ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl22c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK106720.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 6e-77
2gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence 248 1e-62
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 248 1e-62
4dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic D... 248 1e-62
5gb|AC140471.2| Mus musculus BAC clone RP24-400H5 from chromosome... 42 1.4
6gb|AC120020.9| Mus musculus chromosome 16, clone RP24-251L14, co... 40 5.6
7gb|AC159451.1| Trypanosoma brucei chromosome 8 clone RPCI93-5H5,... 40 5.6
8gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 5.6
9gb|AC160987.4| Mus musculus BAC clone RP23-248O24 from chromosom... 40 5.6
10gb|AC126689.4| Mus musculus BAC clone RP23-166P10 from chromosom... 40 5.6
11ref|XM_819817.1| Trypanosoma brucei TREU927 clone RPCI93-5H5 hyp... 40 5.6
12gb|AC011282.3| Homo sapiens BAC clone CTD-2009F22 from 7, comple... 40 5.6
13emb|AL359703.13| Human DNA sequence from clone RP11-389N12 on ch... 40 5.6
14emb|BX000486.13| Zebrafish DNA sequence from clone DKEY-149M16 i... 40 5.6
15gb|DQ058201.1| Trifolium pratense clone tp44 microsatellite sequ... 40 5.6
16gb|AC026414.6| Homo sapiens chromosome 5 clone CTD-2036A18, comp... 40 5.6 
>dbj|AK106720.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-G07, full
            insert sequence
          Length = 1644

 Score =  295 bits (149), Expect = 6e-77
 Identities = 306/357 (85%), Gaps = 1/357 (0%)
 Strand = Plus / Plus

                                                                        
Query: 58   agaagatcatgctgtggcactttgggtaaagtggagaggaaaatggcgaacaggaattcg 117
            |||||||||  |||| ||||||||||||||||||||||||||||||| ||| ||||||| 
Sbjct: 1136 agaagatcagactgttgcactttgggtaaagtggagaggaaaatggcaaactggaattca 1195

                                                                        
Query: 118  atgctgtagagtggactgtcctttgtccactctcaaggcaaaaccaacgattgacaggaa 177
            ||||| |||||||||||||||||| || ||||| ||||||||||||||   || ||||||
Sbjct: 1196 atgctttagagtggactgtcctttatctactctaaaggcaaaaccaacacatggcaggaa 1255

                                                                        
Query: 178  gacctatattgttgttttcttcccacaaacaaggagttattcttgggtggacatgctact 237
            || ||||||  ||||||||||||| |  ||||| | |||||||||||| |||||||||||
Sbjct: 1256 gagctatatcattgttttcttcccccgtacaagaacttattcttgggtagacatgctact 1315

                                                                        
Query: 238  tgtcgatccaattgatcattaccctgtgccacttgcgaatggaactcatccgcaaatggc 297
            ||||  |||||||||  | || ||| ||||||| |  |||||||||||| ||||||||||
Sbjct: 1316 tgtccgtccaattgaggaatatcctctgccactggttaatggaactcat-cgcaaatggc 1374

                                                                        
Query: 298  gaaaggtggtgaaggatttgagtgttcctcgacgattcatcatgcagaagcttgctatct 357
            ||||| | ||||||||| ||||| ||||||||||||||||||||||||| |||||||| |
Sbjct: 1375 gaaagctagtgaaggatctgagtattcctcgacgattcatcatgcagaaacttgctattt 1434

                                                                     
Query: 358  caatgctaaactttggcgatgaacttcacactgaggccataattgagaatgctcgga 414
            | |||||||| ||| | || || ||||| || |||||  || |||||||||||||||
Sbjct: 1435 ccatgctaaattttagtgacgagcttcatacagaggctgtagttgagaatgctcgga 1491
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>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence
          Length = 158050

 Score =  248 bits (125), Expect = 1e-62
 Identities = 243/281 (86%), Gaps = 1/281 (0%)
 Strand = Plus / Minus

                                                                         
Query: 87    agtggagaggaaaatggcgaacaggaattcgatgctgtagagtggactgtcctttgtcca 146
             |||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||| || |
Sbjct: 45194 agtggagaggaaaatggcaaactggaattcaatgctttagagtggactgtcctttatcta 45135

                                                                         
Query: 147   ctctcaaggcaaaaccaacgattgacaggaagacctatattgttgttttcttcccacaaa 206
             |||| ||||||||||||||   || |||||||| ||||||  ||||||||||||| |  |
Sbjct: 45134 ctctaaaggcaaaaccaacacatggcaggaagagctatatcattgttttcttcccccgta 45075

                                                                         
Query: 207   caaggagttattcttgggtggacatgctacttgtcgatccaattgatcattaccctgtgc 266
             |||| | |||||||||||| |||||||||||||||  |||||||||  | || ||| |||
Sbjct: 45074 caagaacttattcttgggtagacatgctacttgtccgtccaattgaggaatatcctctgc 45015

                                                                         
Query: 267   cacttgcgaatggaactcatccgcaaatggcgaaaggtggtgaaggatttgagtgttcct 326
             |||| |  |||||||||||| ||||||||||||||| | ||||||||| ||||| |||||
Sbjct: 45014 cactggttaatggaactcat-cgcaaatggcgaaagctagtgaaggatctgagtattcct 44956

                                                      
Query: 327   cgacgattcatcatgcagaagcttgctatctcaatgctaaa 367
             |||||||||||||||||||| |||||||| || ||||||||
Sbjct: 44955 cgacgattcatcatgcagaaacttgctatttccatgctaaa 44915
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  248 bits (125), Expect = 1e-62
 Identities = 243/281 (86%), Gaps = 1/281 (0%)
 Strand = Plus / Plus

                                                                            
Query: 87       agtggagaggaaaatggcgaacaggaattcgatgctgtagagtggactgtcctttgtcca 146
                |||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||| || |
Sbjct: 29317437 agtggagaggaaaatggcaaactggaattcaatgctttagagtggactgtcctttatcta 29317496

                                                                            
Query: 147      ctctcaaggcaaaaccaacgattgacaggaagacctatattgttgttttcttcccacaaa 206
                |||| ||||||||||||||   || |||||||| ||||||  ||||||||||||| |  |
Sbjct: 29317497 ctctaaaggcaaaaccaacacatggcaggaagagctatatcattgttttcttcccccgta 29317556

                                                                            
Query: 207      caaggagttattcttgggtggacatgctacttgtcgatccaattgatcattaccctgtgc 266
                |||| | |||||||||||| |||||||||||||||  |||||||||  | || ||| |||
Sbjct: 29317557 caagaacttattcttgggtagacatgctacttgtccgtccaattgaggaatatcctctgc 29317616

                                                                            
Query: 267      cacttgcgaatggaactcatccgcaaatggcgaaaggtggtgaaggatttgagtgttcct 326
                |||| |  |||||||||||| ||||||||||||||| | ||||||||| ||||| |||||
Sbjct: 29317617 cactggttaatggaactcat-cgcaaatggcgaaagctagtgaaggatctgagtattcct 29317675

                                                         
Query: 327      cgacgattcatcatgcagaagcttgctatctcaatgctaaa 367
                |||||||||||||||||||| |||||||| || ||||||||
Sbjct: 29317676 cgacgattcatcatgcagaaacttgctatttccatgctaaa 29317716
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>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0060O16
          Length = 164373

 Score =  248 bits (125), Expect = 1e-62
 Identities = 243/281 (86%), Gaps = 1/281 (0%)
 Strand = Plus / Plus

                                                                          
Query: 87     agtggagaggaaaatggcgaacaggaattcgatgctgtagagtggactgtcctttgtcca 146
              |||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||| || |
Sbjct: 114782 agtggagaggaaaatggcaaactggaattcaatgctttagagtggactgtcctttatcta 114841

                                                                          
Query: 147    ctctcaaggcaaaaccaacgattgacaggaagacctatattgttgttttcttcccacaaa 206
              |||| ||||||||||||||   || |||||||| ||||||  ||||||||||||| |  |
Sbjct: 114842 ctctaaaggcaaaaccaacacatggcaggaagagctatatcattgttttcttcccccgta 114901

                                                                          
Query: 207    caaggagttattcttgggtggacatgctacttgtcgatccaattgatcattaccctgtgc 266
              |||| | |||||||||||| |||||||||||||||  |||||||||  | || ||| |||
Sbjct: 114902 caagaacttattcttgggtagacatgctacttgtccgtccaattgaggaatatcctctgc 114961

                                                                          
Query: 267    cacttgcgaatggaactcatccgcaaatggcgaaaggtggtgaaggatttgagtgttcct 326
              |||| |  |||||||||||| ||||||||||||||| | ||||||||| ||||| |||||
Sbjct: 114962 cactggttaatggaactcat-cgcaaatggcgaaagctagtgaaggatctgagtattcct 115020

                                                       
Query: 327    cgacgattcatcatgcagaagcttgctatctcaatgctaaa 367
              |||||||||||||||||||| |||||||| || ||||||||
Sbjct: 115021 cgacgattcatcatgcagaaacttgctatttccatgctaaa 115061
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>gb|AC140471.2| Mus musculus BAC clone RP24-400H5 from chromosome 19, complete sequence
          Length = 185153

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 299    aaaggtggtgaaggatttgag 319
              |||||||||||||||||||||
Sbjct: 117356 aaaggtggtgaaggatttgag 117376
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>gb|AC120020.9| Mus musculus chromosome 16, clone RP24-251L14, complete sequence
          Length = 153700

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    gtggtgaaggatttgagtgt 322
              ||||||||||||||||||||
Sbjct: 147690 gtggtgaaggatttgagtgt 147709
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>gb|AC159451.1| Trypanosoma brucei chromosome 8 clone RPCI93-5H5, complete sequence
          Length = 159463

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    agtaccgaagaagatcatgc 69
             ||||||||||||||||||||
Sbjct: 13564 agtaccgaagaagatcatgc 13583
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 50      agtaccgaagaagatcatgc 69
               ||||||||||||||||||||
Sbjct: 1607022 agtaccgaagaagatcatgc 1607003
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>gb|AC160987.4| Mus musculus BAC clone RP23-248O24 from chromosome 16, complete
             sequence
          Length = 202729

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   gtggtgaaggatttgagtgt 322
             ||||||||||||||||||||
Sbjct: 38974 gtggtgaaggatttgagtgt 38993
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>gb|AC126689.4| Mus musculus BAC clone RP23-166P10 from chromosome 8, complete sequence
          Length = 206377

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 300   aaggtggtgaaggatttgagtgtt 323
             ||||||||||| ||||||||||||
Sbjct: 65789 aaggtggtgaatgatttgagtgtt 65766
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>ref|XM_819817.1| Trypanosoma brucei TREU927 clone RPCI93-5H5 hypothetical protein
           (Tb927.8.5420) partial mRNA
          Length = 1245

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 50  agtaccgaagaagatcatgc 69
           ||||||||||||||||||||
Sbjct: 343 agtaccgaagaagatcatgc 362
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>gb|AC011282.3| Homo sapiens BAC clone CTD-2009F22 from 7, complete sequence
          Length = 86106

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 234   tacttgtcgatccaattgatcatt 257
             ||||||| ||||||||||||||||
Sbjct: 66383 tacttgtggatccaattgatcatt 66360
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>emb|AL359703.13| Human DNA sequence from clone RP11-389N12 on chromosome X, complete
              sequence
          Length = 187779

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 353    tatctcaatgctaaactttg 372
              ||||||||||||||||||||
Sbjct: 115235 tatctcaatgctaaactttg 115216
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>emb|BX000486.13| Zebrafish DNA sequence from clone DKEY-149M16 in linkage group 10,
             complete sequence
          Length = 195419

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   ttgctatctcaatgctaaac 368
             ||||||||||||||||||||
Sbjct: 66300 ttgctatctcaatgctaaac 66281
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>gb|DQ058201.1| Trifolium pratense clone tp44 microsatellite sequence
          Length = 275

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  gtggagaggaaaatggcgaa 107
           ||||||||||||||||||||
Sbjct: 254 gtggagaggaaaatggcgaa 273
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>gb|AC026414.6| Homo sapiens chromosome 5 clone CTD-2036A18, complete sequence
          Length = 148065

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 57    aagaagatcatgctgtggcacttt 80
             |||||||||| |||||||||||||
Sbjct: 60895 aagaagatcaggctgtggcacttt 60872


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,529,009
Number of Sequences: 3902068
Number of extensions: 3529009
Number of successful extensions: 60175
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60110
Number of HSP's gapped (non-prelim): 61
length of query: 421
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 399
effective length of database: 17,147,199,772
effective search space: 6841732709028
effective search space used: 6841732709028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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