>REXO4_CRYNE (Q5KJQ4) RNA exonuclease 4 (EC 3.1.-.-)|
          Length = 408

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 23/97 (23%)
 Frame = -1

Query: 238 PRHVVGRC-----ESRDARATARGPALRSTANRRGNFDSREE----------------IR 122
           P HV+G+      E+ D   TA G + R    + GN   R++                +R
Sbjct: 310 PEHVLGKRGHDEKEAEDGEETA-GESKRKNRKKSGNGGGRQQFPGGGRKGISSGLDVIVR 368

Query: 121 RNGSR--RAGFGSCVAARVSRGGEGNFFSGGYARWER 17
           RNG R    G G   + R +  GE + F+GG + WE+
Sbjct: 369 RNGQRVDENGRGDGTSRRKAGRGEISTFTGGESWWEQ 405

>K2C3_HUMAN (P12035) Keratin, type II cytoskeletal 3 (Cytokeratin-3) (CK-3)|
           (Keratin-3) (K3) (65 kDa cytokeratin)
          Length = 629

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = -1

Query: 199 RATARGPALRSTANRRGNFDSREEIRRNGSRRAGFGSCVAARVSRGGEGNFFSGGY 32
           R+ A G   RS  N  GN      +   GSR  GFG   ++    GG G  F  GY
Sbjct: 46  RSGAGGFGSRSLYNLGGNKSISISVAAGGSRAGGFGGGRSSCAFAGGYGGGFGSGY 101

>MATK_HUMAN (P42679) Megakaryocyte-associated tyrosine-protein kinase (EC|
           2.7.10.2) (Tyrosine-protein kinase CTK) (Protein kinase
           HYL) (Hematopoietic consensus tyrosine-lacking kinase)
          Length = 507

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +3

Query: 39  PLKKFPSPPRETLAATQEPNPARRDPFRRISSRESKFPRRFAVDLRAGPLAVALASRDSH 218
           P +  P P    +++  E  PARR PFR+++        + A +LR+     +++ +D+ 
Sbjct: 445 PPEGCPGPVHVLMSSCWEAEPARRPPFRKLA-------EKLARELRSAGAPASVSGQDAD 497

Query: 219 RPTTCRGASP 248
             T+ R   P
Sbjct: 498 GSTSPRSQEP 507

>EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)|
           (EBNA-2)
          Length = 487

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +3

Query: 36  PPLKKFPSPPRETLAATQEPNPARRDPFRRISSRESKFPRRFAVDLRAGPLAVAL 200
           PP    P PP+   A TQEP+P  RDP                 D+  GPLA A+
Sbjct: 91  PPPPPPPPPPQRRDAWTQEPSPLDRDP--------------LGYDVGHGPLASAM 131

>DDX3Y_PANTR (Q6GVM6) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box|
           protein 3, Y-chromosomal)
          Length = 660

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = -1

Query: 244 EAPRHVVGRCESRDARATARGPALRSTANR-RGNFDSREEIRRNGSRRAGFGSC--VAAR 74
           E P  +         +  +RG   RS +NR  G F +R+  + +GS  +GFG+    ++R
Sbjct: 564 EVPSWLENMAYEHQYKGGSRG---RSKSNRFSGGFGARDYRQSSGSSSSGFGASRGSSSR 620

Query: 73  VSRGGEGN---FFSGGY 32
              GG GN   F  GGY
Sbjct: 621 SGGGGYGNSRGFGGGGY 637

>DDX3Y_HUMAN (O15523) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box|
           protein 3, Y-chromosomal)
          Length = 660

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = -1

Query: 172 RSTANR-RGNFDSREEIRRNGSRRAGFGSC--VAARVSRGGEGN---FFSGGY 32
           RS +NR  G F +R+  + +GS  +GFG+    ++R   GG GN   F  GGY
Sbjct: 585 RSKSNRFSGGFGARDYRQSSGSSSSGFGASRGSSSRSGGGGYGNSRGFGGGGY 637

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = +3

Query: 36  PPLKK--FPSPPRETLAATQEPNPARR-----DPFRRISSRESKFPRRFAVDLRAGPLAV 194
           PP+++   PSPP +   A+  P P RR      P RR+S       R   V  R  P   
Sbjct: 612 PPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSP--- 668

Query: 195 ALASRDSHRPTTCRGASPTR 254
           +L+S+  HR    +G+SP+R
Sbjct: 669 SLSSK--HR----KGSSPSR 682

>E41L2_MOUSE (O70318) Band 4.1-like protein 2 (Generally expressed protein 4.1)|
           (4.1G)
          Length = 988

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 200 ESDGERPRPKIDRESTGKLRFAGGNPTE 117
           E  G +P P ++R+ST +LR  G +P+E
Sbjct: 42  EEKGSQPGPPVERQSTPRLRKRGKDPSE 69

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = +3

Query: 36  PPLKK--FPSPPRETLAATQEPNPARR-----DPFRRISSRESKFPRRFAVDLRAGPLAV 194
           PP+++   PSPP +   A+  P P RR      P RR+S       R   V  R  P   
Sbjct: 598 PPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSP--- 654

Query: 195 ALASRDSHRPTTCRGASPTR 254
           +L+S+  HR    +G+SP+R
Sbjct: 655 SLSSK--HR----KGSSPSR 668

>NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
           (N-methyl D-aspartate receptor subtype 2C) (NR2C)
           (NMDAR2C)
          Length = 1239

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
 Frame = +1

Query: 85  HKSQIPPAEIRSVGFPPANRSFPVDSRSILGRGLSPSLSRR----------GIHTGRRHV 234
           H   +P   + S   PPA  +FPV   S++      SL ++          G H+ RR  
Sbjct: 250 HVWLVPNLALGSTDAPPA--AFPVGLISVVTESWRLSLRQKVRDGVAILALGAHSYRRQY 307

Query: 235 EVLPLPAAGLRAKPSGRAP 291
             LP PA   R+ P   +P
Sbjct: 308 GTLPAPAGDCRSHPGPVSP 326

>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
           (N-methyl D-aspartate receptor subtype 2C) (NR2C)
           (NMDAR2C)
          Length = 1237

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
 Frame = +1

Query: 85  HKSQIPPAEIRSVGFPPANRSFPVDSRSILGRGLSPSLSRR----------GIHTGRRHV 234
           H   +P   + S   PPA  +FPV   S++      SL ++          G H+ RR  
Sbjct: 250 HVWLVPNLALGSTDAPPA--AFPVGLISVVTESWRLSLRQKVRDGVAILALGAHSYRRQY 307

Query: 235 EVLPLPAAGLRAKPSGRAP 291
             LP PA   R+ P   +P
Sbjct: 308 GTLPAPAGDCRSHPGPVSP 326

>CAP2_RAT (P52481) Adenylyl cyclase-associated protein 2 (CAP 2)|
          Length = 477

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +3

Query: 36  PPLKKFPSPPRETLAATQEPNPARRDPFRRISSRE--SKFPRRFAVDLRAGPLAVALASR 209
           PP    P PP E     +EP+P+R   F +++  E  +K  R    D +        A  
Sbjct: 238 PPPPPGPPPPFENEGGKEEPSPSRSALFAQLNQGEAITKGLRHVTDDKKIYKNPSLRAQG 297

Query: 210 DSHRPTTCRGASPTRRRA 263
               PT  R  SPT  ++
Sbjct: 298 QIRSPTKTRTPSPTSSKS 315

>RSMB_XYLFA (Q9PEV0) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 421

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 187 SPSLSRRGIHTGRRHVEVLPLPAAGLRAKPSGRAP 291
           +P   R  +  G RH  V  L AAGL A PSG  P
Sbjct: 159 APMWLRVNLRYGDRHTYVQRLQAAGLEAVPSGLVP 193

>CYP1_BRUMA (Q27450) Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (PPIase|
           1) (Cyclophilin) (BmCYP-1)
          Length = 843

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -1

Query: 268 HVARRRVGEAPRHVVGRC-ESRDARATARGPALRSTANRRGNFDSREEIRRNGSRRA 101
           HV R  V E  RH V     S D + T R        +RRG  D +E++  NG + A
Sbjct: 410 HVTRHFVKEKNRHKVDEVGNSEDMKQTKR--------DRRGRADEKEKVEVNGEKAA 458

>RSMB_XYLFT (Q87AR1) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 431

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 187 SPSLSRRGIHTGRRHVEVLPLPAAGLRAKPSGRAP 291
           +P   R  +  G RH  V  L AAGL A PSG  P
Sbjct: 167 APMWLRVNLRYGDRHTYVQRLQAAGLEAVPSGLVP 201

>PIWL2_MOUSE (Q8CDG1) Piwi-like protein 2|
          Length = 971

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 130 PPANRSFPVDSRSILGRGLSPSLSRRGIHTGRRHVEVLPLPAAG 261
           PP+ R  P   R +LGRGLS ++ R+     R  +    + AAG
Sbjct: 84  PPSKREVPPLGRGVLGRGLSANMVRKDREEPRSSLPDPSVLAAG 127

>FBRL_ASHGO (Q756P0) Fibrillarin|
          Length = 326

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 24/60 (40%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = -1

Query: 211 SRDARATARGPALRSTANRRGNFDSREEIRRNGSR--RAGFGSCVAARVSRGGEGNFFSG 38
           SR  R  ARG A       RG F       R GSR  R GF S   AR   GG G    G
Sbjct: 7   SRGGRGGARGGARGGARGGRGGFGG-----RGGSRGGRGGFDSRGGARGGFGGRGGSRGG 61

>NFASC_RAT (P97685) Neurofascin precursor|
          Length = 1240

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 8   PFLPFPSRVAAAEKIPLPSP*NPSRHTRAKSRPPRSVPSD 127
           P++ +  RV A  ++    P  PS   R    PP S PSD
Sbjct: 694 PYVNYQFRVIAVNEVGSSHPSLPSERYRTSGAPPESNPSD 733

>NFASC_MOUSE (Q810U3) Neurofascin precursor|
          Length = 1240

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 8   PFLPFPSRVAAAEKIPLPSP*NPSRHTRAKSRPPRSVPSD 127
           P++ +  RV A  ++    P  PS   R    PP S PSD
Sbjct: 694 PYVNYQFRVIAVNEVGSSHPSLPSERYRTSGAPPESNPSD 733

>CBIO2_STRAW (Q82B58) Putative cobalt import ATP-binding protein cbiO 2|
          Length = 561

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +2

Query: 17  PFPSRVAAAEKIPLPSP*NPSRHTRAKSRPPRSVPSDFLP 136
           P P+  A A   P PSP  P R    + R P  VPS  LP
Sbjct: 276 PTPTATATATAAPAPSPSRPRRPRLLRKRAP--VPSAALP 313

>MRAW_DEHSC (Q3ZZA4) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 349

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 22/47 (46%), Positives = 25/47 (53%)
 Frame = -1

Query: 181 PALRSTANRRGNFDSREEIRRNGSRRAGFGSCVAARVSRGGEGNFFS 41
           P+LR   NRR    S EEI RN   R+     VA R+   GEG FFS
Sbjct: 273 PSLR-IINRRVITPSDEEISRNPRSRSA-KMRVAERIIEPGEGRFFS 317

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
 Frame = +3

Query: 36  PPLKK--FPSPPRETLAATQEPNPARR-----DPFRRISSRESKFPRRFAVDLRAGPLAV 194
           PP+++   PSPP +   A+  P P RR      P RR+S       R   V  R  P   
Sbjct: 617 PPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSP--- 673

Query: 195 ALASRDSHRPTTCRGASPTR 254
           +L+S+  HR    +G+SP R
Sbjct: 674 SLSSK--HR----KGSSPGR 687

>CNTN1_CHICK (P14781) Contactin-1 precursor (Neural cell recognition molecule|
           F11)
          Length = 1010

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 8   PFLPFPSRVAAAEKIPLPSP*NPSRHTRAKSRPPRSVPSD 127
           P++ +  R+ A   +    P  PS+  R +  PP   PSD
Sbjct: 664 PWMEYEFRIIATNTLGTGEPSMPSQRIRTEGAPPNVAPSD 703

>PL10_MOUSE (P16381) Putative ATP-dependent RNA helicase Pl10 (EC 3.6.1.-)|
          Length = 660

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -1

Query: 205 DARATARGPALRSTANRRGNFDSREEIRRNGSRRAGFGSCVAARVSRGGEGNFFSGGYAR 26
           D RA +   + R  +  RG FD R         R+ + S V +R  R G G F  GG +R
Sbjct: 75  DTRAKSSFFSDRGGSGSRGRFDERG--------RSDYES-VGSRGGRSGFGKFERGGNSR 125

Query: 25  W 23
           W
Sbjct: 126 W 126

>NETR_GORGO (Q5G270) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 876

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 53  PLPSP*NPSRHTRAKSRPPRSVPSDFLPRIEVSP 154
           P P P  PS +   + RPPR+ P   LPR    P
Sbjct: 37  PPPGPHYPSYYLPTQQRPPRTRPPPPLPRFPRPP 70


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,888,695
Number of Sequences: 219361
Number of extensions: 1612641
Number of successful extensions: 5128
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 4719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5113
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)