ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl22e03 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 67.8 bits (164), Expect = 1e-11 Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 9/90 (10%) Frame = +2 Query: 173 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 325 RG VK V SG +++ G + PPE+ I LS + A LARR V DEP+A+ Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80 Query: 326 ESREFLRKLCVGKEVTFRVDYTAPNIGREF 415 +REFLRK +GKEV F ++ P GRE+ Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREY 109 Score = 41.6 bits (96), Expect = 7e-04 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 328 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGKEVTFRVDYTAP 397 +REFLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 67.4 bits (163), Expect = 1e-11 Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 15/109 (13%) Frame = +2 Query: 134 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR 295 A A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 296 RGGV---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREF 415 R DEP+A+ +REFLRK +GKEV F ++ P GRE+ Sbjct: 62 RAAATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREY 109 Score = 40.8 bits (94), Expect = 0.001 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 328 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGKEVTFRVDYTAP 397 +REFLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 67.0 bits (162), Expect = 2e-11 Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 15/106 (14%) Frame = +2 Query: 143 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGG 304 A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 305 V---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREF 415 DEP+A+ +REFLRK +GKEV F ++ P GRE+ Sbjct: 64 ATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREY 108 Score = 41.2 bits (95), Expect = 0.001 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 10/83 (12%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 328 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 345 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 400 Query: 329 SREFLRKLCVGKEVTFRVDYTAP 397 +REFLRK +GK+V+ VDY P Sbjct: 401 AREFLRKKLIGKKVSVTVDYIRP 423
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 67.0 bits (162), Expect = 2e-11 Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 9/102 (8%) Frame = +2 Query: 137 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRG----- 301 + +S A RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68 Query: 302 ----GVDEPFAWESREFLRKLCVGKEVTFRVDYTAPNIGREF 415 DEP+A+++REF+RK +GKEV F V+ P GRE+ Sbjct: 69 DTKDTPDEPWAFQAREFMRKKVIGKEVCFTVENKTPQ-GREY 109 Score = 38.9 bits (89), Expect = 0.005 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 11/81 (13%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR-----------RGGVDEPFAW 325 KV V + D +++ K K+I LS + PRL R D P+ + Sbjct: 347 KVMQVVNADAIVV----KLNSGEYKTIHLSSIRPPRLEGEEKNKDKDKRFRPLYDIPYMF 402 Query: 326 ESREFLRKLCVGKEVTFRVDY 388 E+REFLRK +GK+V VDY Sbjct: 403 EAREFLRKKLIGKKVNVTVDY 423
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 65.9 bits (159), Expect = 4e-11 Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 9/90 (10%) Frame = +2 Query: 173 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 325 RG +K V SG +++ G + PPE+ I LS + A LARR DEP+A+ Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80 Query: 326 ESREFLRKLCVGKEVTFRVDYTAPNIGREF 415 +REFLRK +GKEV F ++ P GRE+ Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREY 109 Score = 41.6 bits (96), Expect = 7e-04 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 10/83 (12%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 328 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGKEVTFRVDYTAP 397 +REFLRK +GK+V VDY P Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRP 424
>UL49_HHV11 (P10233) Tegument protein UL49| Length = 301 Score = 30.8 bits (68), Expect = 1.3 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +3 Query: 63 PAKPPLPDLGSGGVGRSPPANPK 131 PA+ P P GSGG GR+P P+ Sbjct: 98 PARAPPPPAGSGGAGRTPTTAPR 120
>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 29.6 bits (65), Expect = 2.9 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +2 Query: 110 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEIPPEKSITLSYLM 277 + AG S+ ++A +TG + W+ + A TS +LI S + EK++ Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291 Query: 278 APRLA 292 PR A Sbjct: 292 LPRTA 296
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 29.6 bits (65), Expect = 2.9 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 2/111 (1%) Frame = -1 Query: 348 FLRNSLLSQANGSSTPPRRA-SLGAIRYDRVMDFSGGISALVLPMMRRQSPEVTAFTLPL 172 FL +SLLS A + PP S R R S S+ + P RR T F L Sbjct: 318 FLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLE 377 Query: 171 SH-PEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVWPAG*SLLSRPDPDPN 22 P+ P AP P LP +P + + P+ SLL P P P+ Sbjct: 378 GRGPQTPRRSRPRAPA--PVPQPFSLP--EPSQPILPSVLSLLGLPTPGPS 424
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.9 bits (63), Expect = 5.0 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +2 Query: 113 AAG--QSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGS 226 AAG +S+GA + G RG K+ T+GDC GS Sbjct: 66 AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105
>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 522 Score = 28.5 bits (62), Expect = 6.6 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Frame = -1 Query: 321 ANGSSTPPRRASLGAIRYDRVMDFSGG----ISALVLPMMRRQSPEVTAFTLPLSHPEAP 154 A G ++P +RASL D +GG +++L +PM QSP+ T + P AP Sbjct: 78 APGLASPTQRASL--FHSDPFAPGAGGGALPVASLAVPMDASQSPDSTPAPATPAAPAAP 135 Query: 153 VFDAMIAPWDWPAASG 106 A AP+ SG Sbjct: 136 A--APAAPFSSLGGSG 149
>OTCC_HAEIN (P44770) Ornithine carbamoyltransferase, catabolic (EC 2.1.3.3)| (OTCase) Length = 334 Score = 28.5 bits (62), Expect = 6.6 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +1 Query: 79 SRISDREXXXXXXXPIPRCYHGIEHRSFRMAKGQGEGCDFWGLPSHHG 222 S+I +E + R Y GIE+R F+ + Q E D+ G+P +G Sbjct: 83 SQIGHKESMKDTARVLGRMYDGIEYRGFKQSIVQ-ELADYAGVPVFNG 129
>RIBD2_BUCAI (P57534) 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC| 1.1.1.193) (HTP reductase) Length = 207 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -3 Query: 388 VIHSECDLLSYAKFPQKLPAFPSKWLIDSTTTSQPWGHKV*QSDGLLW 245 V + E D + + FP K+ P + +IDS QP H + ++ G +W Sbjct: 44 VRYKELDKKTLSIFPNKIFQHPIRVIIDSKNRVQP-SHNIIKTKGKIW 90
>GABR1_HUMAN (Q9UBS5) Gamma-aminobutyric acid type B receptor, subunit 1 precursor| (GABA-B receptor 1) (GABA-B-R1) (Gb1) Length = 961 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +3 Query: 45 REEISQPAKPPLPDLGSGGVGRSPPANPKVLS 140 R+++ PP P SGG+ R PP P LS Sbjct: 919 RQQLRSRRHPPTPPEPSGGLPRGPPEPPDRLS 950
>KCNC3_MOUSE (Q63959) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 769 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +3 Query: 63 PAKPPLPDLGSGGVGRSPPANP 128 P PP P GSGG+ PP P Sbjct: 581 PPPPPHPHHGSGGISPPPPITP 602
>CRTE_RHOCA (P17060) Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)| (GGPP synthetase) (Farnesyltranstransferase) Length = 289 Score = 28.1 bits (61), Expect = 8.6 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +2 Query: 188 AVTSGDCLLIMG----STKAEIPPEKSITLSYLMAPRLARRGGVDEPFAWES 331 AV +GD LLI G + + P++++ L + RGG+ AWES Sbjct: 106 AVLAGDSLLIRGFEVLADVGAVNPDRALKLISKLGQLSGARGGICAGQAWES 157
>KCNC3_RAT (Q01956) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 889 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +3 Query: 63 PAKPPLPDLGSGGVGRSPPANP 128 P PP P GSGG+ PP P Sbjct: 582 PPPPPHPHHGSGGISPPPPITP 603
>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 757 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +3 Query: 63 PAKPPLPDLGSGGVGRSPPANP 128 P PP P GSGG+ PP P Sbjct: 581 PPPPPHPHHGSGGISPPPPITP 602 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,263,355 Number of Sequences: 219361 Number of extensions: 1571661 Number of successful extensions: 5382 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5034 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5362 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
