>FOXJ1_MOUSE (Q61660) Forkhead box protein J1 (Forkhead-related protein FKHL13)|
           (Hepatocyte nuclear factor 3 forkhead homolog 4) (HFH-4)
          Length = 421

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 26  HEHHTAMASQKPEA*GSPFGLLLQPARVSREPIESREKAEGRRPWGTGRG 175
           H      ASQ+P A  +P+G  L   R +++ ++  E+A G   WGTG G
Sbjct: 221 HPAFARQASQEPSA--APWGGPLTVNREAQQLLQEFEEATGEGGWGTGEG 268

>SYV_METBF (Q46B32) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 869

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -3

Query: 245 QNKVKKEKSGSGTEKPWVEEQEQYLFPSPMAGDPRPFLLIQLAPC*PWPAG 93
           ++++ KE + S  E+ W+++ +  ++      DPRP  +I   P  P+P G
Sbjct: 3   ESEIPKEYNASEVEEKWMDKWDLSMYHFNWGEDPRPQYIIDTPP--PYPTG 51

>RAG2_ONCMY (Q91193) V(D)J recombination-activating protein 2 (RAG-2)|
          Length = 533

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = -3

Query: 422 KELELEGEQPIPLHRHGLETVVFHPAEPTERERSLMMDSCVLFRGRGGLPA 270
           +E EL GEQP P + H L  V           +SL   +CV+F GR  +PA
Sbjct: 125 QERELVGEQPGPRYGHTLSMV-----------QSLGKRACVVFGGRSYMPA 164

>SYV_METAC (Q8TLI4) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 869

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -3

Query: 245 QNKVKKEKSGSGTEKPWVEEQEQYLFPSPMAGDPRPFLLIQLAPC*PWPAG 93
           ++++ KE + +  E+ W+E+    ++      DPRP  +I   P  P+P G
Sbjct: 3   ESEIPKEYNANEVEEKWMEKWNLSMYHFNWGEDPRPQYIIDTPP--PYPTG 51

>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)|
          Length = 924

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +1

Query: 370 NPCL---WRGIGCSPSNSSSFLVVTKVDL 447
           +PC+   W+G+ C  SN SS  V+TK+DL
Sbjct: 386 DPCMLFPWKGVACDGSNGSS--VITKLDL 412

>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1|
           precursor (EC 2.7.11.1) (BRI1-associated receptor kinase
           1) (Somatic embryogenesis receptor-like kinase 3)
          Length = 615

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 352 WNTTVSNPCLWRGIGCSPSNSSSFLVVTKVDL 447
           W+ T+  PC W  + C+  NS     VT+VDL
Sbjct: 49  WDATLVTPCTWFHVTCNSDNS-----VTRVDL 75

>GAP_CAEEL (P34288) GTPase-activating protein GAP (CeGAP)|
          Length = 1317

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 254 RWRQNKVKKEKSGSGTEKPWVEEQEQYLFPSPMAGDPRPFLLIQLAPC 111
           +W+++K  K+ SG G+       Q+Q       AG P+P L +++A C
Sbjct: 623 KWKKSKAAKQGSGGGSSGSSSGSQQQ-----GAAGAPQPVLGVRIADC 665

>SCN7A_HUMAN (Q01118) Sodium channel protein type 7 alpha subunit (Sodium|
           channel protein type VII alpha subunit) (Putative
           voltage-gated sodium channel alpha subunit Nax) (Sodium
           channel protein, cardiac and skeletal muscle
           alpha-subunit)
          Length = 1682

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 245 QNKVKKEKSGSGTEKPWVEEQEQYLFPSPMAGDPRP 138
           Q+ +K ++  SGTEK   E + Q L PSP   +  P
Sbjct: 802 QDFLKDKEKSSGTEKNATENESQSLIPSPSVSETVP 837

>FOXJ1_RAT (Q63247) Forkhead box protein J1 (Hepatocyte nuclear factor 3|
           forkhead homolog 4) (HFH-4)
          Length = 421

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +2

Query: 26  HEHHTAMASQKPEA*GSPFGLLLQPARVSREPIESREKAEGRRPWGTGRGTV----PAPL 193
           H      A+Q+P    +P+G  L   R +++ ++  E+A G   WGTG G +      PL
Sbjct: 221 HPAFARQAAQEPST--APWGGPLTVNREAQQLLQEFEEATGEGGWGTGEGRLGHKRKQPL 278

Query: 194 P 196
           P
Sbjct: 279 P 279

>PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precursor (Parotid|
           salivary glycoprotein G1) (Proline-rich protein G1)
          Length = 309

 Score = 26.6 bits (57), Expect(2) = 3.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 12  PKPEGTSTTQPWPPRNPKPRGVP 80
           P P+G + +Q  PPR  KP G P
Sbjct: 144 PPPQGGNQSQGPPPRPGKPEGPP 166



 Score = 26.6 bits (57), Expect(2) = 3.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 12  PKPEGTSTTQPWPPRNPKPRGVP 80
           P P+G + +Q  PPR  KP G P
Sbjct: 60  PPPQGGNQSQGPPPRPGKPEGQP 82



 Score = 25.0 bits (53), Expect(2) = 8.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 12  PKPEGTSTTQPWPPRNPKPRGVP 80
           P P+G + +Q  PPR  +P G P
Sbjct: 102 PPPQGGNQSQGPPPRPGEPEGPP 124



 Score = 21.9 bits (45), Expect(2) = 3.0
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = +2

Query: 59  PEA*GSPFGLLLQPARVSREPIESREKAEGRRPWGTGRGTVPAPLP 196
           P   G P G   Q    S+ P     K EG  P G  +   P P P
Sbjct: 177 PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRP 222



 Score = 21.9 bits (45), Expect(2) = 8.0
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = +2

Query: 59  PEA*GSPFGLLLQPARVSREPIESREKAEGRRPWGTGRGTVPAPLP 196
           P   G P G   Q    S+ P     K EG  P G  +   P P P
Sbjct: 156 PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRP 201



 Score = 21.9 bits (45), Expect(2) = 3.0
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = +2

Query: 59  PEA*GSPFGLLLQPARVSREPIESREKAEGRRPWGTGRGTVPAPLP 196
           P   G P G   Q    S+ P     K EG  P G  +   P P P
Sbjct: 114 PPRPGEPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRP 159

>VILI_MOUSE (Q62468) Villin-1|
          Length = 826

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 344 EPTERERSLMMDSCVLFRGRGGLPAA-AAMDRWRQNKVKKEK 222
           +P+ +E  L  +     R  G  PAA +A+ RW+Q  +KKEK
Sbjct: 784 DPSRKEEHLSTEDFT--RALGMTPAAFSALPRWKQQNIKKEK 823

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +3

Query: 3   KCRPKPEGTSTTQPWPPRNPKPRGVPLAYCSSRPGSAGSQLNQEKRPRVAG 155
           K +PKP    T  P PP+ PKP+  P    +  P        Q K P   G
Sbjct: 11  KPQPKPPPAPTPSPCPPQPPKPQPKPPPAPTPSPCPPQPPKPQPKPPPAPG 61



 Score = 28.9 bits (63), Expect = 6.0
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 3   KCRPKPEGTSTTQPWPPRNPK--PRGVPLAYCSSRPGSAGS 119
           K +PKP    T  P PP+ PK  P+  P    S +PG + S
Sbjct: 31  KPQPKPPPAPTPSPCPPQPPKPQPKPPPAPGPSPKPGPSPS 71

>MMP9_HUMAN (P14780) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
           (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
           (Gelatinase B) (GELB) [Contains: 67 kDa matrix
           metalloproteinase-9; 82 kDa matrix metalloproteinase-9]
          Length = 707

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = +3

Query: 12  PKPEGTSTTQPWPPRNPKPRGVPLAYCSSRP--GSAGSQLNQEKRPRVAG 155
           P+P  T+T QP  P    P G P  + S RP  G  G        P  AG
Sbjct: 451 PRPPTTTTPQPTAPPTVCPTGPPTVHPSERPTAGPTGPPSAGPTGPPTAG 500

>VILI_HUMAN (P09327) Villin-1|
          Length = 826

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
 Frame = -3

Query: 389 PLHRHGLETVVFHPAE-------PTERERSLMMDSCVLFRGRGGLPAA-AAMDRWRQNKV 234
           PL    LE +V  P E       P+ +E  L ++     +  G  PAA +A+ RW+Q  +
Sbjct: 762 PLPIFPLEQLVNKPVEELPEGVDPSRKEEHLSIEDFT--QAFGMTPAAFSALPRWKQQNL 819

Query: 233 KKEK 222
           KKEK
Sbjct: 820 KKEK 823

>RIMM_BURPS (Q63S31) Probable 16S rRNA-processing protein rimM|
          Length = 211

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 377 HGLETVVFHPAEPTERERSLMMDSCVLFRGRGGLPAAAA 261
           HG +TVV HP    +R+ +L +    +F  RG  PA AA
Sbjct: 93  HG-DTVVAHPDGSVDRDTALALRGARVFVRRGDFPALAA 130

>RIMM_BURMA (Q62M51) Probable 16S rRNA-processing protein rimM|
          Length = 211

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 377 HGLETVVFHPAEPTERERSLMMDSCVLFRGRGGLPAAAA 261
           HG +TVV HP    +R+ +L +    +F  RG  PA AA
Sbjct: 93  HG-DTVVAHPDGSVDRDTALALRGARVFVRRGDFPALAA 130

>R4RL1_HUMAN (Q86UN2) Reticulon-4 receptor-like 1 precursor (Nogo-66 receptor|
           homolog 2) (Nogo-66 receptor-related protein 3) (NgR3)
           (Nogo receptor-like 2)
          Length = 441

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 65  LRVSGRPWLCGARALGFW 12
           LR++G PW CG RA   W
Sbjct: 250 LRLNGNPWDCGCRARSLW 267

>CJ095_HUMAN (Q9H7T3) Protein C10orf95|
          Length = 257

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = +3

Query: 15  KPEGTSTTQPWPPRNPKPR--GVPLAYCSSRP--GSAGSQLNQE---KRPRVAGHGGR 167
           +P G +T    PPR+P+PR  G P    + RP  G A    +++   +RPR     GR
Sbjct: 99  RPHGNTTASTAPPRHPRPRRPGGPALRPTPRPCAGPAPPPASRDCRCRRPRRWPRAGR 156

>Y091_NPVOP (O10341) Hypothetical 29.3 kDa protein (ORF92)|
          Length = 279

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +3

Query: 12  PKPEGTSTTQPWPPRNPKPRGVPLAYCSSRPGSAGS--QLNQEKRPRVAG 155
           P P  T    P PP +P P G P+ +    P S G+  QL    RP   G
Sbjct: 173 PTPSPTPPPSPTPPPSPSPLGDPMYF----PSSVGTTDQLRDYIRPLCNG 218

>QOR_SALTY (P40783) Quinone oxidoreductase (EC 1.6.5.5) (NADPH:quinone|
           reductase) (Zeta-crystallin homolog protein)
          Length = 327

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
 Frame = -3

Query: 392 IPLHRHG----LETVVFHPAEPTERE 327
           I  H+HG    L+TV F PAEP E E
Sbjct: 5   IEFHKHGGPEVLQTVEFTPAEPAEHE 30

>VGLC_HHV1K (P28986) Glycoprotein C precursor|
          Length = 511

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 12  PKPEGTSTTQPWPPRNPKPRGVPLAYCSSRPGSAGSQLNQEKRPRVAGHGGREEV 176
           PKP  T  + P    +PKP+       S RP      +  ++R  +A +G R ++
Sbjct: 88  PKPTSTPKSPPTSTPDPKPKNNTTPAKSGRPTKPPGPVWCDRRDPLARYGSRVQI 142

>VGLC_HHV11 (P10228) Glycoprotein C precursor|
          Length = 511

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 12  PKPEGTSTTQPWPPRNPKPRGVPLAYCSSRPGSAGSQLNQEKRPRVAGHGGREEV 176
           PKP  T  + P    +PKP+       S RP      +  ++R  +A +G R ++
Sbjct: 88  PKPTSTPKSPPTSTPDPKPKNNTTPAKSGRPTKPPGPVWCDRRDPLARYGSRVQI 142

>FLGH_BURPS (Q63YB2) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 240

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 6   CRPKPEGTSTTQPWPPRNPKPRGVPLAYCSSRPGSAGSQLNQEKRPRVAG 155
           C   P    T QP     P P  +        PG AG  L +++RPR  G
Sbjct: 37  CAQIPREPITQQPMSAMPPMPPAMQAPGSIYNPGYAGRPLFEDQRPRNVG 86

>BDF1_YEAST (P35817) Protein BDF1|
          Length = 686

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 290 GRGGLPAAAAMDRWRQNKVKKEKSGSGTEKPWVEEQEQYLFPSPMAGDPRP 138
           G  G  A  +     Q  +KKE+ G GT++  ++E  +   P  +  +P P
Sbjct: 83  GENGYNATGSGAEDEQQGLKKEEGGQGTKQEDLDENSKQELPMEVPKEPAP 133

>CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell surface|
           antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Lymphocyte
           antigen Ly-37)
          Length = 344

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +3

Query: 3   KCRPKPEGTSTTQPWPPRNPKPRGVPLAYCSSRPG 107
           K RP P GT   Q   P  P+PR  P   C S  G
Sbjct: 303 KKRPPPSGTQIHQQKGPPLPRPRVQPKPPCGSGDG 337

>LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independent|
            alpha-latrotoxin receptor 1)
          Length = 1472

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 18   PEGTSTTQPWPPRNPKPRGVPLAYCSSRP 104
            PEG S   P PP  P P G P  Y +SRP
Sbjct: 1400 PEGPSEALPPPP--PAPPGPPEIYYTSRP 1426

>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2|
          Length = 1125

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 9   RPKPEGTSTTQPWPPRNPKPRGVP--LAYCSSRPGSAGSQ-LNQEKRPRVAGH 158
           RP PEG    +  P  +P+P G P   A  S RPG+   Q   +  +PR AG+
Sbjct: 260 RPDPEGQRPDKKRPGISPRPIGGPNQRANTSQRPGAPIRQGKTRPGQPRSAGN 312

>SYL_PYRKO (Q8NKR7) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 967

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +2

Query: 323 ISRALWAQPGGTQPSPIHAYGGESVAPLLTPVPSWW 430
           IS  LW + GG         G  S+AP   PVP WW
Sbjct: 801 ISEELWEKLGGE--------GFVSLAPWPEPVPEWW 828

>PSKR_DAUCA (Q8LPB4) Phytosulfokine receptor precursor (EC 2.7.11.1)|
           (Phytosulfokine LRR receptor kinase)
          Length = 1021

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +1

Query: 307 ESIMRDLSRSVGSAGWNTTVS---NPCLWRGIGCSPSNS 414
           E  MR L  S+    WN + S   N C W GI C  S S
Sbjct: 38  EGFMRGLESSIDGWKWNESSSFSSNCCDWVGISCKSSVS 76

>LPHN1_HUMAN (O94910) Latrophilin-1 precursor (Calcium-independent|
            alpha-latrotoxin receptor 1) (Lectomedin-2)
          Length = 1474

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 18   PEGTSTTQPWPPRNPKPRGVPLAYCSSRP 104
            PEG S   P PP  P P G P  Y +SRP
Sbjct: 1402 PEGPSEALPPPP--PAPPGPPEIYYTSRP 1428

>FLGH_BURMA (Q62ES7) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 222

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 6   CRPKPEGTSTTQPWPPRNPKPRGVPLAYCSSRPGSAGSQLNQEKRPRVAG 155
           C   P    T QP     P P  +        PG AG  L +++RPR  G
Sbjct: 19  CAQIPREPITQQPMSAMPPMPPAMQAPGSIYNPGYAGRPLFEDQRPRNVG 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,411,794
Number of Sequences: 219361
Number of extensions: 1526386
Number of successful extensions: 6114
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 5213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6023
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)