccgccg 210 |||||||||||||||||||| Sbjct: 4169952 gcgccggcgtgtcgccgccg 4169971
>dbj|AK024452.1| Homo sapiens mRNA for FLJ00044 protein, partial cds Length = 4340 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctgcctttctctctgcacct 386 |||||||||||||||||||| Sbjct: 4026 ctgcctttctctctgcacct 4045
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 atggcttcagccgcatcggc 160 |||||||||||||||||||| Sbjct: 4484401 atggcttcagccgcatcggc 4484420
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 ctcctggcggcgcccaggcc 73 |||||||||||||||||||| Sbjct: 2648810 ctcctggcggcgcccaggcc 2648791
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 ccgccgccatgtcgacctgcgcct 97 ||||||||| |||||||||||||| Sbjct: 3235679 ccgccgccaggtcgacctgcgcct 3235702
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ccccgccgccatgtcgacct 91 |||||||||||||||||||| Sbjct: 1416792 ccccgccgccatgtcgacct 1416773
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tttcttcagaaagtgcagca 405 |||||||||||||||||||| Sbjct: 4215039 tttcttcagaaagtgcagca 4215020
>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104999 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 tttcttcagaaagtgcagca 405 |||||||||||||||||||| Sbjct: 68731 tttcttcagaaagtgcagca 68750
>emb|AL731806.13| Mouse DNA sequence from clone RP23-329N12 on chromosome 9, complete sequence Length = 89170 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ggcgcccaggccccgccgcc 81 |||||||||||||||||||| Sbjct: 78466 ggcgcccaggccccgccgcc 78447
>gb|AC002343.1|ATAC002343 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence Length = 116156 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 tgcctttctctctgcacctt 387 |||||||||||||||||||| Sbjct: 51606 tgcctttctctctgcacctt 51625 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,812,952 Number of Sequences: 3902068 Number of extensions: 3812952 Number of successful extensions: 74005 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73389 Number of HSP's gapped (non-prelim): 616 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
