ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl22d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VGLB_SHV1 (Q04464) Glycoprotein B precursor 29 6.7
2PME3_CAEEL (Q867X0) Poly(ADP-ribose) glycohydrolase pme-3 (EC 3.... 29 6.7
3ICAM5_RABIT (Q28730) Intercellular adhesion molecule 5 precursor... 28 8.7
4RPOB_ODOSI (P49466) DNA-directed RNA polymerase beta chain (EC 2... 28 8.7
5LE756_CAEEL (Q11184) Protein let-756 (Lethal protein 756) 28 8.7
6MR1B2_BRARE (Q90456) Melatonin receptor type 1B Z6.2 (Fragment) 28 8.7

>VGLB_SHV1 (Q04464) Glycoprotein B precursor|
          Length = 920

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -1

Query: 449 INRHTTAIILRSRWNTANPPSS 384
           I+RH T ++LR R NTA PPSS
Sbjct: 886 ISRHLTDMVLRKR-NTARPPSS 906



to top

>PME3_CAEEL (Q867X0) Poly(ADP-ribose) glycohydrolase pme-3 (EC 3.2.1.143) (Poly|
           ADP-ribose metabolism enzyme 3)
          Length = 781

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +3

Query: 105 MATAVASQPRHFTLGGEPR-AAICAASTSKICTLDKAYGFRFVCRSVVDLRSKKFHSQIS 281
           +A  VA +P HF   GEP  AA C     ++   D   G  F   +   L  K F   + 
Sbjct: 697 IAAGVADRPLHFCSFGEPELAAKCKKIIERMKQKDVTLGMLFSMINNTGLPHKHFEFYVF 756

Query: 282 KR-KCYLTSS 308
            R   YL+SS
Sbjct: 757 DRISTYLSSS 766



to top

>ICAM5_RABIT (Q28730) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 912

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
 Frame = +3

Query: 141 TLGGEPRAAICAASTSKICTLDKAYGFRFVCRSVVDLRSK---KFHSQISKRKCYLTSSP 311
           +  GEP  A  A  T+ +    + +G  F CR+ +DLR +    F +  + R+ +  + P
Sbjct: 165 SFAGEPARARGAVLTATVLARREDHGANFSCRAELDLRPQGLALFENSSAPRQLWTYALP 224

Query: 312 SEFEKIILSVRWLEFRRQRI 371
            +  + +L+ R LE   Q +
Sbjct: 225 LDSPR-LLAPRVLEVDSQSL 243



to top

>RPOB_ODOSI (P49466) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1379

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = +3

Query: 249 LRSKKFHSQISKRKCYLTSSPSEFEKIILSVRWLEFRRQRIAFQ 380
           L+S K + +ISK    +T+SP + ++I L ++WL+  ++   F+
Sbjct: 200 LKSFKIYQKISK----ITNSPIKVQRIKLFLQWLKLNQKEFNFK 239



to top

>LE756_CAEEL (Q11184) Protein let-756 (Lethal protein 756)|
          Length = 425

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 357 RRQRIAFQRTGRWVRSIPSASQDDGS-GVSVNGVPQ 461
           RR+   F R+G W+  +P  + DDGS  V V+G  +
Sbjct: 71  RRRGALFCRSGTWLEMLPIENPDDGSTRVKVHGTKE 106



to top

>MR1B2_BRARE (Q90456) Melatonin receptor type 1B Z6.2 (Fragment)|
          Length = 157

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -3

Query: 318 IPTVNLLSSTFS*KFGNGIFYSLDQQHFCIRI*-IHMLCPGCKSLMCWLRRWLPSVRLRG 142
           +P ++L S T+  +  +  F       + I +  +H L P      C+LR W+  +R+R 
Sbjct: 35  LPNLSLGSLTYDPRVYSCTFSQTTSAGYTIAVVTVHFLLPIAVVTFCYLRIWVLVLRVRR 94

Query: 141 *SVAAATPRRSPSGL 97
                  PR  PS L
Sbjct: 95  RVTTDVRPRLRPSEL 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,137,837
Number of Sequences: 219361
Number of extensions: 1249814
Number of successful extensions: 3034
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3034
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top