ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl22a02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118L18, full insert sequence Length = 3398 Score = 167 bits (84), Expect = 4e-38 Identities = 195/232 (84%) Strand = Plus / Minus Query: 254 ccacgatccggctccacaaggacggcgtgacggccgtcgccctcgcgccgggctccggcg 313 ||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||||||| Sbjct: 2290 ccacgatccggcttcacaaggatggcgtcacggcgctcgccgtcgcgccgggctccggcg 2231 Query: 314 gctcgctcgcgtccggttccatcgaccactcggtcaagttctactccttcccagacggca 373 ||||| |||||||| |||||||| ||||| |||||||||| || |||||||| || Sbjct: 2230 cgtcgctggcgtccggctccatcgatcactccgtcaagttctgttctttcccagaggggg 2171 Query: 374 cgttccagagcaacgttgcccggttcaccctcccaatccgctcgctggcgttcaacaaga 433 |||||||||||| | |||||||||||||| || ||||| || ||||| |||||||||| Sbjct: 2170 tgttccagagcaatatcgcccggttcaccctgccgatccggtcactggccttcaacaaga 2111 Query: 434 agggcgcccttttggccgccgccggcgacgatgacggcatcaagctgattgc 485 |||| | || |||| || ||||| ||||| |||||||||||| ||||||| Sbjct: 2110 aggggactctgctggcggcggccggagacgacgacggcatcaagttgattgc 2059 Score = 73.8 bits (37), Expect = 5e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 154 cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccgccgcg 213 ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||| Sbjct: 2402 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccgctgcg 2343 Query: 214 g 214 | Sbjct: 2342 g 2342 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 62 ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 111 |||||||||| |||||||| ||||| || |||||||||||||| |||||| Sbjct: 2488 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 2439
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 107 bits (54), Expect = 3e-20 Identities = 90/102 (88%) Strand = Plus / Plus Query: 254 ccacgatccggctccacaaggacggcgtgacggccgtcgccctcgcgccgggctccggcg 313 ||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||||||| Sbjct: 3065840 ccacgatccggcttcacaaggatggcgtcacggcgctcgccgtcgcgccgggctccggcg 3065899 Query: 314 gctcgctcgcgtccggttccatcgaccactcggtcaagttct 355 ||||| |||||||| |||||||| ||||| |||||||||| Sbjct: 3065900 cgtcgctggcgtccggctccatcgatcactccgtcaagttct 3065941 Score = 77.8 bits (39), Expect = 3e-11 Identities = 93/111 (83%) Strand = Plus / Plus Query: 375 gttccagagcaacgttgcccggttcaccctcccaatccgctcgctggcgttcaacaagaa 434 |||||||||||| | |||||||||||||| || ||||| || ||||| ||||||||||| Sbjct: 3066055 gttccagagcaatatcgcccggttcaccctgccgatccggtcactggccttcaacaagaa 3066114 Query: 435 gggcgcccttttggccgccgccggcgacgatgacggcatcaagctgattgc 485 ||| | || |||| || ||||| ||||| |||||||||||| ||||||| Sbjct: 3066115 ggggactctgctggcggcggccggagacgacgacggcatcaagttgattgc 3066165 Score = 73.8 bits (37), Expect = 5e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 154 cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccgccgcg 213 ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||| Sbjct: 3065728 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccgctgcg 3065787 Query: 214 g 214 | Sbjct: 3065788 g 3065788 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 62 ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 111 |||||||||| |||||||| ||||| || |||||||||||||| |||||| Sbjct: 3065642 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 3065691
>dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1178_D01 Length = 121768 Score = 107 bits (54), Expect = 3e-20 Identities = 90/102 (88%) Strand = Plus / Plus Query: 254 ccacgatccggctccacaaggacggcgtgacggccgtcgccctcgcgccgggctccggcg 313 ||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||||||| Sbjct: 85806 ccacgatccggcttcacaaggatggcgtcacggcgctcgccgtcgcgccgggctccggcg 85865 Query: 314 gctcgctcgcgtccggttccatcgaccactcggtcaagttct 355 ||||| |||||||| |||||||| ||||| |||||||||| Sbjct: 85866 cgtcgctggcgtccggctccatcgatcactccgtcaagttct 85907 Score = 77.8 bits (39), Expect = 3e-11 Identities = 93/111 (83%) Strand = Plus / Plus Query: 375 gttccagagcaacgttgcccggttcaccctcccaatccgctcgctggcgttcaacaagaa 434 |||||||||||| | |||||||||||||| || ||||| || ||||| ||||||||||| Sbjct: 86021 gttccagagcaatatcgcccggttcaccctgccgatccggtcactggccttcaacaagaa 86080 Query: 435 gggcgcccttttggccgccgccggcgacgatgacggcatcaagctgattgc 485 ||| | || |||| || ||||| ||||| |||||||||||| ||||||| Sbjct: 86081 ggggactctgctggcggcggccggagacgacgacggcatcaagttgattgc 86131 Score = 73.8 bits (37), Expect = 5e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 154 cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccgccgcg 213 ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||| Sbjct: 85694 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccgctgcg 85753 Query: 214 g 214 | Sbjct: 85754 g 85754 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 62 ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 111 |||||||||| |||||||| ||||| || |||||||||||||| |||||| Sbjct: 85608 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 85657
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 316 tcgctcgcgtccggttccatcgaccactcggtcaagttctactccttcccag 367 ||||| |||||||| |||||||||||||| ||||||||||| || ||||||| Sbjct: 694560 tcgctagcgtccggctccatcgaccactccgtcaagttctattctttcccag 694611 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 tccgccgccgacgtcgccat 191 |||||||||||||||||||| Sbjct: 24153109 tccgccgccgacgtcgccat 24153090 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cctcgcgccgggctccggcg 313 |||||||||||||||||||| Sbjct: 17237928 cctcgcgccgggctccggcg 17237909 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 cgccgccggcgacgatgacg 469 |||||||||||||||||||| Sbjct: 17145060 cgccgccggcgacgatgacg 17145041
>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0041A22, complete sequence Length = 117919 Score = 63.9 bits (32), Expect = 5e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 316 tcgctcgcgtccggttccatcgaccactcggtcaagttctactccttcccag 367 ||||| |||||||| |||||||||||||| ||||||||||| || ||||||| Sbjct: 39759 tcgctagcgtccggctccatcgaccactccgtcaagttctattctttcccag 39810
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Minus Query: 268 cacaaggacggcgtgacggccgtcgccc 295 |||||||||||||||||||||| ||||| Sbjct: 1667384 cacaaggacggcgtgacggccgacgccc 1667357
>ref|XM_359978.1| Magnaporthe grisea 70-15 hypothetical protein (MG05353.4) partial mRNA Length = 1587 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 159 cgtcgtcaccgcgtccgccgccgacgtcgcc 189 |||||||||| ||||||||||||||| |||| Sbjct: 993 cgtcgtcacctcgtccgccgccgacgacgcc 1023
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 167 ccgcgtccgccgccgacgtcgcc 189 ||||||||||||||||||||||| Sbjct: 3002477 ccgcgtccgccgccgacgtcgcc 3002499 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 cgtccgccgccgacgtcgcca 190 ||||||||||||||||||||| Sbjct: 4873585 cgtccgccgccgacgtcgcca 4873605
>ref|XM_472288.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 594 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 297 cgcgccgggctccggcggctcgctcg 322 |||||||||||||||||| ||||||| Sbjct: 315 cgcgccgggctccggcgggtcgctcg 340
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 297 cgcgccgggctccggcggctcgctcg 322 |||||||||||||||||| ||||||| Sbjct: 19127383 cgcgccgggctccggcgggtcgctcg 19127358
>gb|AF329478.1|AF329478 Arthrobacter sp. 1IN sarcosine oxidase operon, partial sequence Length = 5855 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 446 tggccgccgccggcgacgatgacggcatca 475 |||||||||||| ||||||||||| ||||| Sbjct: 124 tggccgccgccgccgacgatgacgacatca 95
>dbj|AK119958.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D01, full insert sequence Length = 1310 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 297 cgcgccgggctccggcggctcgctcg 322 |||||||||||||||||| ||||||| Sbjct: 735 cgcgccgggctccggcgggtcgctcg 760
>gb|U23955.1|CSU23955 Corynebacterium sp. serine hydroxymethyltransferase (glyA) gene, partial cds, sarcosine oxidase beta (soxB), delta (soxD), alpha (soxA), and gamma (soxG) subunit genes, complete cds, and 10-formyltetrahydrofolate hydrolase (purU) gene, complete cds Length = 7285 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 446 tggccgccgccggcgacgatgacggcatca 475 |||||||||||| ||||||||||| ||||| Sbjct: 881 tggccgccgccgccgacgatgacgacatca 852
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 297 cgcgccgggctccggcggctcgctcg 322 |||||||||||||||||| ||||||| Sbjct: 60904 cgcgccgggctccggcgggtcgctcg 60879
>ref|XM_467666.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1888 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 ggccgccgccggcgacgatg 466 |||||||||||||||||||| Sbjct: 43 ggccgccgccggcgacgatg 62
>ref|NM_196907.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0071K18.4), mRNA Length = 783 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gatccacgacgccgccgcgg 214 |||||||||||||||||||| Sbjct: 413 gatccacgacgccgccgcgg 432
>ref|XM_477080.1| Oryza sativa (japonica cultivar-group), mRNA Length = 560 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 448 gccgccgccggcgacgatgacggc 471 ||||||||||||||||| |||||| Sbjct: 79 gccgccgccggcgacgacgacggc 56
>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12, complete sequence Length = 164064 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 cgccgccggcgacgatgacg 469 |||||||||||||||||||| Sbjct: 89195 cgccgccggcgacgatgacg 89176
>gb|AY706589.1| Verticillium dahliae MAP kinase associated pathogenicity-like gene, partial sequence Length = 1216 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 409 atccgctcgctggcgttcaacaagaagg 436 |||||||||||| ||||||| ||||||| Sbjct: 928 atccgctcgctgccgttcaagaagaagg 955
>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03, complete sequence Length = 121466 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 tccgccgccgacgtcgccat 191 |||||||||||||||||||| Sbjct: 39347 tccgccgccgacgtcgccat 39328
>gb|AC135928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0686B10, complete sequence Length = 159672 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cctcgcgccgggctccggcg 313 |||||||||||||||||||| Sbjct: 35240 cctcgcgccgggctccggcg 35221
>ref|XM_417896.1| PREDICTED: Gallus gallus MLL protein (mll), mRNA Length = 12444 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gcgccgggctccggcggctc 317 |||||||||||||||||||| Sbjct: 676 gcgccgggctccggcggctc 695
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 ggccgccgccggcgacgatg 466 |||||||||||||||||||| Sbjct: 892433 ggccgccgccggcgacgatg 892452
>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10, complete sequence Length = 148373 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 cgccgccggcgacgatgacg 469 |||||||||||||||||||| Sbjct: 138427 cgccgccggcgacgatgacg 138408
>gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052B22, complete sequence Length = 156725 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccgccgccgacgtcgccatc 192 |||||||||||||||||||| Sbjct: 101834 ccgccgccgacgtcgccatc 101853
>ref|XM_382169.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01993.1) partial mRNA Length = 1959 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 437 gcgcccttttggccgccgccggcg 460 ||||||||||||||| |||||||| Sbjct: 32 gcgcccttttggccgtcgccggcg 55
>gb|AY258009.2| Streptomyces clavuligerus clavulanic acid biosynthetic gene cluster, partial sequence Length = 13901 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 cgtcaccgcgtccgccgccg 181 |||||||||||||||||||| Sbjct: 6647 cgtcaccgcgtccgccgccg 6666
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ggcgacgatgacggcatcaa 476 |||||||||||||||||||| Sbjct: 1266677 ggcgacgatgacggcatcaa 1266696
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gatccacgacgccgccgcgg 214 |||||||||||||||||||| Sbjct: 42115 gatccacgacgccgccgcgg 42134
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 tggccgccgccggcgacgatgacg 469 |||||||||||| ||||||||||| Sbjct: 1804671 tggccgccgccgacgacgatgacg 1804648
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 ccgcgtccgccgccgacgtcgcca 190 ||||| |||||||||||||||||| Sbjct: 173940 ccgcggccgccgccgacgtcgcca 173963
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 ggccgtcgccacgatccggc 265 |||||||||||||||||||| Sbjct: 90760 ggccgtcgccacgatccggc 90779
>gb|AY034175.1| Streptomyces clavuligerus clavulanic acid gene cluster, partial sequence Length = 12162 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 cgtcaccgcgtccgccgccg 181 |||||||||||||||||||| Sbjct: 8154 cgtcaccgcgtccgccgccg 8173
>gb|DQ397619.1| Cenarchaeum symbiosum clone C11A07, complete sequence Length = 38380 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 cgccgggctccggcggctcg 318 |||||||||||||||||||| Sbjct: 23767 cgccgggctccggcggctcg 23748
>dbj|AB125331.1| Dicologlossa cuneata mitochondrial cytb gene for cytochrome b, complete cds Length = 1141 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 cgccgacgtcgccatcctga 196 |||||||||||||||||||| Sbjct: 987 cgccgacgtcgccatcctga 1006
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 caaggacggcgtgacggccg 289 |||||||||||||||||||| Sbjct: 110729 caaggacggcgtgacggccg 110748
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gtccgccgccgacgtcgcca 190 |||||||||||||||||||| Sbjct: 2558529 gtccgccgccgacgtcgcca 2558510
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 ccgcgtccgccgccgacgtcgcca 190 ||||| |||||||||||||||||| Sbjct: 1228379 ccgcgaccgccgccgacgtcgcca 1228356
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 448 gccgccgccggcgacgatgacggc 471 ||||||||||||||||| |||||| Sbjct: 151251 gccgccgccggcgacgacgacggc 151274
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gtccgccgccgacgtcgcca 190 |||||||||||||||||||| Sbjct: 4041971 gtccgccgccgacgtcgcca 4041952
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccgccgccgacgtcgccatc 192 |||||||||||||||||||| Sbjct: 16786272 ccgccgccgacgtcgccatc 16786291
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gatccacgacgccgccgcgg 214 |||||||||||||||||||| Sbjct: 16618127 gatccacgacgccgccgcgg 16618108
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 448 gccgccgccggcgacgatgacggc 471 ||||||||||||||||| |||||| Sbjct: 5803118 gccgccgccggcgacgacgacggc 5803095
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccgccgccgacgtcgccatc 192 |||||||||||||||||||| Sbjct: 5117204 ccgccgccgacgtcgccatc 5117223
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 ggccgccgccggcgacgatg 466 |||||||||||||||||||| Sbjct: 30713885 ggccgccgccggcgacgatg 30713904
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1119_B04 Length = 151721 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 448 gccgccgccggcgacgatgacggc 471 ||||||||||||||||| |||||| Sbjct: 110146 gccgccgccggcgacgacgacggc 110123
>gb|AY881982.1| Verticillium dahliae mitogen activated protein kinase 1 (k1) gene, complete cds Length = 2289 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 409 atccgctcgctggcgttcaacaagaagg 436 |||||||||||| ||||||| ||||||| Sbjct: 1525 atccgctcgctgccgttcaagaagaagg 1552
>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0487D09 Length = 161531 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 ggccgccgccggcgacgatg 466 |||||||||||||||||||| Sbjct: 54032 ggccgccgccggcgacgatg 54051
>dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1147_D11 Length = 138444 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccgccgccgacgtcgccatc 192 |||||||||||||||||||| Sbjct: 76242 ccgccgccgacgtcgccatc 76261
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1172G12 Length = 171974 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccgccgccgacgtcgccatc 192 |||||||||||||||||||| Sbjct: 159318 ccgccgccgacgtcgccatc 159337
>dbj|AK120217.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040N22, full insert sequence Length = 1888 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 ggccgccgccggcgacgatg 466 |||||||||||||||||||| Sbjct: 43 ggccgccgccggcgacgatg 62
>dbj|AK109322.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-H04, full insert sequence Length = 663 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 cgccgccggcgacgatgacg 469 |||||||||||||||||||| Sbjct: 489 cgccgccggcgacgatgacg 508
>dbj|AK109163.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G10, full insert sequence Length = 769 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccgccgccgacgtcgccatc 192 |||||||||||||||||||| Sbjct: 223 ccgccgccgacgtcgccatc 242
>dbj|AK108572.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E11, full insert sequence Length = 711 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cctcgcgccgggctccggcg 313 |||||||||||||||||||| Sbjct: 272 cctcgcgccgggctccggcg 291
>dbj|AK107761.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-A09, full insert sequence Length = 560 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 448 gccgccgccggcgacgatgacggc 471 ||||||||||||||||| |||||| Sbjct: 79 gccgccgccggcgacgacgacggc 56
>dbj|AK100115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006O04, full insert sequence Length = 2501 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 cgccgccggcgacgatgacg 469 |||||||||||||||||||| Sbjct: 76 cgccgccggcgacgatgacg 57
>dbj|AK068341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K10, full insert sequence Length = 2132 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccgccgccgacgtcgccatc 192 |||||||||||||||||||| Sbjct: 38 ccgccgccgacgtcgccatc 57
>gb|AY105796.1| Zea mays PCO081368 mRNA sequence Length = 544 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 gcgcacaaggcgggctcgggctcc 117 ||||||||||||| |||||||||| Sbjct: 86 gcgcacaaggcggcctcgggctcc 109
>gb|AY874359.1| Verticillium dahliae mitogen-activated protein kinase (vmk1) gene, complete cds Length = 2815 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 409 atccgctcgctggcgttcaacaagaagg 436 |||||||||||| ||||||| ||||||| Sbjct: 2005 atccgctcgctgccgttcaagaagaagg 2032
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gatccacgacgccgccgcgg 214 |||||||||||||||||||| Sbjct: 16626368 gatccacgacgccgccgcgg 16626349
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccgccgccgacgtcgccatc 192 |||||||||||||||||||| Sbjct: 16880042 ccgccgccgacgtcgccatc 16880061
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gtccgccgccgacgtcgcca 190 |||||||||||||||||||| Sbjct: 4041958 gtccgccgccgacgtcgcca 4041939
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gtccgccgccgacgtcgcca 190 |||||||||||||||||||| Sbjct: 78392 gtccgccgccgacgtcgcca 78373 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,857,931 Number of Sequences: 3902068 Number of extensions: 2857931 Number of successful extensions: 73710 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70712 Number of HSP's gapped (non-prelim): 2995 length of query: 497 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 475 effective length of database: 17,147,199,772 effective search space: 8144919891700 effective search space used: 8144919891700 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
