ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl22d12 |
|---|---|
| Clone Library Name | barley_pub |
>NADAP_HUMAN (Q9BWU0) Kanadaptin (Kidney anion exchanger adapter protein)| (Solute carrier family 4 anion exchanger member 1 adapter protein) (Lung cancer oncogene 3 protein) Length = 796 Score = 47.0 bits (110), Expect = 2e-05 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 9/75 (12%) Frame = +1 Query: 268 LFGRHPDCHVLIDHPSVSRRHLEVR---------CKRRQRRITVTDLSSVHGTWVSGQRI 420 LFGR C V ++HPSVSR H ++ C + DL S HGT+++ RI Sbjct: 190 LFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRI 249 Query: 421 PPNTLVELVAGDTLQ 465 PP T + G ++ Sbjct: 250 PPRTYCRVHVGHVVR 264
>PP1R8_MOUSE (Q8R3G1) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1 regulatory inhibitor subunit 8) Length = 351 Score = 46.6 bits (109), Expect = 3e-05 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Frame = +1 Query: 268 LFGRHPD-CHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPPN 429 LFGR+PD C IDH S SR H + + +R+ + DL+S HGT++ R+ P+ Sbjct: 50 LFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPH 104
>PP1R8_HUMAN (Q12972) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1 regulatory inhibitor subunit 8) [Includes: Activator of RNA decay (EC 3.1.4.-) (ARD-1)] Length = 351 Score = 46.6 bits (109), Expect = 3e-05 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Frame = +1 Query: 268 LFGRHPD-CHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPPN 429 LFGR+PD C IDH S SR H + + +R+ + DL+S HGT++ R+ P+ Sbjct: 50 LFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPH 104
>PP1R8_BOVIN (Q28147) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1, regulatory inhibitor subunit 8) Length = 351 Score = 46.6 bits (109), Expect = 3e-05 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Frame = +1 Query: 268 LFGRHPD-CHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPPN 429 LFGR+PD C IDH S SR H + + +R+ + DL+S HGT++ R+ P+ Sbjct: 50 LFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPH 104
>Y1858_MYCBO (P64898) Hypothetical protein Mb1858| Length = 162 Score = 45.1 bits (105), Expect = 9e-05 Identities = 26/65 (40%), Positives = 40/65 (61%) Frame = +1 Query: 274 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPPNTLVELVAG 453 GRHPD + +D +VSRRH E R + + V D+ S++GT+V+ R P ++ V L G Sbjct: 80 GRHPDSDIFLDDVTVSRRHAEFRLENNE--FNVVDVGSLNGTYVN--REPVDSAV-LANG 134 Query: 454 DTLQL 468 D +Q+ Sbjct: 135 DEVQI 139
>Y1827_MYCTU (P64897) Hypothetical protein Rv1827/MT1875| Length = 162 Score = 45.1 bits (105), Expect = 9e-05 Identities = 26/65 (40%), Positives = 40/65 (61%) Frame = +1 Query: 274 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPPNTLVELVAG 453 GRHPD + +D +VSRRH E R + + V D+ S++GT+V+ R P ++ V L G Sbjct: 80 GRHPDSDIFLDDVTVSRRHAEFRLENNE--FNVVDVGSLNGTYVN--REPVDSAV-LANG 134 Query: 454 DTLQL 468 D +Q+ Sbjct: 135 DEVQI 139
>YOT2_CAEEL (P34648) Hypothetical protein ZK632.2| Length = 710 Score = 38.5 bits (88), Expect = 0.009 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Frame = +1 Query: 265 VLFGR-HPDCHVLIDHPSVSRRHLEVRCKRRQRRIT-----VTDLSSVHGTWVSGQRIPP 426 V+ GR P C +L++HPS+SR H ++ + T + +L S HG+ ++ +R+PP Sbjct: 108 VVIGRIKPGCDLLMEHPSISRYHCILQYGNDKMSKTGKGWHIFELGSTHGSRMNKKRLPP 167 Query: 427 NTLVELVAGDTLQ 465 + G Q Sbjct: 168 KQYIRTRVGFIFQ 180
>FAR10_YEAST (Q06001) Factor arrest protein 10| Length = 478 Score = 38.1 bits (87), Expect = 0.011 Identities = 20/55 (36%), Positives = 31/55 (56%) Frame = +1 Query: 304 DHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPPNTLVELVAGDTLQL 468 D +SR H + C ++ + DL S +GT+++GQRI N VE+ GD + L Sbjct: 138 DSRVLSRNHALLSCDPLTGKVYIRDLKSSNGTFINGQRIGSND-VEIKVGDVIDL 191
>VPS64_YEAST (Q03944) Vacuolar protein sorting protein 64 (Factor arrest protein| 9) Length = 604 Score = 37.7 bits (86), Expect = 0.015 Identities = 22/55 (40%), Positives = 31/55 (56%) Frame = +1 Query: 304 DHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPPNTLVELVAGDTLQL 468 D +SR H + C +I + DL S +GT+V+G +I N VEL GDT+ L Sbjct: 219 DSRVLSRNHACLSCDPTSGKIYIRDLKSSNGTFVNGVKIRQND-VELKVGDTVDL 272
>CDS1_SCHPO (Q09170) Serine/threonine-protein kinase cds1 (EC 2.7.11.1)| (Checkpoint kinase cds1) Length = 460 Score = 36.2 bits (82), Expect = 0.043 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Frame = +1 Query: 271 FGRHPDCHVLIDHPSVSRRHLEVRCKRR-----QRRITVTDLSSVHGTWVSGQRIPPNTL 435 FGRH C V+++ P VS H E+ R + S +GT+++ +R+ N+ Sbjct: 62 FGRHKSCEVVLNGPRVSNFHFEIYQGHRNDSDESENVVFLHDHSSNGTFLNFERLAKNSR 121 Query: 436 VELVAGDTLQL 468 L GD +++ Sbjct: 122 TILSNGDEIRI 132
>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1| Length = 2171 Score = 36.2 bits (82), Expect = 0.043 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +1 Query: 274 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWV 405 GR PDC V + PS+S++H E+ + + D S++GT + Sbjct: 57 GRMPDCSVALPFPSISKQHAEIEILAWDKAPILRDCGSLNGTQI 100
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear| factor with BRCT domains 1) Length = 2089 Score = 36.2 bits (82), Expect = 0.043 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +1 Query: 274 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWV 405 GR PDC V + PS+S++H E+ + + D S++GT + Sbjct: 57 GRMPDCSVALPFPSISKQHAEIEILAWDKAPILRDCGSLNGTQI 100
>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1| Length = 2173 Score = 36.2 bits (82), Expect = 0.043 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +1 Query: 274 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWV 405 GR PDC V + PS+S++H E+ + + D S++GT + Sbjct: 57 GRMPDCSVALPFPSISKQHAEIEILAWDKAPILRDCGSLNGTQI 100
>MDC1_MOUSE (Q5PSV9) Mediator of DNA damage checkpoint protein 1| Length = 1707 Score = 35.0 bits (79), Expect = 0.097 Identities = 18/62 (29%), Positives = 32/62 (51%) Frame = +1 Query: 220 GPDRDRVEEEAEDPPVLFGRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGT 399 GP+RD ++ + GR PDC V + PS+S++H + + + D S++GT Sbjct: 42 GPERDFPLYLGKN---VVGRSPDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGT 98 Query: 400 WV 405 + Sbjct: 99 QI 100
>MDC1_RAT (Q5U2M8) Mediator of DNA damage checkpoint protein 1| Length = 1279 Score = 35.0 bits (79), Expect = 0.097 Identities = 18/62 (29%), Positives = 32/62 (51%) Frame = +1 Query: 220 GPDRDRVEEEAEDPPVLFGRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGT 399 GP+RD ++ + GR PDC V + PS+S++H + + + D S++GT Sbjct: 42 GPERDFPLYLGKN---VVGRSPDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGT 98 Query: 400 WV 405 + Sbjct: 99 QI 100
>ABA2_LYCES (P93236) Zeaxanthin epoxidase, chloroplast precursor (EC| 1.14.13.90) Length = 669 Score = 34.7 bits (78), Expect = 0.13 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +1 Query: 283 PDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVS 408 P +++ P VS H + CK VTDL S HGTWV+ Sbjct: 574 PGKSIVLPLPQVSEMHARISCK--DGAFFVTDLRSEHGTWVT 613
>ABA2_PRUAR (O81360) Zeaxanthin epoxidase, chloroplast precursor (EC| 1.14.13.90) (PA-ZE) Length = 661 Score = 34.3 bits (77), Expect = 0.16 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 10/82 (12%) Frame = +1 Query: 253 EDPPVLFGRHPD-----CHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSG-- 411 E P + G P + I P VS H + K +TDL S HGTW++ Sbjct: 554 EKNPCIIGSAPHGDVSGISIAIPKPQVSEMHARISYK--DGAFYLTDLRSEHGTWIADIE 611 Query: 412 ---QRIPPNTLVELVAGDTLQL 468 R+PPN D +++ Sbjct: 612 GKRYRVPPNFPARFRPSDAIEI 633
>RAD53_YEAST (P22216) Serine/threonine-protein kinase RAD53 (EC 2.7.11.1)| (Serine-protein kinase 1) Length = 821 Score = 33.1 bits (74), Expect = 0.37 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = +1 Query: 271 FGRHPDCHVLIDHPS-VSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPPNTLVELV 447 FGR+P C + + S +S +H ++ + + D+S+ +GTW++GQ++ N+ L Sbjct: 68 FGRNPACDYHLGNISRLSNKHFQILLGE-DGNLLLNDIST-NGTWLNGQKVEKNSNQLLS 125 Query: 448 AGDTL 462 GD + Sbjct: 126 QGDEI 130
>Y1895_SYNY3 (P74101) Hypothetical protein sll1895| Length = 696 Score = 32.0 bits (71), Expect = 0.82 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 8/73 (10%) Frame = +1 Query: 274 GRHPDCHVLIDHPSVSRRHLEVRCKRRQR-----RITVTDLS---SVHGTWVSGQRIPPN 429 GRHP ++I P +SRRH + K I DL S +G WV+G+ + Sbjct: 26 GRHPSNTIVIPSPQISRRHATLIKKINPNLDISFHIIDGDLEGHRSRNGVWVNGE---SH 82 Query: 430 TLVELVAGDTLQL 468 ELV GD + L Sbjct: 83 LDYELVHGDVIAL 95
>ABA2_NICPL (Q40412) Zeaxanthin epoxidase, chloroplast precursor (EC| 1.14.13.90) Length = 663 Score = 30.4 bits (67), Expect = 2.4 Identities = 17/42 (40%), Positives = 21/42 (50%) Frame = +1 Query: 283 PDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVS 408 P V+I P VS H + K VTDL S HGTW++ Sbjct: 568 PGKSVVIPLPQVSEMHARISYKGGA--FFVTDLRSEHGTWIT 607
>Y4449_ARATH (O23305) FHA domain-containing protein At4g14490| Length = 386 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = +1 Query: 295 VLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPPNTLVELVAGDTLQL 468 + I +S +HL R + + DL S +GT ++ + P T V L GD ++L Sbjct: 39 IAIKDAGISTKHL--RIESDSGNWVIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKL 94
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 29.3 bits (64), Expect = 5.3 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = +1 Query: 274 GRHPDCHVLIDHPSVSRRHLEVRCKRRQRRITVTDLSSVHGTWV 405 GR P+C V + S+S++H + + + D S++GT + Sbjct: 57 GRMPECSVALPFSSISKQHAVIEILAWNKAPVLRDCGSLNGTQI 100
>UL24_EHV1V (Q6S6T4) Protein UL24 homolog| Length = 272 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = +1 Query: 319 SRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPPNTLVELVAGDTLQ 465 SR +RC R V DL+S V G+R+ P ELV +TL+ Sbjct: 11 SRLRAGIRCHNRFYNAMVQDLASAKRNGVYGERLAP-LFSELVPAETLK 58
>UL24_EHV1B (P28927) Protein UL24 homolog| Length = 272 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = +1 Query: 319 SRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPPNTLVELVAGDTLQ 465 SR +RC R V DL+S V G+R+ P ELV +TL+ Sbjct: 11 SRLRAGIRCHNRFYNAMVQDLASAKRNGVYGERLAP-LFSELVPAETLK 58
>UL24_EHV1 (P09314) Protein UL24 homolog| Length = 272 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = +1 Query: 319 SRRHLEVRCKRRQRRITVTDLSSVHGTWVSGQRIPPNTLVELVAGDTLQ 465 SR +RC R V DL+S V G+R+ P ELV +TL+ Sbjct: 11 SRLRAGIRCHNRFYNAMVQDLASAKRNGVYGERLAP-LFSELVPAETLK 58
>TULP1_MOUSE (Q9Z273) Tubby-related protein 1 (Tubby-like protein 1)| Length = 543 Score = 28.9 bits (63), Expect = 6.9 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +1 Query: 133 PIAAFAVAKGGVVLKHIFLNGPPTEAARRGPDRDRVEEEAE 255 P A F V +GG K + GPP +G + ++ EEE E Sbjct: 215 PAAMFLVGEGGAAEKGVKKKGPP-----KGSEEEKKEEEEE 250 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,216,333 Number of Sequences: 219361 Number of extensions: 671423 Number of successful extensions: 2482 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2399 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2476 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
