ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl22b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TLX2_MOUSE (Q61663) T-cell leukemia homeobox protein 2 (Homeobox... 29 3.7
2PTPA1_ASPOR (Q2UN27) Serine/threonine-protein phosphatase 2A act... 28 6.4

>TLX2_MOUSE (Q61663) T-cell leukemia homeobox protein 2 (Homeobox protein|
           Hox-11L1) (Homeobox TLX-2) (PMUR10F)
          Length = 284

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = +2

Query: 191 SGPDSPPSGGC------LVYGRGVAASAGFEGASDRAPA 289
           SGP+ PP GG         +G   A S+GF GAS  APA
Sbjct: 26  SGPE-PPGGGLGPGQSGQSHGESAAFSSGFHGASGYAPA 63



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>PTPA1_ASPOR (Q2UN27) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 478

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 189 SLGP-TRPRRAVASSTGEGSRPRRASRERATELRRPWSTSTSAPW 320
           S GP TRPR+   S+  +     +A    A++   P ST T+APW
Sbjct: 372 SSGPETRPRQVPPSARQDPGPGTKAPWATASQSTPPPSTGTAAPW 416


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.132    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,869,862
Number of Sequences: 219361
Number of extensions: 427462
Number of successful extensions: 1662
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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