Clone Name | bastl22c02 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | GLYA_ANAMM (Q5PBM8) Serine hydroxymethyltransferase (EC 2.1.2.1)... | 28 | 6.7 | 2 | S28A1_HUMAN (O00337) Sodium/nucleoside cotransporter 1 (Na(+)/nu... | 28 | 8.8 |
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>GLYA_ANAMM (Q5PBM8) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 430 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -3 Query: 225 LLANIANTETLALGSCFPRLPFLHTHICIS 136 LLA+IA+ L G C+P PF H H+ S Sbjct: 200 LLADIAHYSGLIAGGCYPS-PFGHAHVVTS 228
>S28A1_HUMAN (O00337) Sodium/nucleoside cotransporter 1 (Na(+)/nucleoside| cotransporter 1) (Sodium-coupled nucleoside transporter 1) (Concentrative nucleoside transporter 1) (CNT 1) (hCNT1) Length = 649 Score = 28.1 bits (61), Expect = 8.8 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 14/74 (18%) Frame = -3 Query: 240 VLSTLLLANIANTETLA-----LGSCFPR---------LPFLHTHICISLLPLQQRWCST 103 VL+T L AN ++ L S P+ L L T C+SL+ C Sbjct: 532 VLTTFALCGFANFSSIGIMLGGLTSMVPQRKSDFSQIVLRALFTGACVSLVNA----CMA 587 Query: 102 AVLYMERGVYISCL 61 +LYM RG + C+ Sbjct: 588 GILYMPRGAEVDCM 601 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,486,811 Number of Sequences: 219361 Number of extensions: 720574 Number of successful extensions: 1439 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1431 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1439 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)