ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl22b06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 114 cgccgatcgtcccgcccccgcc 135 |||||||||||||||||||||| Sbjct: 615772 cgccgatcgtcccgcccccgcc 615751
>gb|BT009201.1| Triticum aestivum clone wle1n.pk0009.e6:fis, full insert mRNA sequence Length = 1334 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 267 gagcgagcgaccgagctccggc 288 |||||||||||||||||||||| Sbjct: 1124 gagcgagcgaccgagctccggc 1145
>gb|AY206771.1| Chlamydomonas reinhardtii flagella membrane glycoprotein 1A gene, complete cds Length = 24232 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 98 ccctcccctccgccctcgccga 119 |||||||||||||||||||||| Sbjct: 2751 ccctcccctccgccctcgccga 2772
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 64 cctcgccgccggcgcgcccgcc 85 |||||||||||||||||||||| Sbjct: 4641080 cctcgccgccggcgcgcccgcc 4641059
>ref|XM_469940.1| Oryza sativa (japonica cultivar-group), mRNA Length = 519 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tcgccgccggcgcgcccgccc 86 ||||||||||||||||||||| Sbjct: 377 tcgccgccggcgcgcccgccc 397
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tcgccgccggcgcgcccgccc 86 ||||||||||||||||||||| Sbjct: 140588 tcgccgccggcgcgcccgccc 140608
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 tcgccgccggcgcgcccgccc 86 ||||||||||||||||||||| Sbjct: 32603319 tcgccgccggcgcgcccgccc 32603299 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 ccccctcccctccgccctcgccga 119 ||||| |||||||||||||||||| Sbjct: 25571529 cccccccccctccgccctcgccga 25571552
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tcgccgccggcgcgcccgccc 86 ||||||||||||||||||||| Sbjct: 223325 tcgccgccggcgcgcccgccc 223345
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 tcgccgccggcgcgcccgccc 86 ||||||||||||||||||||| Sbjct: 161049 tcgccgccggcgcgcccgccc 161069
>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12 Length = 349028 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 tcgccgccggcgcgcccgccc 86 ||||||||||||||||||||| Sbjct: 194237 tcgccgccggcgcgcccgccc 194217
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 341 catgcggctgcggcggcggccaacc 365 ||||| ||||||||||||||||||| Sbjct: 27494199 catgctgctgcggcggcggccaacc 27494175 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 342 atgcggctgcggcggcggccaacc 365 ||||||| |||||||||||||||| Sbjct: 4544814 atgcggcggcggcggcggccaacc 4544791
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 tcgccgccggcgcgcccgccc 86 ||||||||||||||||||||| Sbjct: 32693829 tcgccgccggcgcgcccgccc 32693809 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 ccccctcccctccgccctcgccga 119 ||||| |||||||||||||||||| Sbjct: 25662838 cccccccccctccgccctcgccga 25662861
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 62 cccctcgccgccggcgcgcccgccc 86 |||||||||| |||||||||||||| Sbjct: 9377115 cccctcgccggcggcgcgcccgccc 9377091 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 gcttcggttccgccgtcgcc 188 |||||||||||||||||||| Sbjct: 25582668 gcttcggttccgccgtcgcc 25582649
>dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0693B08 Length = 140812 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 62 cccctcgccgccggcgcgcccgccc 86 |||||||||| |||||||||||||| Sbjct: 47442 cccctcgccggcggcgcgcccgccc 47418
>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0544G09 Length = 137481 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 341 catgcggctgcggcggcggccaacc 365 ||||| ||||||||||||||||||| Sbjct: 120994 catgctgctgcggcggcggccaacc 120970
>dbj|AP006265.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1112_E06 Length = 95069 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 341 catgcggctgcggcggcggccaacc 365 ||||| ||||||||||||||||||| Sbjct: 57448 catgctgctgcggcggcggccaacc 57424
>dbj|AK073797.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067G11, full insert sequence Length = 2453 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 62 cccctcgccgccggcgcgcccgccc 86 |||||||||| |||||||||||||| Sbjct: 67 cccctcgccggcggcgcgcccgccc 91
>gb|U81968.1|RSU81968 Rhodovulum sulfidophilum nucleoside-diphosphate-kinase (ndk), peripheral light harvesting complex subunits beta (pucB) and alpha precursor (pucA), and putative regulatory protein PucC (pucC) genes, complete cds Length = 4837 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 ggtcgcggcctcggcgggctt 261 ||||||||||||||||||||| Sbjct: 4474 ggtcgcggcctcggcgggctt 4454
>ref|XM_469118.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2739 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 ccccctcccctccgccctcgccga 119 ||||| |||||||||||||||||| Sbjct: 266 cccccccccctccgccctcgccga 243
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 cgccgccggcgcgcccgccc 86 |||||||||||||||||||| Sbjct: 2446139 cgccgccggcgcgcccgccc 2446158
>ref|NM_192241.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 855 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gcttcggttccgccgtcgcc 188 |||||||||||||||||||| Sbjct: 149 gcttcggttccgccgtcgcc 168
>ref|XM_365446.1| Magnaporthe grisea 70-15 hypothetical protein (MG02148.4) partial mRNA Length = 2160 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gaccatgcggctgcggcggc 357 |||||||||||||||||||| Sbjct: 1695 gaccatgcggctgcggcggc 1676
>ref|XM_368222.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG01022.4) partial mRNA Length = 1215 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 348 ctgcggcggcggccaacccggacc 371 |||||||||||||||| ||||||| Sbjct: 655 ctgcggcggcggccaagccggacc 632
>ref|XM_582187.2| PREDICTED: Bos taurus similar to zinc finger protein 641 (LOC538714), mRNA Length = 2068 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cccctcccctccgccctcgc 116 |||||||||||||||||||| Sbjct: 702 cccctcccctccgccctcgc 683
>ref|XM_984402.1| PREDICTED: Mus musculus hypothetical protein LOC666530 (LOC666530), mRNA Length = 810 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 cgccgccggcgcgcccgccc 86 |||||||||||||||||||| Sbjct: 298 cgccgccggcgcgcccgccc 279
>gb|AC139174.3| Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence Length = 167427 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 ccccctcccctccgccctcgccga 119 ||||| |||||||||||||||||| Sbjct: 130822 cccccccccctccgccctcgccga 130799
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 ggcgcttcggttccgccgtc 185 |||||||||||||||||||| Sbjct: 3651514 ggcgcttcggttccgccgtc 3651495
>emb|Z36753.1|CET09A5 Caenorhabditis elegans Cosmid T09A5, complete sequence Length = 38700 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tcttccctttttccgctaat 37 |||||||||||||||||||| Sbjct: 10082 tcttccctttttccgctaat 10101
>gb|AC018635.10| Homo sapiens chromosome 7 clone RP11-62J1, complete sequence Length = 163547 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 353 gcggcggccaacccggacccgtcc 376 |||||||||||||||| ||||||| Sbjct: 129847 gcggcggccaacccggccccgtcc 129824
>emb|AJ224684.1|BJAJ4684 Bradyrhizobium japonicum cooxS, cooxM genes & ORFs 6,7,8 & 9 Length = 6325 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 cctcgatctccgccggcgcc 394 |||||||||||||||||||| Sbjct: 791 cctcgatctccgccggcgcc 810
>gb|AC023742.4| Drosophila melanogaster X BAC RP98-43C24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172203 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 336 ccgaccatgcggctgcggcggcggccaa 363 |||| ||||| ||||||||||||||||| Sbjct: 136027 ccgaacatgcagctgcggcggcggccaa 136054
>emb|CR603273.1| full-length cDNA clone CS0DC013YI11 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1789 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 353 gcggcggccaacccggacccgtcc 376 |||||||||||||||| ||||||| Sbjct: 685 gcggcggccaacccggccccgtcc 708
>gb|DQ429836.1| Sorghum propinquum locus pSB1418 genomic sequence Length = 428 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 atgcggctgcggcggcggccaacc 365 |||| ||||||||||||||||||| Sbjct: 400 atgctgctgcggcggcggccaacc 423
>gb|DQ429835.1| Sorghum bicolor voucher PI267539 locus pSB1418 genomic sequence Length = 428 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 atgcggctgcggcggcggccaacc 365 |||| ||||||||||||||||||| Sbjct: 400 atgctgctgcggcggcggccaacc 423
>gb|DQ429834.1| Sorghum bicolor voucher PI221607 locus pSB1418 genomic sequence Length = 428 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 atgcggctgcggcggcggccaacc 365 |||| ||||||||||||||||||| Sbjct: 400 atgctgctgcggcggcggccaacc 423
>gb|DQ429833.1| Sorghum bicolor voucher NSL87902 locus pSB1418 genomic sequence Length = 428 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 atgcggctgcggcggcggccaacc 365 |||| ||||||||||||||||||| Sbjct: 400 atgctgctgcggcggcggccaacc 423
>gb|DQ429832.1| Sorghum bicolor voucher NSL87666 locus pSB1418 genomic sequence Length = 428 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 atgcggctgcggcggcggccaacc 365 |||| ||||||||||||||||||| Sbjct: 400 atgctgctgcggcggcggccaacc 423
>gb|DQ429831.1| Sorghum bicolor voucher NSL77217 locus pSB1418 genomic sequence Length = 428 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 atgcggctgcggcggcggccaacc 365 |||| ||||||||||||||||||| Sbjct: 400 atgctgctgcggcggcggccaacc 423
>gb|DQ429830.1| Sorghum bicolor voucher NSL77034 locus pSB1418 genomic sequence Length = 428 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 atgcggctgcggcggcggccaacc 365 |||| ||||||||||||||||||| Sbjct: 400 atgctgctgcggcggcggccaacc 423
>gb|DQ429829.1| Sorghum bicolor voucher NSL56174 locus pSB1418 genomic sequence Length = 428 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 atgcggctgcggcggcggccaacc 365 |||| ||||||||||||||||||| Sbjct: 400 atgctgctgcggcggcggccaacc 423
>gb|DQ429828.1| Sorghum bicolor voucher NSL56003 locus pSB1418 genomic sequence Length = 428 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 atgcggctgcggcggcggccaacc 365 |||| ||||||||||||||||||| Sbjct: 400 atgctgctgcggcggcggccaacc 423
>gb|DQ429827.1| Sorghum bicolor voucher NSL55243 locus pSB1418 genomic sequence Length = 428 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 atgcggctgcggcggcggccaacc 365 |||| ||||||||||||||||||| Sbjct: 400 atgctgctgcggcggcggccaacc 423
>gb|DQ429826.1| Sorghum bicolor voucher NSL51365 locus pSB1418 genomic sequence Length = 428 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 atgcggctgcggcggcggccaacc 365 |||| ||||||||||||||||||| Sbjct: 400 atgctgctgcggcggcggccaacc 423
>gb|DQ429825.1| Sorghum bicolor voucher NSL50875 locus pSB1418 genomic sequence Length = 428 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 atgcggctgcggcggcggccaacc 365 |||| ||||||||||||||||||| Sbjct: 400 atgctgctgcggcggcggccaacc 423
>gb|DQ429824.1| Sorghum bicolor voucher BTx623 locus pSB1418 genomic sequence Length = 428 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 atgcggctgcggcggcggccaacc 365 |||| ||||||||||||||||||| Sbjct: 400 atgctgctgcggcggcggccaacc 423
>ref|NM_080331.2| Drosophila melanogaster bifid CG3578-RA (bi), mRNA Length = 4060 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 336 ccgaccatgcggctgcggcggcggccaa 363 |||| ||||| ||||||||||||||||| Sbjct: 2164 ccgaacatgcagctgcggcggcggccaa 2191
>ref|XM_380142.3| PREDICTED: Homo sapiens hypothetical LOC401399 (LOC401399), mRNA Length = 2971 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 353 gcggcggccaacccggacccgtcc 376 |||||||||||||||| ||||||| Sbjct: 2369 gcggcggccaacccggccccgtcc 2392
>ref|XM_938040.1| PREDICTED: Homo sapiens hypothetical protein LOC648962 (LOC648962), mRNA Length = 2971 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 353 gcggcggccaacccggacccgtcc 376 |||||||||||||||| ||||||| Sbjct: 2369 gcggcggccaacccggccccgtcc 2392
>ref|XM_379517.3| PREDICTED: Homo sapiens hypothetical LOC401399 (LOC401399), mRNA Length = 2971 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 353 gcggcggccaacccggacccgtcc 376 |||||||||||||||| ||||||| Sbjct: 2369 gcggcggccaacccggccccgtcc 2392
>gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, complete sequence Length = 168843 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ctatcccctcccgtcccctc 67 |||||||||||||||||||| Sbjct: 72465 ctatcccctcccgtcccctc 72446
>gb|AC010655.7| Homo sapiens chromosome 7 clone RP11-155G14, complete sequence Length = 165090 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 353 gcggcggccaacccggacccgtcc 376 |||||||||||||||| ||||||| Sbjct: 21207 gcggcggccaacccggccccgtcc 21184
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 332 gagcccgaccatgcggctgcggcg 355 ||||||||||||||||| |||||| Sbjct: 705706 gagcccgaccatgcggcggcggcg 705683
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 tgcggctgcggcggcggcca 362 |||||||||||||||||||| Sbjct: 3301731 tgcggctgcggcggcggcca 3301750
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tcccgtcccctcgccgccgg 75 |||||||||||||||||||| Sbjct: 21470815 tcccgtcccctcgccgccgg 21470796 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 tcccctcccgtcccctcgccgccg 74 ||||||||| |||||||||||||| Sbjct: 3273331 tcccctcccctcccctcgccgccg 3273308
>gb|AC146031.4| Pan troglodytes BAC clone RP43-124G6 from chromosome 7, complete sequence Length = 172449 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 353 gcggcggccaacccggacccgtcc 376 |||||||||||||||| ||||||| Sbjct: 80434 gcggcggccaacccggccccgtcc 80457
>gb|AC092614.2| Homo sapiens BAC clone RP11-192M8 from 2, complete sequence Length = 106992 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 tttcttctccgtcttccctttttc 30 |||||||||| ||||||||||||| Sbjct: 85103 tttcttctccctcttccctttttc 85126
>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020C11 Length = 163328 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tcccgtcccctcgccgccgg 75 |||||||||||||||||||| Sbjct: 65742 tcccgtcccctcgccgccgg 65723
>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1120_C08 Length = 150300 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 342 atgcggctgcggcggcggccaacc 365 ||||||| |||||||||||||||| Sbjct: 68662 atgcggcggcggcggcggccaacc 68639
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 cctcgatctccgccggcgcc 394 |||||||||||||||||||| Sbjct: 6225209 cctcgatctccgccggcgcc 6225190 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tcgccgccggcgcgcccgcc 85 |||||||||||||||||||| Sbjct: 5316869 tcgccgccggcgcgcccgcc 5316850
>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004A09 Length = 158826 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 gcttcggttccgccgtcgcc 188 |||||||||||||||||||| Sbjct: 29474 gcttcggttccgccgtcgcc 29455
>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696E01 Length = 194056 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 gcttcggttccgccgtcgcc 188 |||||||||||||||||||| Sbjct: 110271 gcttcggttccgccgtcgcc 110252
>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1103G11 Length = 182931 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 tcccctcccgtcccctcgccgccg 74 ||||||||| |||||||||||||| Sbjct: 145518 tcccctcccctcccctcgccgccg 145495
>dbj|AP004126.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ9003_G05 Length = 141860 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 tcccctcccgtcccctcgccgccg 74 ||||||||| |||||||||||||| Sbjct: 22191 tcccctcccctcccctcgccgccg 22168
>dbj|AP004619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0583B06 Length = 134442 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 342 atgcggctgcggcggcggccaacc 365 ||||||| |||||||||||||||| Sbjct: 110704 atgcggcggcggcggcggccaacc 110681
>dbj|AK106980.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-H07, full insert sequence Length = 1042 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 gcttcggttccgccgtcgcc 188 |||||||||||||||||||| Sbjct: 203 gcttcggttccgccgtcgcc 222
>dbj|AK067560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111H11, full insert sequence Length = 2739 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 ccccctcccctccgccctcgccga 119 ||||| |||||||||||||||||| Sbjct: 266 cccccccccctccgccctcgccga 243
>gb|AE003431.5| Drosophila melanogaster chromosome X, section 15 of 74 of the complete sequence Length = 310993 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 336 ccgaccatgcggctgcggcggcggccaa 363 |||| ||||| ||||||||||||||||| Sbjct: 93095 ccgaacatgcagctgcggcggcggccaa 93122
>dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53M8, complete sequence Length = 185588 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ctatcccctcccgtcccctc 67 |||||||||||||||||||| Sbjct: 177821 ctatcccctcccgtcccctc 177802
>dbj|AP006304.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53I21, complete sequence Length = 156583 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ctatcccctcccgtcccctc 67 |||||||||||||||||||| Sbjct: 4584 ctatcccctcccgtcccctc 4565
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 ctccggcgcccatggtcgac 301 |||||||||||||||||||| Sbjct: 1982466 ctccggcgcccatggtcgac 1982485
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 tgcggctgcggcggcggcca 362 |||||||||||||||||||| Sbjct: 3301676 tgcggctgcggcggcggcca 3301695
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 tttcttctccgtcttccctt 26 |||||||||||||||||||| Sbjct: 5904959 tttcttctccgtcttccctt 5904940
>emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109081 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 tgcggctgcggcggcggcca 362 |||||||||||||||||||| Sbjct: 92117 tgcggctgcggcggcggcca 92136
>gb|U78289.1|SFU78289 Streptomyces fradiae tylactone synthase, starter module and modules 1-7, (tylG) gene, complete cds Length = 43280 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ccgtcccctcgccgccggcg 77 |||||||||||||||||||| Sbjct: 13710 ccgtcccctcgccgccggcg 13691
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 336 ccgaccatgcggctgcggcggcgg 359 |||| ||||||||||||||||||| Sbjct: 532779 ccgaacatgcggctgcggcggcgg 532802
>gb|U20164.1|MMU20164 Mus musculus early mesodermal basic-helix-loop-helix factor bHLH-EC2 (TCF15) gene, promoter and partial cds Length = 813 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ccgcccccgccgtgcgctcc 144 |||||||||||||||||||| Sbjct: 664 ccgcccccgccgtgcgctcc 645
>gb|L35922.1|HAMBHLH Mesocricetus auratus helix-loop-helix transcription factor (meso1) mRNA, complete cds Length = 1210 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ccgcccccgccgtgcgctcc 144 |||||||||||||||||||| Sbjct: 243 ccgcccccgccgtgcgctcc 224
>emb|AL929067.8| Mouse DNA sequence from clone RP24-69A20 on chromosome 11, complete sequence Length = 87925 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 cgccgccggcgcgcccgccc 86 |||||||||||||||||||| Sbjct: 75671 cgccgccggcgcgcccgccc 75652
>emb|AL831735.10| Mouse DNA sequence from clone RP23-452D3 on chromosome 2, complete sequence Length = 193718 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ccgcccccgccgtgcgctcc 144 |||||||||||||||||||| Sbjct: 9380 ccgcccccgccgtgcgctcc 9361
>gb|M81796.1|DROOPTBA Drosophila melanogaster optomotor-blind mRNA, complete cds Length = 4069 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 336 ccgaccatgcggctgcggcggcggccaa 363 |||| ||||| ||||||||||||||||| Sbjct: 2173 ccgaacatgcagctgcggcggcggccaa 2200
>dbj|AP000071.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region, section 7/19 Length = 100000 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ctatcccctcccgtcccctc 67 |||||||||||||||||||| Sbjct: 57179 ctatcccctcccgtcccctc 57198 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,908,194 Number of Sequences: 3902068 Number of extensions: 2908194 Number of successful extensions: 83685 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80982 Number of HSP's gapped (non-prelim): 2703 length of query: 414 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 392 effective length of database: 17,147,199,772 effective search space: 6721702310624 effective search space used: 6721702310624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
