ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl22d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AVP_HORVU (Q06572) Pyrophosphate-energized vacuolar membrane pro... 49 5e-06
2AVP_PHAAU (P21616) Pyrophosphate-energized vacuolar membrane pro... 39 0.005
3AVP1_ARATH (P31414) Pyrophosphate-energized vacuolar membrane pr... 37 0.019

>AVP_HORVU (Q06572) Pyrophosphate-energized vacuolar membrane proton pump (EC|
           3.6.1.1) (Pyrophosphate-energized inorganic
           pyrophosphatase) (H(+)-PPase)
          Length = 762

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +3

Query: 99  MAILGELGTEILIPVCGVIGIVF 167
           MAILGELGTEILIPVCGVIGIVF
Sbjct: 1   MAILGELGTEILIPVCGVIGIVF 23



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>AVP_PHAAU (P21616) Pyrophosphate-energized vacuolar membrane proton pump (EC|
           3.6.1.1) (Pyrophosphate-energized inorganic
           pyrophosphatase) (H(+)-PPase) (Vacuolar
           H(+)-pyrophosphatase)
          Length = 764

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +3

Query: 102 AILGELGTEILIPVCGVIGIVF 167
           AIL +LGTEILIPVC VIGI F
Sbjct: 3   AILPDLGTEILIPVCAVIGIAF 24



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>AVP1_ARATH (P31414) Pyrophosphate-energized vacuolar membrane proton pump 1|
           (EC 3.6.1.1) (Pyrophosphate-energized inorganic
           pyrophosphatase 1) (H(+)-PPase 1) (Vacuolar proton
           pyrophosphatase 1) (Vacuolar proton pyrophosphatase 3)
          Length = 770

 Score = 36.6 bits (83), Expect = 0.019
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +3

Query: 90  LTAMAILGELGTEILIPVCGVIGIVF 167
           + A A+L EL TEIL+P+C VIGI F
Sbjct: 1   MVAPALLPELWTEILVPICAVIGIAF 26


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,835,337
Number of Sequences: 219361
Number of extensions: 87734
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 80,573,946
effective HSP length: 31
effective length of database: 73,773,755
effective search space used: 1770570120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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