ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl22c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187173.1| Oryza sativa (japonica cultivar-group), mRNA 86 1e-13
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
3dbj|AP005752.5| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
4ref|XM_483727.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.10
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
6gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 46 0.10
7dbj|AP004044.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
8dbj|AP005480.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
9ref|XM_482928.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.40
10emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 44 0.40
11dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
12dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
13gb|AC108875.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
14ref|XM_424789.1| PREDICTED: Gallus gallus similar to Rho-guanine... 42 1.6
15gb|AC137617.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
16gb|BC012039.1| Mus musculus splicing factor, arginine/serine-ric... 42 1.6
17gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
18ref|NM_026499.2| Mus musculus splicing factor, arginine/serine-r... 42 1.6
19gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
20emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
21gb|AC008481.9| Homo sapiens chromosome 19 clone CTC-398G3, compl... 42 1.6
22gb|AY033944.1| Myxococcus xanthus probable regulatory protein ge... 42 1.6
23gb|AE011783.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.6
24dbj|AK146293.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-... 42 1.6
25dbj|AK133872.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 42 1.6
26gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.6
27dbj|AK159519.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 42 1.6
28dbj|AK171709.1| Mus musculus activated spleen cDNA, RIKEN full-l... 42 1.6
29dbj|AK004831.1| Mus musculus adult male lung cDNA, RIKEN full-le... 42 1.6
30dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
31dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
32dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
33dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 42 1.6
34gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
35emb|AL590418.16| Mouse DNA sequence from clone RP23-206I14 on ch... 42 1.6
36ref|XM_472176.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
37gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
38ref|XM_420351.1| PREDICTED: Gallus gallus similar to ring finger... 40 6.3
39gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.3
40gb|AE007269.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 6.3
41gb|AC165142.3| Mus musculus BAC clone RP24-484I1 from chromosome... 40 6.3
42emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.3
43ref|XM_762134.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 6.3
44gb|AY330485.1| Saccharopolyspora erythraea amino acid permease g... 40 6.3
45ref|NM_009109.1| Mus musculus ryanodine receptor 1, skeletal mus... 40 6.3
46gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.3
47emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.3
48gb|AY044272.1| Pseudomonas sp. B13 3-oxoadipate:succinyl-CoA tra... 40 6.3
49gb|AY268935.1| Mus musculus ryanodine receptor (Ryr1) mRNA, comp... 40 6.3
50gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.3
51dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
52dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
53dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
54dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
55gb|AE005120.1| Halobacterium sp. NRC-1 section 151 of 170 of the... 40 6.3
56gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 6.3
57dbj|AK066733.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
58gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.3
59gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
60emb|AL662979.3|OSJN00179 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
61emb|AL713946.3|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005... 40 6.3
62emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.3
63gb|AC164564.3| Mus musculus BAC clone RP23-96N11 from chromosome... 40 6.3 
>ref|NM_187173.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2688

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                       
Query: 382 gcgaggggttccagtgcaggtgtgcgcttgttctctccgcggcggtggccgcgctgctcg 441
           ||||||||||| |||||||||| ||  | ||||| || ||||||||||||||| | ||||
Sbjct: 323 gcgaggggttcgagtgcaggtgcgccgtcgttctgtcggcggcggtggccgcgattctcg 382

                                  
Query: 442 cattcacgcagcagaacgtgacg 464
           | |||||||||||||||||||||
Sbjct: 383 cgttcacgcagcagaacgtgacg 405



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 86  ccccaccttcctccgtgcgaccgagctccgcctcctccgctgc 128
           ||||||||||||||| | |  ||||||||||||||||||||||
Sbjct: 27  ccccaccttcctccgcgaggtcgagctccgcctcctccgctgc 69



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                    
Query: 202 cctctgccgtcgccgccgtcgaggtcggggactacgtggctgctatcgcctccgccg 258
           |||| ||||||||||||||||| | ||| ||||||| ||| ||  ||||||||||||
Sbjct: 143 cctccgccgtcgccgccgtcgacgccggcgactacgcggccgccctcgcctccgccg 199
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                            
Query: 382      gcgaggggttccagtgcaggtgtgcgcttgttctctccgcggcggtggccgcgctgctcg 441
                ||||||||||| |||||||||| ||  | ||||| || ||||||||||||||| | ||||
Sbjct: 15733456 gcgaggggttcgagtgcaggtgcgccgtcgttctgtcggcggcggtggccgcgattctcg 15733397

                                       
Query: 442      cattcacgcagcagaacgtgacg 464
                | |||||||||||||||||||||
Sbjct: 15733396 cgttcacgcagcagaacgtgacg 15733374



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                           
Query: 86       ccccaccttcctccgtgcgaccgagctccgcctcctccgctgc 128
                ||||||||||||||| | |  ||||||||||||||||||||||
Sbjct: 15733752 ccccaccttcctccgcgaggtcgagctccgcctcctccgctgc 15733710



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                         
Query: 202      cctctgccgtcgccgccgtcgaggtcggggactacgtggctgctatcgcctccgccg 258
                |||| ||||||||||||||||| | ||| ||||||| ||| ||  ||||||||||||
Sbjct: 15733636 cctccgccgtcgccgccgtcgacgccggcgactacgcggccgccctcgcctccgccg 15733580
to top
>dbj|AP005752.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0075N02
          Length = 186945

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                          
Query: 382    gcgaggggttccagtgcaggtgtgcgcttgttctctccgcggcggtggccgcgctgctcg 441
              ||||||||||| |||||||||| ||  | ||||| || ||||||||||||||| | ||||
Sbjct: 131313 gcgaggggttcgagtgcaggtgcgccgtcgttctgtcggcggcggtggccgcgattctcg 131254

                                     
Query: 442    cattcacgcagcagaacgtgacg 464
              | |||||||||||||||||||||
Sbjct: 131253 cgttcacgcagcagaacgtgacg 131231



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 86     ccccaccttcctccgtgcgaccgagctccgcctcctccgctgc 128
              ||||||||||||||| | |  ||||||||||||||||||||||
Sbjct: 131609 ccccaccttcctccgcgaggtcgagctccgcctcctccgctgc 131567



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                       
Query: 202    cctctgccgtcgccgccgtcgaggtcggggactacgtggctgctatcgcctccgccg 258
              |||| ||||||||||||||||| | ||| ||||||| ||| ||  ||||||||||||
Sbjct: 131493 cctccgccgtcgccgccgtcgacgccggcgactacgcggccgccctcgcctccgccg 131437
to top
>ref|XM_483727.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1851

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 420 gcggcggtggccgcgctgctcgc 442
           |||||||||||||||||||||||
Sbjct: 14  gcggcggtggccgcgctgctcgc 36
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 420      gcggcggtggccgcgctgctcgc 442
                |||||||||||||||||||||||
Sbjct: 27787266 gcggcggtggccgcgctgctcgc 27787288



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 211      tcgccgccgtcgaggtcgggga 232
                ||||||||||||||||||||||
Sbjct: 23410137 tcgccgccgtcgaggtcgggga 23410116
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 419    cgcggcggtggccgcgctgctcg 441
              |||||||||||||||||||||||
Sbjct: 816765 cgcggcggtggccgcgctgctcg 816743



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 414     ctctccgcggcggtggccgcgctg 437
               ||||||||||||| ||||||||||
Sbjct: 1947716 ctctccgcggcggcggccgcgctg 1947693
to top
>dbj|AP004044.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1125_C01
          Length = 123849

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 420    gcggcggtggccgcgctgctcgc 442
              |||||||||||||||||||||||
Sbjct: 120188 gcggcggtggccgcgctgctcgc 120210
to top
>dbj|AP005480.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0439B07
          Length = 89475

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 420   gcggcggtggccgcgctgctcgc 442
             |||||||||||||||||||||||
Sbjct: 41723 gcggcggtggccgcgctgctcgc 41745
to top
>ref|XM_482928.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 963

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 211 tcgccgccgtcgaggtcgggga 232
           ||||||||||||||||||||||
Sbjct: 206 tcgccgccgtcgaggtcgggga 185
to top
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 207    gccgtcgccgccgtcgaggtcg 228
              ||||||||||||||||||||||
Sbjct: 262709 gccgtcgccgccgtcgaggtcg 262730
to top
>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0451G12
          Length = 142182

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 211   tcgccgccgtcgaggtcgggga 232
             ||||||||||||||||||||||
Sbjct: 91974 tcgccgccgtcgaggtcgggga 91953
to top
>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1111_E05
          Length = 126978

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 211  tcgccgccgtcgaggtcgggga 232
            ||||||||||||||||||||||
Sbjct: 1552 tcgccgccgtcgaggtcgggga 1531
to top
>gb|AC108875.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1123_C08,
              complete sequence
          Length = 132017

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    gccgtcgccgccgtcgaggtc 227
              |||||||||||||||||||||
Sbjct: 128750 gccgtcgccgccgtcgaggtc 128770
to top
>ref|XM_424789.1| PREDICTED: Gallus gallus similar to Rho-guanine nucleotide exchange
            factor (LOC427201), partial mRNA
          Length = 4862

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 433  cgctgctcgcattcacgcagc 453
            |||||||||||||||||||||
Sbjct: 4141 cgctgctcgcattcacgcagc 4121
to top
>gb|AC137617.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0084P24, complete sequence
          Length = 148784

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 207   gccgtcgccgccgtcgaggtc 227
             |||||||||||||||||||||
Sbjct: 78362 gccgtcgccgccgtcgaggtc 78382
to top
>gb|BC012039.1| Mus musculus splicing factor, arginine/serine-rich 6, mRNA (cDNA
           clone MGC:6276 IMAGE:2648111), complete cds
          Length = 3567

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 352 tcctccgggaggatggcggaggggc 376
           |||||||||||| ||||||||||||
Sbjct: 132 tcctccgggaggctggcggaggggc 108
to top
>gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1281_H05,
             complete sequence
          Length = 163130

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 419   cgcggcggtggccgcgctgct 439
             |||||||||||||||||||||
Sbjct: 31581 cgcggcggtggccgcgctgct 31601
to top
>ref|NM_026499.2| Mus musculus splicing factor, arginine/serine-rich 6 (Sfrs6), mRNA
          Length = 3567

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 352 tcctccgggaggatggcggaggggc 376
           |||||||||||| ||||||||||||
Sbjct: 132 tcctccgggaggctggcggaggggc 108
to top
>gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0068E24, complete sequence
          Length = 141492

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 202    cctctgccgtcgccgccgtcg 222
              |||||||||||||||||||||
Sbjct: 134080 cctctgccgtcgccgccgtcg 134060
to top
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24,
              complete sequence
          Length = 164577

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 422    ggcggtggccgcgctgctcgc 442
              |||||||||||||||||||||
Sbjct: 148139 ggcggtggccgcgctgctcgc 148119
to top
>gb|AC008481.9| Homo sapiens chromosome 19 clone CTC-398G3, complete sequence
          Length = 142645

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   gcgaccgagctccgcctcctc 122
             |||||||||||||||||||||
Sbjct: 65118 gcgaccgagctccgcctcctc 65138
to top
>gb|AY033944.1| Myxococcus xanthus probable regulatory protein gene, partial cds;
           alcohol dehydrogenase and FapA (fapA) genes, complete
           cds; and unknown genes
          Length = 5590

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 416 ctccgcggcggtggccgcgctgctc 440
           |||||||||||||| ||||||||||
Sbjct: 939 ctccgcggcggtgggcgcgctgctc 963
to top
>gb|AE011783.1| Xanthomonas axonopodis pv. citri str. 306,  section 161 of 469 of the
             complete genome
          Length = 12465

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 332   cactgccgctgccgaggcgtt 352
             |||||||||||||||||||||
Sbjct: 11267 cactgccgctgccgaggcgtt 11247
to top
>dbj|AK146293.1| Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched
           library, clone:I730047L24 product:splicing factor,
           arginine/serine-rich 6, full insert sequence
          Length = 3524

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 352 tcctccgggaggatggcggaggggc 376
           |||||||||||| ||||||||||||
Sbjct: 123 tcctccgggaggctggcggaggggc 99
to top
>dbj|AK133872.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:5730471G08 product:splicing
           factor, arginine/serine-rich 6, full insert sequence
          Length = 3523

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 352 tcctccgggaggatggcggaggggc 376
           |||||||||||| ||||||||||||
Sbjct: 126 tcctccgggaggctggcggaggggc 102
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 422     ggcggtggccgcgctgctcgc 442
               |||||||||||||||||||||
Sbjct: 3390464 ggcggtggccgcgctgctcgc 3390484



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    cgtcgccgccgtcgaggtcg 228
              ||||||||||||||||||||
Sbjct: 133813 cgtcgccgccgtcgaggtcg 133794
to top
>dbj|AK159519.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
           library, clone:I420022J23 product:splicing factor,
           arginine/serine-rich 6, full insert sequence
          Length = 3523

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 352 tcctccgggaggatggcggaggggc 376
           |||||||||||| ||||||||||||
Sbjct: 123 tcctccgggaggctggcggaggggc 99
to top
>dbj|AK171709.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830006B22 product:splicing factor,
           arginine/serine-rich 6, full insert sequence
          Length = 2898

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 352 tcctccgggaggatggcggaggggc 376
           |||||||||||| ||||||||||||
Sbjct: 126 tcctccgggaggctggcggaggggc 102
to top
>dbj|AK004831.1| Mus musculus adult male lung cDNA, RIKEN full-length enriched
           library, clone:1210001E11 product:SPLICING FACTOR,
           ARGININE/SERINE-RICH 6 homolog [Homo sapiens], full
           insert sequence
          Length = 1753

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 352 tcctccgggaggatggcggaggggc 376
           |||||||||||| ||||||||||||
Sbjct: 126 tcctccgggaggctggcggaggggc 102
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 422      ggcggtggccgcgctgctcgc 442
                |||||||||||||||||||||
Sbjct: 25421581 ggcggtggccgcgctgctcgc 25421561



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 205      ctgccgtcgccgccgtcgag 224
                ||||||||||||||||||||
Sbjct: 18214189 ctgccgtcgccgccgtcgag 18214170
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 202      cctctgccgtcgccgccgtcg 222
                |||||||||||||||||||||
Sbjct: 22981573 cctctgccgtcgccgccgtcg 22981553
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 419      cgcggcggtggccgcgctgct 439
                |||||||||||||||||||||
Sbjct: 22442174 cgcggcggtggccgcgctgct 22442194



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 207      gccgtcgccgccgtcgaggtc 227
                |||||||||||||||||||||
Sbjct: 20240090 gccgtcgccgccgtcgaggtc 20240110



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                                
Query: 359      ggaggatggcggagg-ggccgcgagcgagggg 389
                ||||||||||||||| ||| ||||||||||||
Sbjct: 23147380 ggaggatggcggaggcggcggcgagcgagggg 23147349
to top
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 284     cttcgccgaggttgcccaggg 304
               |||||||||||||||||||||
Sbjct: 1091823 cttcgccgaggttgcccaggg 1091843
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 202      cctctgccgtcgccgccgtcg 222
                |||||||||||||||||||||
Sbjct: 23291483 cctctgccgtcgccgccgtcg 23291463
to top
>emb|AL590418.16| Mouse DNA sequence from clone RP23-206I14 on chromosome 2, complete
              sequence
          Length = 175045

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 352    tcctccgggaggatggcggaggggc 376
              |||||||||||| ||||||||||||
Sbjct: 169893 tcctccgggaggctggcggaggggc 169869
to top
>ref|XM_472176.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1887

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 ctgccgtcgccgccgtcgag 224
           ||||||||||||||||||||
Sbjct: 31  ctgccgtcgccgccgtcgag 50
to top
>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01,
             complete sequence
          Length = 146432

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 359   ggaggatggcggagg-ggccgcgagcgagggg 389
             ||||||||||||||| ||| ||||||||||||
Sbjct: 79155 ggaggatggcggaggcggcggcgagcgagggg 79124
to top
>ref|XM_420351.1| PREDICTED: Gallus gallus similar to ring finger protein 128
           (LOC422382), mRNA
          Length = 1318

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 420 gcggcggtggccgcgctgct 439
           ||||||||||||||||||||
Sbjct: 40  gcggcggtggccgcgctgct 59
to top
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 98      ccgtgcgaccgagctccgcc 117
               ||||||||||||||||||||
Sbjct: 2041340 ccgtgcgaccgagctccgcc 2041359
to top
>gb|AE007269.1| Sinorhizobium meliloti 1021 plasmid pSymA section 75 of 121 of the
            complete plasmid sequence
          Length = 8430

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  gccgaggcgttcctccggga 361
            ||||||||||||||||||||
Sbjct: 3179 gccgaggcgttcctccggga 3160
to top
>gb|AC165142.3| Mus musculus BAC clone RP24-484I1 from chromosome 7, complete sequence
          Length = 165049

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 421   cggcggtggccgcgctgctc 440
             ||||||||||||||||||||
Sbjct: 54350 cggcggtggccgcgctgctc 54369
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 418    ccgcggcggtggccgcgctg 437
              ||||||||||||||||||||
Sbjct: 368884 ccgcggcggtggccgcgctg 368903
to top
>ref|XM_762134.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_113_4136_3006)
           partial mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 320 ttacgccgacctcactgccg 339
           ||||||||||||||||||||
Sbjct: 976 ttacgccgacctcactgccg 957
to top
>gb|AY330485.1| Saccharopolyspora erythraea amino acid permease gene, partial cds;
            transport protein, helix-turn-helix regulator (pkeRI),
            P450 monooxygenase (pkePI), P450 monooxygenase (pkePII),
            P450 monooxygenase (pkePIII), type I PKS (pkeAI), type I
            PKS (pkeAII), and type I PKS (pkeAIII) genes, complete
            cds; pkeAIV gene, complete sequence; type I PKS,
            monooxygenases, transporter, ketoacyl-ACP synthase
            (typeII), acyl carrier protien, amino transferase, and
            DNA-binding protein genes, complete cds; and unknown
            genes
          Length = 68451

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   ggccacggccatggcggcga 75
            ||||||||||||||||||||
Sbjct: 2218 ggccacggccatggcggcga 2199
to top
>ref|NM_009109.1| Mus musculus ryanodine receptor 1, skeletal muscle (Ryr1), mRNA
          Length = 15358

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 421   cggcggtggccgcgctgctc 440
             ||||||||||||||||||||
Sbjct: 13116 cggcggtggccgcgctgctc 13135
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 415     tctccgcggcggtggccgcg 434
               ||||||||||||||||||||
Sbjct: 4719279 tctccgcggcggtggccgcg 4719260
to top
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     ccgtgcgaccgagctccgcc 117
              ||||||||||||||||||||
Sbjct: 202879 ccgtgcgaccgagctccgcc 202898
to top
>gb|AY044272.1| Pseudomonas sp. B13 3-oxoadipate:succinyl-CoA transferase subunit A
            (catI), 3-oxoadipate:succinyl-CoA transferase subunit B
            (catJ), 3-oxoadipyl-CoA thiolase (catF), and 3-oxoadipate
            enol-lactone hydrolase (catD) genes, complete cds; and
            unknown gene
          Length = 5888

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 55   cggccacggccatggcggcgaccaccgc 82
            |||||||||| | |||||||||||||||
Sbjct: 2146 cggccacggcgaaggcggcgaccaccgc 2173
to top
>gb|AY268935.1| Mus musculus ryanodine receptor (Ryr1) mRNA, complete cds
          Length = 15358

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 421   cggcggtggccgcgctgctc 440
             ||||||||||||||||||||
Sbjct: 13116 cggcggtggccgcgctgctc 13135
to top
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 98      ccgtgcgaccgagctccgcc 117
               ||||||||||||||||||||
Sbjct: 2122046 ccgtgcgaccgagctccgcc 2122027
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 344     cgaggcgttcctccgggagg 363
               ||||||||||||||||||||
Sbjct: 4698211 cgaggcgttcctccgggagg 4698192
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 429      gccgcgctgctcgcattcacgcag 452
                |||||||||||||| |||||||||
Sbjct: 28350179 gccgcgctgctcgccttcacgcag 28350156
to top
>dbj|AP003935.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0661G04
          Length = 157292

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 429   gccgcgctgctcgcattcacgcag 452
             |||||||||||||| |||||||||
Sbjct: 62757 gccgcgctgctcgccttcacgcag 62734
to top
>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0623A10
          Length = 156517

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 429    gccgcgctgctcgcattcacgcag 452
              |||||||||||||| |||||||||
Sbjct: 148208 gccgcgctgctcgccttcacgcag 148185
to top
>gb|AE005120.1| Halobacterium sp. NRC-1 section 151 of 170 of the complete genome
          Length = 10179

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  cgtcgccgccgtcgaggtcg 228
            ||||||||||||||||||||
Sbjct: 7401 cgtcgccgccgtcgaggtcg 7420
to top
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 209     cgtcgccgccgtcgaggtcg 228
               ||||||||||||||||||||
Sbjct: 2658652 cgtcgccgccgtcgaggtcg 2658633
to top
>dbj|AK066733.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074I15, full
           insert sequence
          Length = 3961

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                           
Query: 359 ggaggatggcggagg-ggccgcgagcgagggg 389
           ||||||||||||||| ||| ||||||||||||
Sbjct: 177 ggaggatggcggaggcggcggcgagcgagggg 146
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 48      tcgccaccggccacggccat 67
               ||||||||||||||||||||
Sbjct: 3074022 tcgccaccggccacggccat 3074003
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 344     cgaggcgttcctccgggagg 363
               ||||||||||||||||||||
Sbjct: 4698189 cgaggcgttcctccgggagg 4698170
to top
>emb|AL662979.3|OSJN00179 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0069D17,
             complete sequence
          Length = 147111

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   ctgccgtcgccgccgtcgag 224
             ||||||||||||||||||||
Sbjct: 49863 ctgccgtcgccgccgtcgag 49844
to top
>emb|AL713946.3|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005_B07 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 161762

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    cgaggcgttcctccgggagg 363
              ||||||||||||||||||||
Sbjct: 148923 cgaggcgttcctccgggagg 148942
to top
>emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa0063C08 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147355

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   cgaggcgttcctccgggagg 363
             ||||||||||||||||||||
Sbjct: 53916 cgaggcgttcctccgggagg 53935
to top
>gb|AC164564.3| Mus musculus BAC clone RP23-96N11 from chromosome 7, complete sequence
          Length = 247415

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    cggcggtggccgcgctgctc 440
              ||||||||||||||||||||
Sbjct: 238626 cggcggtggccgcgctgctc 238645


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,076,115
Number of Sequences: 3902068
Number of extensions: 3076115
Number of successful extensions: 161431
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 159038
Number of HSP's gapped (non-prelim): 2397
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top