ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl22a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHOT1_ARATH (O48963) Phototropin-1 (EC 2.7.11.1) (Non-phototropi... 30 1.1
2NDPA_PSEAE (Q9HXF7) Nucleoid-associated protein ndpA 29 3.2

>PHOT1_ARATH (O48963) Phototropin-1 (EC 2.7.11.1) (Non-phototropic hypocotyl|
           protein 1) (Root phototropism protein 1)
          Length = 996

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +3

Query: 267 EEPPQRPKQQ-LPRDSRGSLEVFD 335
           E+P  +P  + LPRD+RGSLEVF+
Sbjct: 5   EKPSTKPSSRTLPRDTRGSLEVFN 28



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>NDPA_PSEAE (Q9HXF7) Nucleoid-associated protein ndpA|
          Length = 334

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 131 RPQLFSSSYFIYLLGTGISYEEEEEGLLKRSKAEQLRQQ 15
           R +  S S+  +LLG+ + Y+EE + L+ R    QL+ Q
Sbjct: 290 RAEGLSISFEAHLLGSKVEYDEERDMLIIRQLPTQLKDQ 328


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,482,495
Number of Sequences: 219361
Number of extensions: 300231
Number of successful extensions: 1060
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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