ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl22b11 |
|---|---|
| Clone Library Name | barley_pub |
>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor| (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS MICROSPOROCYTES1 protein) Length = 1192 Score = 36.2 bits (82), Expect = 0.043 Identities = 21/68 (30%), Positives = 35/68 (51%) Frame = +1 Query: 262 ASDGVVIAQADLQGLQAIRQALVDPRGFLSGWNGTGLGACSGEWAGVKCARGKVVALQLP 441 +S +V ++ L + +++L +P LS WN + A +W GV C G+V +L LP Sbjct: 16 SSSAIVDLSSETTSLISFKRSLENP-SLLSSWNVSS-SASHCDWVGVTCLLGRVNSLSLP 73 Query: 442 FKGLAGAL 465 L G + Sbjct: 74 SLSLRGQI 81
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 34.3 bits (77), Expect = 0.16 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Frame = -3 Query: 464 SAPARPLNGSCSATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSAC 285 +AP A P A PA +P Q PRP P P PR + +A P A Sbjct: 95 AAPRPSAAPKAPAAQQPAAPSAPAPAPSQGPRPTP-GPKPAPRPAPAAPEFTAPPAAPAA 153 Query: 284 AIT-TPSDAWPRAGDA 240 T P+ + P+ G A Sbjct: 154 PSTPAPAPSGPKPGGA 169
>BEGIN_SHEEP (Q6R6L0) Brain-enriched guanylate kinase-associated protein| Length = 653 Score = 33.1 bits (74), Expect = 0.36 Identities = 22/61 (36%), Positives = 28/61 (45%) Frame = -3 Query: 368 PVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPRAGDAECSRRTSSDSASVTPLL 189 P P LR+ R S M SP A +P A+PRAG + SR+ S A + L Sbjct: 592 PEPELSLRSSRDSLEPSSMEASPEMHPGARLSPQPAFPRAGSSGLSRKDSLTKAQLYGTL 651 Query: 188 L 186 L Sbjct: 652 L 652
>EBNA6_EBV (P03204) Epstein-Barr nuclear antigen 6 (EBV nuclear antigen 6)| (EBNA-6) (EBNA-3C) (EBNA-4B) Length = 992 Score = 32.7 bits (73), Expect = 0.47 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 8/57 (14%) Frame = -3 Query: 464 SAPARPLNGSCSATTLPRAHLTPA-------HSPEQAPRPVPFHPLRNP-RGSTSAC 318 S P RP S+ T+ AH TP H P P+PVP P P R AC Sbjct: 447 STPERPGPSEQSSVTVEPAHPTPVEMPMVILHQPPPVPKPVPVKPTPPPSRRRRGAC 503
>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1282 Score = 32.3 bits (72), Expect = 0.62 Identities = 21/95 (22%), Positives = 39/95 (41%) Frame = -3 Query: 443 NGSCSATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD 264 N + TT + H P H + P+P P HP P ++ +P +A ++ PS Sbjct: 197 NDMVNVTTPGQVHQIPTHGIQPQPQPPPQHP-SQPSSQSAPTPAQPAPQPTAAKVSKPSQ 255 Query: 263 AWPRAGDAECSRRTSSDSASVTPLLLLHTPIVAIL 159 ++ + ++ +P + HTP+ L Sbjct: 256 LQAHTPASQQTPPLPPYASPRSPPVQPHTPVTISL 290
>TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)| Length = 367 Score = 32.0 bits (71), Expect = 0.81 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Frame = -3 Query: 458 PARPLNGSCSATTLPRAHLTPA---HSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSA 288 P L+ S S + P H P SP P P P S S+C + S C SA Sbjct: 225 PRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTP-PPPSSSASSCSSSASSCSSA 283 Query: 287 CAITTPSDA 261 A +TPS A Sbjct: 284 SAASTPSGA 292
>HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engrailed| Length = 596 Score = 31.6 bits (70), Expect = 1.1 Identities = 21/70 (30%), Positives = 31/70 (44%) Frame = -3 Query: 389 SPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPRAGDAECSRRTSSDS 210 SP+ AP P H ST+ MA + AC TT + + +G + S T + Sbjct: 8 SPQSAPSPPHHHHSSQSPTSTTTVTMATASPVPACTTTTTTTS--TSGASAASSPTRDEM 65 Query: 209 ASVTPLLLLH 180 + V P+ LH Sbjct: 66 SLVVPISPLH 75
>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response| factor 2) (ERF-2) Length = 492 Score = 31.6 bits (70), Expect = 1.1 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Frame = -3 Query: 458 PARPLNGSCSATTLPRAHLTPA---HSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSA 288 P L+ S S + P H P SP P P S S+C + S C SA Sbjct: 250 PRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSA 309 Query: 287 CAITTPSDA 261 A +TPS A Sbjct: 310 SAASTPSGA 318
>Y1786_VIBCH (Q9KR57) Putative radC-like protein VC1786| Length = 158 Score = 31.6 bits (70), Expect = 1.1 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -2 Query: 354 PAQEPPRVDQRLPDGLQPLQVRLRDHHAVGRLAAS 250 P+Q R+ QRL D L + +R+ DH VG+ + S Sbjct: 117 PSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVS 151
>5HT6R_RAT (P31388) 5-hydroxytryptamine 6 receptor (5-HT-6) (Serotonin| receptor 6) (ST-B17) Length = 436 Score = 31.2 bits (69), Expect = 1.4 Identities = 22/63 (34%), Positives = 24/63 (38%) Frame = -3 Query: 419 LPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPRAGDA 240 LP H P H P A P P PL SAC C I TP PRA + Sbjct: 335 LPCVHCPPEHRP--ALPPPPCGPLTAVPDQASACSRCCLCLCRQTQIQTPLQGAPRACSS 392 Query: 239 ECS 231 + S Sbjct: 393 QPS 395
>POLN_HEVBU (P29324) Non-structural polyprotein (EC 2.7.7.48) (RNA-directed RNA| polymerase/Helicase) Length = 1693 Score = 25.8 bits (55), Expect(2) = 2.3 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Frame = -3 Query: 464 SAPARPLNGSCSATTLPRAHLTP---AHSPEQAPRPVP 360 S+PARP G S ++P TP A P AP P P Sbjct: 712 SSPARPDLGFMSEPSIPSRAATPTLAAPLPPPAPDPSP 749 Score = 23.1 bits (48), Expect(2) = 2.3 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -1 Query: 253 EPATPSAAGGPAVTARA*HH 194 EPA+ + AG PA+T + H Sbjct: 758 EPASGATAGAPAITHQTARH 777
>TMPSD_HUMAN (Q9BYE2) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic| serine protease) (Membrane-type mosaic serine protease) Length = 581 Score = 30.4 bits (67), Expect = 2.3 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 3/104 (2%) Frame = -3 Query: 464 SAPARPLNGSCSATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMA---CSPCR 294 ++PA G S A +PA +P P P P G S R + SP R Sbjct: 24 ASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPGRASPAQASPAR 83 Query: 293 SACAITTPSDAWPRAGDAECSRRTSSDSASVTPLLLLHTPIVAI 162 ++ A+ + S + +G + +R S ++ L+ TP+ A+ Sbjct: 84 ASPALASLSRS--SSGRSSSARSASVTTSPTRVYLVRATPVGAV 125
>HXB13_MOUSE (P70321) Homeobox protein Hox-B13| Length = 286 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/76 (27%), Positives = 28/76 (36%) Frame = -3 Query: 449 PLNGSCSATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTP 270 PL+ SA + H P +P PVP+ S R + PC A+ T Sbjct: 51 PLDLPGSAEPPKQCHPCPGVPQGASPAPVPYGYFGGGYYSCRVSRSSLKPCAQTAALATY 110 Query: 269 SDAWPRAGDAECSRRT 222 P G+ SR T Sbjct: 111 PSETPAPGEEYPSRPT 126
>ENV_FLVC6 (P21443) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] Length = 668 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Frame = -3 Query: 440 GSCSATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD- 264 G C AT +P+ H + ++ R H L P G+ AC +PC S + SD Sbjct: 379 GLCIAT-VPKTHQALCNKTQKGHRGT--HYLVAPNGTYWACNTGLTPCISMAVLNWTSDF 435 Query: 263 -----AWPR 252 WPR Sbjct: 436 CVLTELWPR 444
>ENV_FSVSM (P21445) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] Length = 645 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Frame = -3 Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD------A 261 T+PR H + +Q H L P G+ AC +PC S + SD Sbjct: 367 TVPRTHQALCNKTQQGHTGA--HYLAAPNGTYWACNTGLTPCISMAVLNWTSDFCVLIEL 424 Query: 260 WPR 252 WPR Sbjct: 425 WPR 427
>CJ095_HUMAN (Q9H7T3) Protein C10orf95| Length = 257 Score = 30.0 bits (66), Expect = 3.1 Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 12/93 (12%) Frame = -3 Query: 461 APARPLNGSCSATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCR---- 294 A RP +G+ +A+T P H P A RP P P P ++ C R Sbjct: 96 ASGRP-HGNTTASTAPPRHPRPRRPGGPALRPTP-RPCAGPAPPPASRDCRCRRPRRWPR 153 Query: 293 --------SACAITTPSDAWPRAGDAECSRRTS 219 AC + AW G CS RTS Sbjct: 154 AGRRGRRAGACKPSCAGAAWSARGAPLCSYRTS 186
>SIN3A_HUMAN (Q96ST3) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1273 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/95 (21%), Positives = 37/95 (38%) Frame = -3 Query: 443 NGSCSATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD 264 N + TT + H P H + P+P P HP P ++ +P ++ PS Sbjct: 197 NDMVNVTTPGQVHQIPTHGIQPQPQPPPQHP-SQPSAQSAPAPAQPAPQPPPAKVSKPSQ 255 Query: 263 AWPRAGDAECSRRTSSDSASVTPLLLLHTPIVAIL 159 ++ + ++ +P + HTP+ L Sbjct: 256 LQAHTPASQQTPPLPPYASPRSPPVQPHTPVTISL 290
>E1A_ADE05 (P03255) Early E1A 32 kDa protein| Length = 289 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = -3 Query: 386 PEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPS 267 PE P P P P R P+ + + R SP C +T S Sbjct: 192 PEPEPEPEPARPTRRPKMAPAILRRPTSPVSRECNSSTDS 231
>POLN_HEVMY (Q04610) Non-structural polyprotein (EC 2.7.7.48) (RNA-directed RNA| polymerase/Helicase) Length = 1693 Score = 25.0 bits (53), Expect(2) = 3.7 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Frame = -3 Query: 464 SAPARPLNGSCSATTLPRAHLTPAHS---PEQAPRPVP 360 S+PARP G S ++P TP + P AP P P Sbjct: 712 SSPARPDLGLMSEPSIPSRAATPTLAVLLPPPAPDPPP 749 Score = 23.1 bits (48), Expect(2) = 3.7 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -1 Query: 253 EPATPSAAGGPAVTARA*HH 194 EPA+ + AG PA+T + H Sbjct: 758 EPASGATAGAPAITHQTARH 777
>HUNB_DROCY (O46238) Protein hunchback (Fragments)| Length = 198 Score = 29.6 bits (65), Expect = 4.0 Identities = 22/86 (25%), Positives = 39/86 (45%) Frame = -3 Query: 452 RPLNGSCSATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITT 273 +P++ C+A P +P+++ + +P P P NP S + PC +A TT Sbjct: 83 QPMDTLCAAAMTP----SPSNNDQNSPLMPPGLP--NPMQSIMPANLR--PCPTATTTTT 134 Query: 272 PSDAWPRAGDAECSRRTSSDSASVTP 195 P+ A P A + + ++TP Sbjct: 135 PAAAAPTTTAATIVLQANDKLQALTP 160
>HXB13_HUMAN (Q92826) Homeobox protein Hox-B13| Length = 284 Score = 29.6 bits (65), Expect = 4.0 Identities = 21/76 (27%), Positives = 28/76 (36%) Frame = -3 Query: 449 PLNGSCSATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTP 270 PL+ SA + H P +P PVP+ S R + PC A + Sbjct: 50 PLDLPGSAEPPKQCHPCPGVPQGTSPAPVPYGYFGGGYYSCRVSRSSLKPCAQAATLAAY 109 Query: 269 SDAWPRAGDAECSRRT 222 P AG+ SR T Sbjct: 110 PAETPTAGEEYPSRPT 125
>HIP_PARSP (P00264) High-potential iron-sulfur protein (HiPIP)| Length = 71 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +1 Query: 256 GQASDGVVIAQADLQGLQAIRQALVDPRGFLSGW 357 G+ D + QAD QG Q Q V+P G+ W Sbjct: 34 GEQCDNCMFFQADSQGCQLFPQNSVEPAGWCQSW 67
>ENV_FLVLB (P11261) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] (Fragment) Length = 662 Score = 29.6 bits (65), Expect = 4.0 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 6/69 (8%) Frame = -3 Query: 440 GSCSATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD- 264 GSC T +P+ H ++ + H L P G+ AC +PC S + SD Sbjct: 379 GSCIGT-VPKTHQALCKKTQKGHKGT--HYLAAPSGTYWACNTGLTPCISMAVLNWTSDF 435 Query: 263 -----AWPR 252 WPR Sbjct: 436 CVLIELWPR 444
>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1| precursor (EC 2.7.11.1) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) Length = 615 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Frame = +1 Query: 277 VIAQADLQGLQAIRQALVDPRGFLSGWNGTGLGACSGEWAGVKC-ARGKVVALQLPFKGL 453 V A+ L A++ +L DP L W+ T + C+ W V C + V + L L Sbjct: 23 VSGNAEGDALSALKNSLADPNKVLQSWDATLVTPCT--WFHVTCNSDNSVTRVDLGNANL 80 Query: 454 AGAL 465 +G L Sbjct: 81 SGQL 84
>PACC_YEAST (P33400) pH-response transcription factor pacC/RIM101 (pH-response| regulator protein RIM101) (Regulator of IME2 protein 1) Length = 625 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = -3 Query: 335 GSTSACRMACSPCRSACAITTPSDAWPRAGDAECSRRTSSDSASVTPLLLLHTP 174 GSTS+ +C P S + TP A + +SSDS+S +PL H P Sbjct: 78 GSTSS---SCLPYHSTSHLNTPPYDLLGASAVSPTTSSSSDSSSSSPLAQAHNP 128
>ENV_FLVGL (P08359) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] Length = 642 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Frame = -3 Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD------A 261 T+P+ H + +Q H L P G+ AC +PC S + SD Sbjct: 364 TVPKTHQALCNKTQQGHTGA--HYLAAPNGTYWACNTGLTPCISMAVLNWTSDFCVLIEL 421 Query: 260 WPR 252 WPR Sbjct: 422 WPR 424
>ENV_FLVCS (Q02077) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] (Fragment) Length = 436 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Frame = -3 Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD------A 261 T+P+ H + +Q H L P G+ AC +PC S + SD Sbjct: 334 TVPKTHQALCNKTQQGHTGA--HYLAAPNGTYWACNTGLTPCISMAVLNWTSDFCVLIEL 391 Query: 260 WPR 252 WPR Sbjct: 392 WPR 394
>HNRL1_MOUSE (Q8VDM6) Heterogeneous nuclear ribonucleoprotein U-like protein 1| Length = 859 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -3 Query: 416 PRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSA 288 P+ P P+Q P P + P RNP G++S + + P SA Sbjct: 701 PQQPPPPQPPPQQPPPPPSYSPARNPPGASSYNKNSNIPGSSA 743
>ENV_FSVGA (P03391) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E; R protein] Length = 662 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Frame = -3 Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD------A 261 T+P+ H + +Q H L P G+ AC +PC S + SD Sbjct: 384 TVPKTHQALCNETQQGHTGA--HYLAAPNGTYWACNTGLTPCISMAVLNWTSDFCVLIEL 441 Query: 260 WPR 252 WPR Sbjct: 442 WPR 444
>MTB_SALAL (P68502) Metallothionein B (MT-B)| Length = 60 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/45 (31%), Positives = 18/45 (40%) Frame = -3 Query: 344 NPRGSTSACRMACSPCRSACAITTPSDAWPRAGDAECSRRTSSDS 210 N GS AC+ C+ +C PSD A C +T S Sbjct: 13 NCGGSCKCSNCACTSCKKSCCPCCPSDCSKCASGCVCKGKTCDTS 57
>MTB_ONCMY (P68501) Metallothionein B (MT-B)| Length = 60 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/45 (31%), Positives = 18/45 (40%) Frame = -3 Query: 344 NPRGSTSACRMACSPCRSACAITTPSDAWPRAGDAECSRRTSSDS 210 N GS AC+ C+ +C PSD A C +T S Sbjct: 13 NCGGSCKCSNCACTSCKKSCCPCCPSDCSKCASGCVCKGKTCDTS 57
>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein) (PPAR-alpha-interacting complex protein 320 kDa) Length = 2885 Score = 29.3 bits (64), Expect = 5.2 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 9/96 (9%) Frame = -3 Query: 464 SAPARPLNGSCSATTLPRA---------HLTPAHSPEQAPRPVPFHPLRNPRGSTSACRM 312 S P P NG S T + + A + P P P + RGS S+ Sbjct: 2074 SEPVSPKNGVLSQATGDQKSGGKSETDRRMVAARTEPLTPNPASKKPRVHKRGSQSSSDS 2133 Query: 311 ACSPCRSACAITTPSDAWPRAGDAECSRRTSSDSAS 204 RS+C+ + S + + + CS S S+S Sbjct: 2134 DSDSARSSCSSRSSSSS---SSSSSCSHSRSGSSSS 2166
>JDP_DROME (Q9TVP3) J domain-containing protein (dJDP)| Length = 195 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = +1 Query: 283 AQADLQGLQAIRQALVDP--RGFLSGWNGTGLGACSGEWAGVKCARGKV 423 A+A Q L+ ++ L DP R W +G+ +W G+K G+V Sbjct: 55 AEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHVGQV 103
>ENV_FLVCA (Q02076) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] (Fragment) Length = 410 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Frame = -3 Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD------A 261 T+P+ H + +Q H L P G+ AC +PC S + SD Sbjct: 324 TVPKTHQALCNETQQGHTGA--HYLAAPNGTYWACNTGLTPCISMAVLNWTSDFCVLIEL 381 Query: 260 WPR 252 WPR Sbjct: 382 WPR 384
>PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) Length = 1636 Score = 29.3 bits (64), Expect = 5.2 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%) Frame = -3 Query: 464 SAPARPLNGSCSATTLPRAHLTPAHSPEQAPRPVPFHP--------LRNPRGSTSACRMA 309 +AP S + + P HL P+ +P P PVP P LR RG+ +A ++ Sbjct: 1064 AAPLTIRGPSSAGQSTPSPHLVPSPAPSPGPGPVPPRPPAAEPPPCLR--RGAAAADLLS 1121 Query: 308 CSP 300 SP Sbjct: 1122 SSP 1124
>ENV_MLVF5 (P03390) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E; R protein] Length = 675 Score = 28.9 bits (63), Expect = 6.8 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 15/68 (22%) Frame = -3 Query: 341 PRGSTSACRMACSPCRSACAITTPSD------AWPRA---------GDAECSRRTSSDSA 207 P G+T AC +PC SA + +D WPR E S R + Sbjct: 423 PTGTTWACNTGLTPCLSATVLNRTTDYCVLVELWPRVTYHPPSYVYSQFEKSYRHKREPV 482 Query: 206 SVTPLLLL 183 S+T LLL Sbjct: 483 SLTLALLL 490
>SYFA_CAUCR (Q9A9E4) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 357 Score = 28.9 bits (63), Expect = 6.8 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = +1 Query: 277 VIAQADLQGLQAIRQALVDPRGFLSGWNGTGLGACSGE-----WAGVKCARGKV 423 V A +DLQ L A+R A V G +SG T LGA S E A + R KV Sbjct: 15 VAAASDLQALDAVRVAAVGKTGSISGLLKT-LGAMSPEERKTQGAAINALRDKV 67
>PKNJ_MYCTU (P65732) Probable serine/threonine-protein kinase pknJ (EC| 2.7.11.1) Length = 589 Score = 28.9 bits (63), Expect = 6.8 Identities = 23/82 (28%), Positives = 31/82 (37%) Frame = -3 Query: 440 GSCSATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDA 261 GS +A P H P P P+P P R RG + + + A+T S Sbjct: 313 GSVTALATPPGHGWPPGLP-----PLPRRPRRYRRGVAAVAAVMVVAAAAVTAVTMTSHQ 367 Query: 260 WPRAGDAECSRRTSSDSASVTP 195 PR + S S+S TP Sbjct: 368 -PRTATPPSAAALSPTSSSTTP 388
>PKNJ_MYCBO (P65733) Probable serine/threonine-protein kinase pknJ (EC| 2.7.11.1) Length = 589 Score = 28.9 bits (63), Expect = 6.8 Identities = 23/82 (28%), Positives = 31/82 (37%) Frame = -3 Query: 440 GSCSATTLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSDA 261 GS +A P H P P P+P P R RG + + + A+T S Sbjct: 313 GSVTALATPPGHGWPPGLP-----PLPRRPRRYRRGVAAVAAVMVVAAAAVTAVTMTSHQ 367 Query: 260 WPRAGDAECSRRTSSDSASVTP 195 PR + S S+S TP Sbjct: 368 -PRTATPPSAAALSPTSSSTTP 388
>TF3C1_HUMAN (Q12789) General transcription factor 3C polypeptide 1 (Transcription| factor IIIC-alpha subunit) (TF3C-alpha) (TFIIIC 220 kDa subunit) (TFIIIC220) (TFIIIC box B-binding subunit) Length = 2109 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = -3 Query: 455 ARPLNGSCSATTLPRAHLTPAHSPEQAPR 369 ARPL GS S + P P+HSP R Sbjct: 1834 ARPLEGSSSEDSPPEGQAPPSHSPRGTKR 1862
>ENV_RMCFV (P06445) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP70; Coat protein p12E; Spike protein p15E] Length = 640 Score = 28.9 bits (63), Expect = 6.8 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 15/68 (22%) Frame = -3 Query: 341 PRGSTSACRMACSPCRSACAITTPSD------AWPRA---------GDAECSRRTSSDSA 207 P G+T AC +PC SA + +D WPR E S R + Sbjct: 387 PAGTTWACNTGLTPCLSATVLNRTTDYCVLVELWPRVTYHPPSYVYSQFEKSYRHKREPV 446 Query: 206 SVTPLLLL 183 S+T LLL Sbjct: 447 SLTLALLL 454
>GRLF1_HUMAN (Q9NRY4) Glucocorticoid receptor DNA-binding factor 1 (Glucocorticoid| receptor repression factor 1) (GRF-1) (Rho GAP p190A) (p190-A) Length = 1513 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = -3 Query: 455 ARPLNGSCSATTLPRAHLTPA---HSPEQAPRPVPFHPLR 345 ARP + S A+T+P TP SP Q+P P P P++ Sbjct: 1447 ARPSSPSAVASTVPFLTSTPVTSQPSPPQSPPPTPQSPMQ 1486
>ENV_MLVFF (P26804) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E; R protein] Length = 676 Score = 28.5 bits (62), Expect = 8.9 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 15/95 (15%) Frame = -3 Query: 422 TLPRAHLTPAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPSD------A 261 T+P+ H ++ +A + + L P G+ AC +PC SA + +D Sbjct: 398 TVPKTHQALCNTTLKAGKGSYY--LVAPTGTMWACNTGLTPCLSATVLNRTTDYCVLVEL 455 Query: 260 WPRA---------GDAECSRRTSSDSASVTPLLLL 183 WPR E S R + S+T LLL Sbjct: 456 WPRVTYHPPSYVYSQFEKSHRHKREPVSLTLALLL 490
>MDCB_PSEAE (Q9I6S9) Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A| synthase (EC 2.7.8.25) (2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase) Length = 293 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/48 (39%), Positives = 21/48 (43%) Frame = +3 Query: 87 ASRVALGLDPGASGGSGRAWLAVT*YGNNGCVEEQ*WCHARAVTAGPP 230 A R+AL DP A+ G YG G EE C RAV G P Sbjct: 139 AGRIALLDDPAAAIGDSHGERVRRRYGVGGAREEARLCFPRAVRHGLP 186
>KCNH2_CANFA (Q9TSZ3) Potassium voltage-gated channel subfamily H member 2| (Voltage-gated potassium channel subunit Kv11.1) (Ether-a-go-go-related gene potassium channel 1) (ERG1) (c-erg) (DERG) (Ether-a-go-go-related protein 1) (Eag-related protein 1) Length = 1158 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = -3 Query: 398 PAHSPEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACA 282 PA +PE P P H L NP S S+C +A + R +CA Sbjct: 241 PAGAPEPLPSPRA-HSL-NPDASGSSCSLARTRSRESCA 277
>HXB3_CHICK (P23682) Homeobox protein Hox-B3 (Chox-2.7)| Length = 399 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%) Frame = -3 Query: 461 APARPLNGSCSATTLPRAHLTPAHSPEQAPRPVPFHPLRN----PRGSTSACRMACSPCR 294 A ++ LNGSC +LP+ H P P +P P P + P GS R+ + + Sbjct: 60 AKSKDLNGSCMRPSLPQEHHPP---PTVSPPPNPTTNSTSSNSIPSGSAKVPRVKPTSVQ 116 Query: 293 SACAITTPSDAWPRAGDAECSRRTSSDS 210 + ++T W + +++SS S Sbjct: 117 TP-SLTKQIFPWMKESRQNSKQKSSSPS 143
>VSIG2_MOUSE (Q9Z109) V-set and immunoglobulin domain-containing protein 2| precursor (CT-like protein) (Cortical thymocyte-like protein) Length = 328 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = -3 Query: 362 PFHPLRNPRGSTSACRMACSPCRSACAITTPSDAWPRAGDA 240 P HPL + G TS A CRS+ P W R G + Sbjct: 146 PSHPLCSQSGQTSVGGSAALGCRSSEGAPKPVYNWERLGSS 186
>KCNH2_HUMAN (Q12809) Potassium voltage-gated channel subfamily H member 2| (Voltage-gated potassium channel subunit Kv11.1) (Ether-a-go-go related gene potassium channel 1) (H-ERG) (Erg1) (Ether-a-go-go related protein 1) (Eag-related protein 1) (eag homo Length = 1159 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Frame = -3 Query: 413 RAHLTPAHSPEQAPRPVPF---HPLRNPRGSTSACRMACSPCRSACA 282 RA + P P AP +P H L NP S S+C +A + R +CA Sbjct: 232 RALVGPGSPPRSAPGQLPSPRAHSL-NPDASGSSCSLARTRSRESCA 277
>TA29_TOBAC (P24804) Anther-specific protein TA-29| Length = 321 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +1 Query: 265 SDGVVIAQADLQGLQAIRQALVDPRGFLSGWNGTGLGACSGEWAG 399 SD + +AD L+A + +D +GF G G G+G G WAG Sbjct: 27 SDAIKAKEADHDNLKAHTLSNIDAKGF-GGGGGFGIG---GGWAG 67
>E1A_ADE02 (P03254) Early E1A 32 kDa protein| Length = 289 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = -3 Query: 386 PEQAPRPVPFHPLRNPRGSTSACRMACSPCRSACAITTPS 267 PE P P P P R P+ + R SP C +T S Sbjct: 192 PEPEPEPEPARPTRRPKLVPAILRRPTSPVSRECNSSTDS 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,542,498 Number of Sequences: 219361 Number of extensions: 889059 Number of successful extensions: 3534 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 3289 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3506 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
