Clone Name | bastl22b11 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 208 bits (105), Expect = 1e-50 Identities = 186/213 (87%) Strand = Plus / Plus Query: 254 gcggccaggcgtccgacggcgtggtgatcgcgcaggcggacctgcaggggctgcaggcca 313 |||| ||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| | Sbjct: 10409718 gcgggcagccgtcggacggcgtggtgatcgcgcaggccgacctgcagggtttgcaggcga 10409777 Query: 314 tccggcaggcgctggtcgacccgcgggggttcctgagcgggtggaacggcacgggcctcg 373 ||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||| |||| Sbjct: 10409778 tccggcaagcgctggttgacccgcgcgggttcctgcgcgggtggaacggcacggggctcg 10409837 Query: 374 gcgcctgctccggggagtgggccggcgtcaagtgcgcgcgcggcaaggtcgtcgcgctgc 433 ||| |||||||| | ||||||||| |||||||||||| || ||||| ||||| | | Sbjct: 10409838 acgcgtgctccggcgggtgggccgggatcaagtgcgcgcaggggaaggtggtcgccatcc 10409897 Query: 434 agctgccgttcaagggcctcgccggcgcgctct 466 |||| || ||||||||||||||||||||||||| Sbjct: 10409898 agctccccttcaagggcctcgccggcgcgctct 10409930 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 tagctagctagcgagctaggtacg 61 |||||||||||| ||||||||||| Sbjct: 12993753 tagctagctagctagctaggtacg 12993730 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 cctagctagctagcgagcta 55 |||||||||||||||||||| Sbjct: 10681683 cctagctagctagcgagcta 10681664
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 208 bits (105), Expect = 1e-50 Identities = 186/213 (87%) Strand = Plus / Plus Query: 254 gcggccaggcgtccgacggcgtggtgatcgcgcaggcggacctgcaggggctgcaggcca 313 |||| ||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| | Sbjct: 66271 gcgggcagccgtcggacggcgtggtgatcgcgcaggccgacctgcagggtttgcaggcga 66330 Query: 314 tccggcaggcgctggtcgacccgcgggggttcctgagcgggtggaacggcacgggcctcg 373 ||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||| |||| Sbjct: 66331 tccggcaagcgctggttgacccgcgcgggttcctgcgcgggtggaacggcacggggctcg 66390 Query: 374 gcgcctgctccggggagtgggccggcgtcaagtgcgcgcgcggcaaggtcgtcgcgctgc 433 ||| |||||||| | ||||||||| |||||||||||| || ||||| ||||| | | Sbjct: 66391 acgcgtgctccggcgggtgggccgggatcaagtgcgcgcaggggaaggtggtcgccatcc 66450 Query: 434 agctgccgttcaagggcctcgccggcgcgctct 466 |||| || ||||||||||||||||||||||||| Sbjct: 66451 agctccccttcaagggcctcgccggcgcgctct 66483
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03, from chromosome 3, complete sequence Length = 125800 Score = 208 bits (105), Expect = 1e-50 Identities = 186/213 (87%) Strand = Plus / Plus Query: 254 gcggccaggcgtccgacggcgtggtgatcgcgcaggcggacctgcaggggctgcaggcca 313 |||| ||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| | Sbjct: 123184 gcgggcagccgtcggacggcgtggtgatcgcgcaggccgacctgcagggtttgcaggcga 123243 Query: 314 tccggcaggcgctggtcgacccgcgggggttcctgagcgggtggaacggcacgggcctcg 373 ||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||| |||| Sbjct: 123244 tccggcaagcgctggttgacccgcgcgggttcctgcgcgggtggaacggcacggggctcg 123303 Query: 374 gcgcctgctccggggagtgggccggcgtcaagtgcgcgcgcggcaaggtcgtcgcgctgc 433 ||| |||||||| | ||||||||| |||||||||||| || ||||| ||||| | | Sbjct: 123304 acgcgtgctccggcgggtgggccgggatcaagtgcgcgcaggggaaggtggtcgccatcc 123363 Query: 434 agctgccgttcaagggcctcgccggcgcgctct 466 |||| || ||||||||||||||||||||||||| Sbjct: 123364 agctccccttcaagggcctcgccggcgcgctct 123396
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 208 bits (105), Expect = 1e-50 Identities = 186/213 (87%) Strand = Plus / Plus Query: 254 gcggccaggcgtccgacggcgtggtgatcgcgcaggcggacctgcaggggctgcaggcca 313 |||| ||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| | Sbjct: 10407819 gcgggcagccgtcggacggcgtggtgatcgcgcaggccgacctgcagggtttgcaggcga 10407878 Query: 314 tccggcaggcgctggtcgacccgcgggggttcctgagcgggtggaacggcacgggcctcg 373 ||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||| |||| Sbjct: 10407879 tccggcaagcgctggttgacccgcgcgggttcctgcgcgggtggaacggcacggggctcg 10407938 Query: 374 gcgcctgctccggggagtgggccggcgtcaagtgcgcgcgcggcaaggtcgtcgcgctgc 433 ||| |||||||| | ||||||||| |||||||||||| || ||||| ||||| | | Sbjct: 10407939 acgcgtgctccggcgggtgggccgggatcaagtgcgcgcaggggaaggtggtcgccatcc 10407998 Query: 434 agctgccgttcaagggcctcgccggcgcgctct 466 |||| || ||||||||||||||||||||||||| Sbjct: 10407999 agctccccttcaagggcctcgccggcgcgctct 10408031 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 tagctagctagcgagctaggtacg 61 |||||||||||| ||||||||||| Sbjct: 12990528 tagctagctagctagctaggtacg 12990505 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 cctagctagctagcgagcta 55 |||||||||||||||||||| Sbjct: 10679784 cctagctagctagcgagcta 10679765
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 355 tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcgcgcgc 414 ||||||| ||| |||||||||||||||||||| | |||| |||| ||||||||| | Sbjct: 417544 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcgtccag 417603 Query: 415 ggcaaggtcgtcgc 428 |||||||||||||| Sbjct: 417604 ggcaaggtcgtcgc 417617
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 355 tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcgcgcgc 414 ||||||| ||| |||||||||||||||||||| | |||| |||| ||||||||| | Sbjct: 358583 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcgtccag 358642 Query: 415 ggcaaggtcgtcgc 428 |||||||||||||| Sbjct: 358643 ggcaaggtcgtcgc 358656
>dbj|AK109643.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-G09, full insert sequence Length = 1938 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 355 tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcgcgcgc 414 ||||||| ||| |||||||||||||||||||| | |||| |||| ||||||||| | Sbjct: 270 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcgtccag 329 Query: 415 ggcaaggtcgtcgc 428 |||||||||||||| Sbjct: 330 ggcaaggtcgtcgc 343
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 355 tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcgcgcgc 414 ||||||| ||| |||||||||||||||||||| | |||| |||| ||||||||| | Sbjct: 358583 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcgtccag 358642 Query: 415 ggcaaggtcgtcgc 428 |||||||||||||| Sbjct: 358643 ggcaaggtcgtcgc 358656
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 355 tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcgcgcgc 414 ||||||| ||| |||||||||||||||||||| | |||| |||| ||||||||| | Sbjct: 417544 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcgtccag 417603 Query: 415 ggcaaggtcgtcgc 428 |||||||||||||| Sbjct: 417604 ggcaaggtcgtcgc 417617
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 355 tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcgcgcgc 414 ||||||| ||| |||||||||||||||||||| | |||| |||| ||||||||| | Sbjct: 150595 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcgtccag 150654 Query: 415 ggcaaggtcgtcgc 428 |||||||||||||| Sbjct: 150655 ggcaaggtcgtcgc 150668
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 355 tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcgcgcgc 414 ||||||| ||| |||||||||||||||||||| | |||| |||| ||||||||| | Sbjct: 65901 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcgtccag 65960 Query: 415 ggcaaggtcgtcgc 428 |||||||||||||| Sbjct: 65961 ggcaaggtcgtcgc 65974
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 355 tggaacggcacgggcctcggcgcctgctccggggagtgggccggcgtcaagtgcgcgcgc 414 ||||||| ||| |||||||||||||||||||| | |||| |||| ||||||||| | Sbjct: 129228 tggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcgtccag 129169 Query: 415 ggcaaggtcgtcgc 428 |||||||||||||| Sbjct: 129168 ggcaaggtcgtcgc 129155
>ref|XM_479533.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1261 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 ctcggcgtcgccggctcgcggccag 261 ||||||||||||||| ||||||||| Sbjct: 620 ctcggcgtcgccggcgcgcggccag 644
>ref|NM_004418.2| Homo sapiens dual specificity phosphatase 2 (DUSP2), mRNA Length = 1702 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 gacctgcaggggctgcaggcc 312 ||||||||||||||||||||| Sbjct: 653 gacctgcaggggctgcaggcc 673
>gb|BC007771.2| Homo sapiens dual specificity phosphatase 2, mRNA (cDNA clone MGC:12703 IMAGE:4297852), complete cds Length = 1684 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 gacctgcaggggctgcaggcc 312 ||||||||||||||||||||| Sbjct: 630 gacctgcaggggctgcaggcc 650
>gb|AF331843.1| Homo sapiens phosphatase mRNA, complete cds Length = 1461 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 gacctgcaggggctgcaggcc 312 ||||||||||||||||||||| Sbjct: 298 gacctgcaggggctgcaggcc 318
>emb|CR614078.1| full-length cDNA clone CS0DK002YI03 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1638 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 gacctgcaggggctgcaggcc 312 ||||||||||||||||||||| Sbjct: 639 gacctgcaggggctgcaggcc 659
>emb|CR613393.1| full-length cDNA clone CS0DN003YD17 of Adult brain of Homo sapiens (human) Length = 1628 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 gacctgcaggggctgcaggcc 312 ||||||||||||||||||||| Sbjct: 641 gacctgcaggggctgcaggcc 661
>emb|CR609480.1| full-length cDNA clone CS0DK008YG09 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1523 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 gacctgcaggggctgcaggcc 312 ||||||||||||||||||||| Sbjct: 627 gacctgcaggggctgcaggcc 647
>dbj|AK133917.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730522K16 product:hypothetical protein, full insert sequence Length = 2507 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 332 acccgcgggggttcctgagcgggtggaac 360 ||||||||||||||| ||||||| ||||| Sbjct: 1382 acccgcgggggttccggagcgggaggaac 1410
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 ctcggcgtcgccggctcgcggccag 261 ||||||||||||||| ||||||||| Sbjct: 28706502 ctcggcgtcgccggcgcgcggccag 28706526
>gb|AC012307.8| Homo sapiens BAC clone RP11-574O17 from 2, complete sequence Length = 145918 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 gacctgcaggggctgcaggcc 312 ||||||||||||||||||||| Sbjct: 22655 gacctgcaggggctgcaggcc 22635
>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1205_F02 Length = 112862 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 ctcggcgtcgccggctcgcggccag 261 ||||||||||||||| ||||||||| Sbjct: 14063 ctcggcgtcgccggcgcgcggccag 14087
>dbj|AK106500.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E10, full insert sequence Length = 1261 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 ctcggcgtcgccggctcgcggccag 261 ||||||||||||||| ||||||||| Sbjct: 620 ctcggcgtcgccggcgcgcggccag 644
>dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1409_C08 Length = 90673 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 ctcggcgtcgccggctcgcggccag 261 ||||||||||||||| ||||||||| Sbjct: 81672 ctcggcgtcgccggcgcgcggccag 81696
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 359 acggcacgggcctcggcgcct 379 ||||||||||||||||||||| Sbjct: 1790565 acggcacgggcctcggcgcct 1790545
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 tcacgctcgcgctgtcactgctggt 224 |||||||||||||||| |||||||| Sbjct: 681667 tcacgctcgcgctgtcgctgctggt 681691
>gb|U23853.1|HSU23853 Human dual-specific phosphoprotein phosphatase (PAC1) gene, complete cds Length = 2296 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 gacctgcaggggctgcaggcc 312 ||||||||||||||||||||| Sbjct: 1124 gacctgcaggggctgcaggcc 1144
>gb|L11329.1|HUMPAC1 Homo sapiens protein tyrosine phosphatase (PAC-1) mRNA, complete cds Length = 1709 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 gacctgcaggggctgcaggcc 312 ||||||||||||||||||||| Sbjct: 653 gacctgcaggggctgcaggcc 673
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 atccggcaggcgctggtcga 332 |||||||||||||||||||| Sbjct: 2475584 atccggcaggcgctggtcga 2475565
>ref|XM_482638.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2671 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 310 gccatccggcaggcgctggtcgacccgc 337 |||||| |||||| |||||||||||||| Sbjct: 231 gccatcaggcaggggctggtcgacccgc 258
>ref|XM_482637.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2158 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 310 gccatccggcaggcgctggtcgacccgc 337 |||||| |||||| |||||||||||||| Sbjct: 137 gccatcaggcaggggctggtcgacccgc 164
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tcgcgcaggcggacctgcag 300 |||||||||||||||||||| Sbjct: 472905 tcgcgcaggcggacctgcag 472924
>gb|AC132483.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0014C03, complete sequence Length = 143739 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 ggtcgtcgcgctgcagctgc 439 |||||||||||||||||||| Sbjct: 133215 ggtcgtcgcgctgcagctgc 133196
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gcgcgcggcaaggtcgtcgc 428 |||||||||||||||||||| Sbjct: 1326465 gcgcgcggcaaggtcgtcgc 1326484
>ref|XR_004221.1| PREDICTED: Mus musculus similar to rRNA promoter binding protein (LOC673388), mRNA Length = 1051 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 333 cccgcgggggttcctgagcgggtggaac 360 |||||||||||||| ||||||| ||||| Sbjct: 745 cccgcgggggttccggagcgggaggaac 718
>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21, complete sequence Length = 151267 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 ggtcgtcgcgctgcagctgc 439 |||||||||||||||||||| Sbjct: 42470 ggtcgtcgcgctgcagctgc 42451
>gb|AC131792.4| Mus musculus BAC clone RP24-468O15 from chromosome 19, complete sequence Length = 162238 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 aatgggtgtgtggaggagca 190 |||||||||||||||||||| Sbjct: 107392 aatgggtgtgtggaggagca 107411
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence Length = 187621 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 cctagctagctagcgagcta 55 |||||||||||||||||||| Sbjct: 98597 cctagctagctagcgagcta 98578
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ggccatccggcaggcgctgg 328 |||||||||||||||||||| Sbjct: 4837285 ggccatccggcaggcgctgg 4837266
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 405 gtgcgcgcgcggcaaggtcgtcgcgctg 432 |||||||| ||||||| ||||||||||| Sbjct: 873509 gtgcgcgcccggcaagatcgtcgcgctg 873536
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 ggctgcaggccatccggcag 321 |||||||||||||||||||| Sbjct: 2569695 ggctgcaggccatccggcag 2569714
>emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genome; segment 3/16 Length = 349260 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ccgacggcgtggtgatcgcg 285 |||||||||||||||||||| Sbjct: 242357 ccgacggcgtggtgatcgcg 242376
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 gacctgcaggggctgcaggc 311 |||||||||||||||||||| Sbjct: 91651 gacctgcaggggctgcaggc 91632
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gcgcgcggcaaggtcgtcgc 428 |||||||||||||||||||| Sbjct: 2643871 gcgcgcggcaaggtcgtcgc 2643890
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 cgacggcgtggtgatcgcgc 286 |||||||||||||||||||| Sbjct: 127313 cgacggcgtggtgatcgcgc 127294
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cactgctggtcctcctgctg 234 |||||||||||||||||||| Sbjct: 186930 cactgctggtcctcctgctg 186911
>emb|AJ428208.1|MMU428208 Mus musculus mRNA for phosphacan short isoform (RPTP-beta gene) Length = 3784 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 333 cccgcgggggttcctgagcgggtggaac 360 |||||||||||||| ||||||| ||||| Sbjct: 2403 cccgcgggggttccggagcgggaggaac 2376
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ggcaggcgctggtcgacccg 336 |||||||||||||||||||| Sbjct: 5457713 ggcaggcgctggtcgacccg 5457694 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ccgacggcgtggtgatcgcg 285 |||||||||||||||||||| Sbjct: 5376784 ccgacggcgtggtgatcgcg 5376803
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 ttcctgagcgggtggaacgg 362 |||||||||||||||||||| Sbjct: 3011176 ttcctgagcgggtggaacgg 3011157
>gb|AF474141.1| Oryza sativa typical A-type R2R3 Myb protein gene, complete cds Length = 9589 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 cctagctagctagcgagcta 55 |||||||||||||||||||| Sbjct: 4193 cctagctagctagcgagcta 4212
>dbj|AK154459.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630036A16 product:hypothetical protein, full insert sequence Length = 4754 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 333 cccgcgggggttcctgagcgggtggaac 360 |||||||||||||| ||||||| ||||| Sbjct: 1142 cccgcgggggttccggagcgggaggaac 1169
>gb|U77931.1|RNU77931 Rattus norvegicus rRNA promoter binding protein mRNA, complete cds Length = 1038 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 333 cccgcgggggttcctgagcgggtggaac 360 |||||||||||||| ||||||| ||||| Sbjct: 362 cccgcgggggttccggagcgggaggaac 335
>gb|DQ248949.1| Taihangia rupestris TrSHP MADS-box protein mRNA, complete cds Length = 958 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 ctagctagctagcgagctaggtac 60 ||||||||||||| |||||||||| Sbjct: 820 ctagctagctagctagctaggtac 843
>tpg|BK000964.1| TPA: TPA_exp: Mus musculus ribosomal DNA, complete repeating unit Length = 45309 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 333 cccgcgggggttcctgagcgggtggaac 360 |||||||||||||| ||||||| ||||| Sbjct: 11020 cccgcgggggttccggagcgggaggaac 11047
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 gcgcgcggcaaggtcgtcgc 428 |||||||||||||||||||| Sbjct: 116347 gcgcgcggcaaggtcgtcgc 116328
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 310 gccatccggcaggcgctggtcgacccgc 337 |||||| |||||| |||||||||||||| Sbjct: 21576046 gccatcaggcaggggctggtcgacccgc 21576019
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 ggtcgtcgcgctgcagctgc 439 |||||||||||||||||||| Sbjct: 19120572 ggtcgtcgcgctgcagctgc 19120553
>gb|AC092535.4| Homo sapiens BAC clone RP11-20I20 from 4, complete sequence Length = 190462 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cctgcaggggctgcaggcca 313 |||||||||||||||||||| Sbjct: 6693 cctgcaggggctgcaggcca 6712
>ref|NM_147136.1| Rattus norvegicus rRNA promoter binding protein (LOC257642), mRNA Length = 1038 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 333 cccgcgggggttcctgagcgggtggaac 360 |||||||||||||| ||||||| ||||| Sbjct: 362 cccgcgggggttccggagcgggaggaac 335
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11, complete sequence Length = 176637 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 tagctagctagcgagctaggtacg 61 |||||||||||| ||||||||||| Sbjct: 71451 tagctagctagctagctaggtacg 71428
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 266 ccgacggcgtggtgatcgcgcagg 289 |||||||||||||||| ||||||| Sbjct: 7224182 ccgacggcgtggtgatggcgcagg 7224159
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 agtgcgcgcgcggcaaggtc 423 |||||||||||||||||||| Sbjct: 5591168 agtgcgcgcgcggcaaggtc 5591187
>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0708B04 Length = 170523 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 310 gccatccggcaggcgctggtcgacccgc 337 |||||| |||||| |||||||||||||| Sbjct: 36220 gccatcaggcaggggctggtcgacccgc 36193
>dbj|AB114630.1| Mus musculus CNR gene for cadherin-related neuronal receptor, complete cds Length = 10521 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 333 cccgcgggggttcctgagcgggtggaac 360 |||||||||||||| ||||||| ||||| Sbjct: 9289 cccgcgggggttccggagcgggaggaac 9316
>dbj|AK111984.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-F05, full insert sequence Length = 2158 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 310 gccatccggcaggcgctggtcgacccgc 337 |||||| |||||| |||||||||||||| Sbjct: 137 gccatcaggcaggggctggtcgacccgc 164
>dbj|AK111772.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067P10, full insert sequence Length = 2671 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 310 gccatccggcaggcgctggtcgacccgc 337 |||||| |||||| |||||||||||||| Sbjct: 231 gccatcaggcaggggctggtcgacccgc 258
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 gcgcgcggcaaggtcgtcgc 428 |||||||||||||||||||| Sbjct: 501865 gcgcgcggcaaggtcgtcgc 501846
>emb|X82564.1|MM45SRRNA M.musculus 45S pre rRNA gene Length = 22118 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 333 cccgcgggggttcctgagcgggtggaac 360 |||||||||||||| ||||||| ||||| Sbjct: 16655 cccgcgggggttccggagcgggaggaac 16682
>gb|AC148014.3| Mus musculus BAC clone RP23-118N15 from 19, complete sequence Length = 222061 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 aatgggtgtgtggaggagca 190 |||||||||||||||||||| Sbjct: 148033 aatgggtgtgtggaggagca 148014
>emb|X00525.1|MMRNA02 Mouse 28S ribosomal RNA Length = 4712 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 333 cccgcgggggttcctgagcgggtggaac 360 |||||||||||||| ||||||| ||||| Sbjct: 2897 cccgcgggggttccggagcgggaggaac 2924 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,743,067 Number of Sequences: 3902068 Number of extensions: 2743067 Number of successful extensions: 68924 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66955 Number of HSP's gapped (non-prelim): 1969 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)