ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl22a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450354.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.020
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.020
3dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.020
4gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 44 0.079
5gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 1.2
6ref|XM_809630.1| Trypanosoma cruzi strain CL Brener protein tran... 40 1.2
7ref|XM_815839.1| Trypanosoma cruzi strain CL Brener protein tran... 40 1.2
8emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete ... 40 1.2
9emb|BX640434.1| Bordetella parapertussis strain 12822, complete ... 40 1.2
10emb|BX640421.1| Bordetella pertussis strain Tohama I, complete g... 40 1.2
11dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 1.2
12dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 1.2
13gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 1.2
14gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipie... 38 4.9
15ref|XM_450335.1| Oryza sativa (japonica cultivar-group), mRNA 38 4.9
16ref|XM_513380.1| PREDICTED: Pan troglodytes similar to KIAA0467 ... 38 4.9
17ref|NM_001016909.2| Xenopus tropicalis hypothetical protein LOC5... 38 4.9
18gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete se... 38 4.9
19gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 38 4.9
20gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 38 4.9
21gb|AY658814.1| Synthetic construct Peudomonas aeruginosa clone F... 38 4.9
22gb|BC047154.1| Mus musculus RIKEN cDNA A930038C07 gene, mRNA (cD... 38 4.9
23gb|BC070548.1| Xenopus laevis Mcm10p, mRNA (cDNA clone MGC:79876... 38 4.9
24gb|AC141898.3| Mus musculus BAC clone RP23-155I18 from chromosom... 38 4.9
25ref|NM_015284.2| Homo sapiens KIAA0467 (KIAA0467), mRNA 38 4.9
26gb|AC115940.11| Mus musculus chromosome 5, clone RP24-553D12, co... 38 4.9
27gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 38 4.9
28emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete ch... 38 4.9
29gb|AC127275.4| Mus musculus BAC clone RP24-207I8 from chromosome... 38 4.9
30emb|CR731330.2|CNS0GR8N Tetraodon nigroviridis full-length cDNA 38 4.9
31emb|CR688462.2|CNS0FU62 Tetraodon nigroviridis full-length cDNA 38 4.9
32emb|CR688380.2|CNS0FU3S Tetraodon nigroviridis full-length cDNA 38 4.9
33emb|CR688266.2|CNS0FU0M Tetraodon nigroviridis full-length cDNA 38 4.9
34emb|CR656109.2|CNS0F583 Tetraodon nigroviridis full-length cDNA 38 4.9
35emb|CR653517.2|CNS0F383 Tetraodon nigroviridis full-length cDNA 38 4.9
36emb|CR638918.1|CNS0ERYK Tetraodon nigroviridis full-length cDNA 38 4.9
37emb|CR636988.2|CNS0EQGY Tetraodon nigroviridis full-length cDNA 38 4.9
38emb|AL583862.35| Human DNA sequence from clone RP11-506B15 on ch... 38 4.9
39emb|X82560.1|RMCYCHJKL R.meliloti cycH, J, K, L genes 38 4.9
40emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome... 38 4.9
41emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 38 4.9
42emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 38 4.9
43emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 38 4.9
44gb|AE005862.1| Caulobacter crescentus CB15 section 188 of 359 of... 38 4.9
45gb|AY785851.1| Hordeum vulgare subsp. vulgare cultivar Strider H... 38 4.9
46gb|AY785853.1| Hordeum vulgare subsp. vulgare cultivar CI16151 (... 38 4.9
47gb|AY785848.1| Hordeum vulgare subsp. vulgare cultivar Morex HvC... 38 4.9
48gb|AY785850.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo H... 38 4.9
49gb|AY785849.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo H... 38 4.9
50ref|XM_695449.1| PREDICTED: Danio rerio similar to angiopoietin-... 38 4.9
51ref|NM_172399.1| Mus musculus RIKEN cDNA A930038C07 gene (A93003... 38 4.9
52dbj|AK043209.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 38 4.9
53gb|AF298230.1| Hordeum vulgare CBF1-like protein BCBF1 (BCBF1) m... 38 4.9
54dbj|AK029210.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 38 4.9
55dbj|AK049802.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 38 4.9
56gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 38 4.9
57dbj|AB007936.2| Homo sapiens mRNA for KIAA0467 protein, partial cds 38 4.9
58gb|AC133606.2| Homo sapiens BAC clone RP11-494P20 from 2, comple... 38 4.9
59gb|AF314535.1|AF314535 Xenopus laevis Mcm10p mRNA, complete cds 38 4.9
60gb|AC092598.2| Homo sapiens BAC clone RP11-114B11 from 2, comple... 38 4.9
61gb|AE004926.1| Pseudomonas aeruginosa PAO1, section 487 of 529 o... 38 4.9
62ref|XM_231864.3| PREDICTED: Rattus norvegicus similar to RIKEN c... 38 4.9
63dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.9
64dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic D... 38 4.9
65gb|AC153884.1| Mus musculus 6 BAC RP23-476E22 (Roswell Park Can... 38 4.9
66emb|AL954695.14| Zebrafish DNA sequence from clone CH211-202N12 ... 38 4.9
67gb|AC158677.2| Mus musculus 6 BAC RP23-175H4 (Roswell Park Cance... 38 4.9
68dbj|AK119936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 4.9
69emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 38 4.9
70gb|AY739297.1| Zea mays adenosine 5'-phosphosulfate reductase 2 ... 38 4.9
71gb|BC090220.1| Xenopus laevis Mcm10p, mRNA (cDNA clone MGC:84836... 38 4.9
72emb|CR848457.2| Xenopus tropicalis finished cDNA, clone TEgg053h10 38 4.9
73gb|AE015451.1| Pseudomonas putida KT2440 complete genome 38 4.9
74gb|L40331.1|LEISIR2A Leishmania major silent information regulat... 38 4.9 
>ref|XM_450354.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 345

 Score = 46.1 bits (23), Expect = 0.020
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 37  ccagcagaagcagcagatgccgccgtc 63
           |||||||||| ||||||||||||||||
Sbjct: 79  ccagcagaagaagcagatgccgccgtc 105
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.020
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 37      ccagcagaagcagcagatgccgccgtc 63
               |||||||||| ||||||||||||||||
Sbjct: 4362718 ccagcagaagaagcagatgccgccgtc 4362744



 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 88       ctccgcaggggatccgctc 106
                |||||||||||||||||||
Sbjct: 18143345 ctccgcaggggatccgctc 18143327



 Score = 38.2 bits (19), Expect = 4.9
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 37      ccagcagaagcagcagatgccgccgtc 63
               ||||||||||  |||||||||||||||
Sbjct: 4223535 ccagcagaagatgcagatgccgccgtc 4223509
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>dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1279D09
          Length = 134793

 Score = 46.1 bits (23), Expect = 0.020
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 37    ccagcagaagcagcagatgccgccgtc 63
             |||||||||| ||||||||||||||||
Sbjct: 65536 ccagcagaagaagcagatgccgccgtc 65562
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 23      cgccgcgccgacggccagcagaagcagcag 52
               |||||||||||||| |||| ||||||||||
Sbjct: 1459640 cgccgcgccgacggtcagcggaagcagcag 1459611
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 29     gccgacggccagcagaagcagcag 52
              |||||||||||||||||| |||||
Sbjct: 531843 gccgacggccagcagaaggagcag 531820
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>ref|XM_809630.1| Trypanosoma cruzi strain CL Brener protein transport protein
          sec13 (Tc00.1047053506525.20) partial mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 38 cagcagaagcagcagatgccgccg 61
          |||||| |||||||||||||||||
Sbjct: 58 cagcagcagcagcagatgccgccg 81
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>ref|XM_815839.1| Trypanosoma cruzi strain CL Brener protein transport protein
          sec13 (Tc00.1047053511283.20) partial mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 38 cagcagaagcagcagatgccgccg 61
          |||||| |||||||||||||||||
Sbjct: 58 cagcagcagcagcagatgccgccg 81
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>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16
          Length = 348074

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     gacggccagcagaagcagca 51
              ||||||||||||||||||||
Sbjct: 190066 gacggccagcagaagcagca 190085
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>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14
          Length = 344805

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     gacggccagcagaagcagca 51
              ||||||||||||||||||||
Sbjct: 142737 gacggccagcagaagcagca 142756
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>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12
          Length = 349726

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    gacggccagcagaagcagca 51
             ||||||||||||||||||||
Sbjct: 67129 gacggccagcagaagcagca 67110
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 19      ctcgcgccgcgccgacggcc 38
               ||||||||||||||||||||
Sbjct: 2574723 ctcgcgccgcgccgacggcc 2574742
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 52      gatgccgccgtccgccatggcgacgccg 79
               ||||||||||||  ||||||||||||||
Sbjct: 7291094 gatgccgccgtcatccatggcgacgccg 7291067



 Score = 40.1 bits (20), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 57      cgccgtccgccatggcgacgccgc 80
               |||| |||||||||||||||||||
Sbjct: 1467697 cgccctccgccatggcgacgccgc 1467674
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 23      cgccgcgccgacggccagca 42
               ||||||||||||||||||||
Sbjct: 4129811 cgccgcgccgacggccagca 4129792
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>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940135D9, complete sequence
          Length = 93659

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    cgcgccgcgccgacggcca 39
             |||||||||||||||||||
Sbjct: 52853 cgcgccgcgccgacggcca 52871
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>ref|XM_450335.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 586

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 37 ccagcagaagcagcagatgccgccgtc 63
          ||||||||||  |||||||||||||||
Sbjct: 56 ccagcagaagatgcagatgccgccgtc 82
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>ref|XM_513380.1| PREDICTED: Pan troglodytes similar to KIAA0467 protein (LOC456825),
           mRNA
          Length = 2101

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 41  cagaagcagcagatgccgc 59
           |||||||||||||||||||
Sbjct: 109 cagaagcagcagatgccgc 91
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>ref|NM_001016909.2| Xenopus tropicalis hypothetical protein LOC549663 (LOC549663), mRNA
          Length = 3072

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 38   cagcagaagcagcagatgc 56
            |||||||||||||||||||
Sbjct: 1699 cagcagaagcagcagatgc 1717
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>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence
          Length = 285444

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 61     gtccgccatggcgacgccg 79
              |||||||||||||||||||
Sbjct: 252716 gtccgccatggcgacgccg 252698
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 31      cgacggccagcagaagcag 49
               |||||||||||||||||||
Sbjct: 1239700 cgacggccagcagaagcag 1239718
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     ccgcgccgacggccagcag 43
              |||||||||||||||||||
Sbjct: 777910 ccgcgccgacggccagcag 777928
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>gb|AY658814.1| Synthetic construct Peudomonas aeruginosa clone FLH034452.01F
           PA5132 gene, partial cds
          Length = 819

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 28  cgccgacggccagcagaagcagc 50
           ||||||| |||||||||||||||
Sbjct: 469 cgccgacagccagcagaagcagc 447
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>gb|BC047154.1| Mus musculus RIKEN cDNA A930038C07 gene, mRNA (cDNA clone MGC:54980
           IMAGE:6489681), complete cds
          Length = 2790

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  ccagcagaagcagcagatg 55
           |||||||||||||||||||
Sbjct: 799 ccagcagaagcagcagatg 817
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>gb|BC070548.1| Xenopus laevis Mcm10p, mRNA (cDNA clone MGC:79876 IMAGE:6636073),
            complete cds
          Length = 3380

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 38   cagcagaagcagcagatgc 56
            |||||||||||||||||||
Sbjct: 1736 cagcagaagcagcagatgc 1754
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>gb|AC141898.3| Mus musculus BAC clone RP23-155I18 from chromosome 5, complete sequence
          Length = 232201

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     agcagaagcagcagatgcc 57
              |||||||||||||||||||
Sbjct: 204788 agcagaagcagcagatgcc 204770
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>ref|NM_015284.2| Homo sapiens KIAA0467 (KIAA0467), mRNA
          Length = 10217

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   cagaagcagcagatgccgc 59
            |||||||||||||||||||
Sbjct: 5598 cagaagcagcagatgccgc 5580
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>gb|AC115940.11| Mus musculus chromosome 5, clone RP24-553D12, complete sequence
          Length = 189685

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     agcagaagcagcagatgcc 57
              |||||||||||||||||||
Sbjct: 103648 agcagaagcagcagatgcc 103666
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 33     acggccagcagaagcagca 51
              |||||||||||||||||||
Sbjct: 451249 acggccagcagaagcagca 451267
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>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     gatgccgccgtccgccatg 70
              |||||||||||||||||||
Sbjct: 244687 gatgccgccgtccgccatg 244669
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>gb|AC127275.4| Mus musculus BAC clone RP24-207I8 from chromosome 5, complete sequence
          Length = 180919

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     agcagaagcagcagatgcc 57
              |||||||||||||||||||
Sbjct: 178580 agcagaagcagcagatgcc 178598
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>emb|CR731330.2|CNS0GR8N Tetraodon nigroviridis full-length cDNA
          Length = 1118

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 34 cggccagcagaagcagcag 52
          |||||||||||||||||||
Sbjct: 69 cggccagcagaagcagcag 51
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>emb|CR688462.2|CNS0FU62 Tetraodon nigroviridis full-length cDNA
          Length = 1023

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 34 cggccagcagaagcagcag 52
          |||||||||||||||||||
Sbjct: 42 cggccagcagaagcagcag 24
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>emb|CR688380.2|CNS0FU3S Tetraodon nigroviridis full-length cDNA
          Length = 1101

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 34 cggccagcagaagcagcag 52
          |||||||||||||||||||
Sbjct: 70 cggccagcagaagcagcag 52
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>emb|CR688266.2|CNS0FU0M Tetraodon nigroviridis full-length cDNA
          Length = 1057

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 34 cggccagcagaagcagcag 52
          |||||||||||||||||||
Sbjct: 81 cggccagcagaagcagcag 63
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>emb|CR656109.2|CNS0F583 Tetraodon nigroviridis full-length cDNA
          Length = 1123

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 34 cggccagcagaagcagcag 52
          |||||||||||||||||||
Sbjct: 79 cggccagcagaagcagcag 61
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>emb|CR653517.2|CNS0F383 Tetraodon nigroviridis full-length cDNA
          Length = 1095

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 34 cggccagcagaagcagcag 52
          |||||||||||||||||||
Sbjct: 68 cggccagcagaagcagcag 50
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>emb|CR638918.1|CNS0ERYK Tetraodon nigroviridis full-length cDNA
          Length = 1102

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 34 cggccagcagaagcagcag 52
          |||||||||||||||||||
Sbjct: 63 cggccagcagaagcagcag 45
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>emb|CR636988.2|CNS0EQGY Tetraodon nigroviridis full-length cDNA
          Length = 1068

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 34 cggccagcagaagcagcag 52
          |||||||||||||||||||
Sbjct: 42 cggccagcagaagcagcag 24
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>emb|AL583862.35| Human DNA sequence from clone RP11-506B15 on chromosome 1 Contains the
             3' end of the gene for a novel protein (LOC149469), three
             novel genes (FLJ00408), gene KIAA0467 (FLJ45025,
             FLJ23425), the gene for a novel protein (HT036)
             (FLJ38925), the 5' end of the PTPRF gene for protein
             tyrosine phosphatase receptor type F and a CpG island,
             complete sequence
          Length = 167444

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    cagaagcagcagatgccgc 59
             |||||||||||||||||||
Sbjct: 34587 cagaagcagcagatgccgc 34569
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>emb|X82560.1|RMCYCHJKL R.meliloti cycH, J, K, L genes
          Length = 4781

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 52   gatgccgccgtccgccatg 70
            |||||||||||||||||||
Sbjct: 3874 gatgccgccgtccgccatg 3856
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>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13
          Length = 349564

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    ccgcgccgacggccagcag 43
             |||||||||||||||||||
Sbjct: 91663 ccgcgccgacggccagcag 91681
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>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    ccagcagaagcagcagatg 55
             |||||||||||||||||||
Sbjct: 89383 ccagcagaagcagcagatg 89401
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>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 58    gccgtccgccatggcgacg 76
             |||||||||||||||||||
Sbjct: 88861 gccgtccgccatggcgacg 88843
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>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14
          Length = 320050

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     ccgcgccgacggccagcag 43
              |||||||||||||||||||
Sbjct: 110705 ccgcgccgacggccagcag 110723
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>gb|AE005862.1| Caulobacter crescentus CB15 section 188 of 359 of the complete genome
          Length = 10016

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 22   gcgccgcgccgacggccag 40
            |||||||||||||||||||
Sbjct: 6709 gcgccgcgccgacggccag 6691
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>gb|AY785851.1| Hordeum vulgare subsp. vulgare cultivar Strider HvCBF4 (CBF4) gene,
           complete cds
          Length = 873

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 34  cggccagcagaagcagcag 52
           |||||||||||||||||||
Sbjct: 97  cggccagcagaagcagcag 115
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>gb|AY785853.1| Hordeum vulgare subsp. vulgare cultivar CI16151 (Mla6) HvCBF4B
           (CBF4B) mRNA, complete cds
          Length = 924

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 34  cggccagcagaagcagcag 52
           |||||||||||||||||||
Sbjct: 115 cggccagcagaagcagcag 133
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>gb|AY785848.1| Hordeum vulgare subsp. vulgare cultivar Morex HvCBF4B (CBF4B) mRNA,
           complete cds
          Length = 888

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 34  cggccagcagaagcagcag 52
           |||||||||||||||||||
Sbjct: 113 cggccagcagaagcagcag 131
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>gb|AY785850.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF4B (CBF4B)
           mRNA, complete cds
          Length = 892

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 34  cggccagcagaagcagcag 52
           |||||||||||||||||||
Sbjct: 120 cggccagcagaagcagcag 138
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>gb|AY785849.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF4A (CBF4A)
           mRNA, complete cds
          Length = 967

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 34  cggccagcagaagcagcag 52
           |||||||||||||||||||
Sbjct: 102 cggccagcagaagcagcag 120
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>ref|XM_695449.1| PREDICTED: Danio rerio similar to angiopoietin-like 6 (LOC571819),
           mRNA
          Length = 899

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 55  gccgccgtccgccatggcg 73
           |||||||||||||||||||
Sbjct: 288 gccgccgtccgccatggcg 270
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>ref|NM_172399.1| Mus musculus RIKEN cDNA A930038C07 gene (A930038C07Rik), mRNA
          Length = 4685

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  ccagcagaagcagcagatg 55
           |||||||||||||||||||
Sbjct: 826 ccagcagaagcagcagatg 844
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>dbj|AK043209.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730070N12
           product:unclassifiable, full insert sequence
          Length = 1890

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 39  agcagaagcagcagatgcc 57
           |||||||||||||||||||
Sbjct: 241 agcagaagcagcagatgcc 223
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>gb|AF298230.1| Hordeum vulgare CBF1-like protein BCBF1 (BCBF1) mRNA, complete cds
          Length = 915

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 34  cggccagcagaagcagcag 52
           |||||||||||||||||||
Sbjct: 116 cggccagcagaagcagcag 134
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>dbj|AK029210.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
           library, clone:4831422J22 product:Hypothetical
           fibronectin type III domain containing protein, full
           insert sequence
          Length = 4685

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  ccagcagaagcagcagatg 55
           |||||||||||||||||||
Sbjct: 826 ccagcagaagcagcagatg 844
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>dbj|AK049802.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
           enriched library, clone:C530050N18 product:hypothetical
           Fibronectin type III domain containing protein, full
           insert sequence
          Length = 2840

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  ccagcagaagcagcagatg 55
           |||||||||||||||||||
Sbjct: 850 ccagcagaagcagcagatg 868
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 14      ggttcctcgcgccgcgccg 32
               |||||||||||||||||||
Sbjct: 2603834 ggttcctcgcgccgcgccg 2603852
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>dbj|AB007936.2| Homo sapiens mRNA for KIAA0467 protein, partial cds
          Length = 10217

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   cagaagcagcagatgccgc 59
            |||||||||||||||||||
Sbjct: 5598 cagaagcagcagatgccgc 5580
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>gb|AC133606.2| Homo sapiens BAC clone RP11-494P20 from 2, complete sequence
          Length = 14295

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    cagcagaagcagcagatgc 56
             |||||||||||||||||||
Sbjct: 13503 cagcagaagcagcagatgc 13521
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>gb|AF314535.1|AF314535 Xenopus laevis Mcm10p mRNA, complete cds
          Length = 3497

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 38   cagcagaagcagcagatgc 56
            |||||||||||||||||||
Sbjct: 1798 cagcagaagcagcagatgc 1816
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>gb|AC092598.2| Homo sapiens BAC clone RP11-114B11 from 2, complete sequence
          Length = 164798

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 38   cagcagaagcagcagatgc 56
            |||||||||||||||||||
Sbjct: 1208 cagcagaagcagcagatgc 1226
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>gb|AE004926.1| Pseudomonas aeruginosa PAO1, section 487 of 529 of the complete
            genome
          Length = 11624

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 28   cgccgacggccagcagaagcagc 50
            ||||||| |||||||||||||||
Sbjct: 5280 cgccgacagccagcagaagcagc 5258
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>ref|XM_231864.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA A930038C07
            (predicted) (LOC312401), mRNA
          Length = 3408

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 37   ccagcagaagcagcagatg 55
            |||||||||||||||||||
Sbjct: 2034 ccagcagaagcagcagatg 2052
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>dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0026C08
          Length = 155316

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 88     ctccgcaggggatccgctc 106
              |||||||||||||||||||
Sbjct: 136467 ctccgcaggggatccgctc 136449
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>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0523B07
          Length = 170510

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 37    ccagcagaagcagcagatgccgccgtc 63
             ||||||||||  |||||||||||||||
Sbjct: 47294 ccagcagaagatgcagatgccgccgtc 47268
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>gb|AC153884.1| Mus musculus  6 BAC RP23-476E22 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 195597

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    ccagcagaagcagcagatg 55
             |||||||||||||||||||
Sbjct: 66200 ccagcagaagcagcagatg 66182
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>emb|AL954695.14| Zebrafish DNA sequence from clone CH211-202N12 in linkage group 1,
            complete sequence
          Length = 207004

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 34   cggccagcagaagcagcag 52
            |||||||||||||||||||
Sbjct: 4570 cggccagcagaagcagcag 4588
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>gb|AC158677.2| Mus musculus 6 BAC RP23-175H4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 224075

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 37     ccagcagaagcagcagatg 55
              |||||||||||||||||||
Sbjct: 177479 ccagcagaagcagcagatg 177461
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>dbj|AK119936.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A12,
          full insert sequence
          Length = 586

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 37 ccagcagaagcagcagatgccgccgtc 63
          ||||||||||  |||||||||||||||
Sbjct: 56 ccagcagaagatgcagatgccgccgtc 82
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 23      cgccgcgccgacggccagc 41
               |||||||||||||||||||
Sbjct: 3126792 cgccgcgccgacggccagc 3126810



 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 22      gcgccgcgccgacggccag 40
               |||||||||||||||||||
Sbjct: 2247696 gcgccgcgccgacggccag 2247678
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>gb|AY739297.1| Zea mays adenosine 5'-phosphosulfate reductase 2 (APRL2) mRNA,
            complete cds
          Length = 1923

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 25   ccgcgccgacggccagcagaagc 47
            ||||||||||||| |||||||||
Sbjct: 1313 ccgcgccgacggcgagcagaagc 1335
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>gb|BC090220.1| Xenopus laevis Mcm10p, mRNA (cDNA clone MGC:84836 IMAGE:6325775),
            complete cds
          Length = 3402

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 38   cagcagaagcagcagatgc 56
            |||||||||||||||||||
Sbjct: 1716 cagcagaagcagcagatgc 1734
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>emb|CR848457.2| Xenopus tropicalis finished cDNA, clone TEgg053h10
          Length = 3072

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 38   cagcagaagcagcagatgc 56
            |||||||||||||||||||
Sbjct: 1699 cagcagaagcagcagatgc 1717
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 25      ccgcgccgacggccagcag 43
               |||||||||||||||||||
Sbjct: 4864140 ccgcgccgacggccagcag 4864158
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>gb|L40331.1|LEISIR2A Leishmania major silent information regulator 2 homolog, complete
           cds
          Length = 1474

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 17  tcctcgcgccgcgccgacg 35
           |||||||||||||||||||
Sbjct: 965 tcctcgcgccgcgccgacg 947


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 888,137
Number of Sequences: 3902068
Number of extensions: 888137
Number of successful extensions: 78022
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76246
Number of HSP's gapped (non-prelim): 1776
length of query: 108
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 87
effective length of database: 17,151,101,840
effective search space: 1492145860080
effective search space used: 1492145860080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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