ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl21h12 |
|---|---|
| Clone Library Name | barley_pub |
>GCNL2_MOUSE (Q9JHD2) General control of amino acid synthesis protein 5-like 2| (EC 2.3.1.48) (Histone acetyltransferase GCN5) (mmGCN5) Length = 830 Score = 31.2 bits (69), Expect = 0.74 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%) Frame = -1 Query: 248 PQPNHTWCGSE*AGTRPSRGACPASSPSQSPWVGFRS------CGSERSRPKNAQSTWMG 87 P P T S + + P+ PA +P+ +P S G + +RP +Q Sbjct: 24 PAPTSTPAPSPASASTPAPTPAPAPAPAAAPAGSTGSGGAGVGSGGDPARPGLSQQQRAS 83 Query: 86 REQEQVRGFGRSKKKE 39 + + QVRG R+KK E Sbjct: 84 QRKAQVRGLPRAKKLE 99
>GCNL2_HUMAN (Q92830) General control of amino acid synthesis protein 5-like 2| (EC 2.3.1.48) (Histone acetyltransferase GCN5) (hsGCN5) (STAF97) Length = 837 Score = 30.4 bits (67), Expect = 1.3 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%) Frame = -1 Query: 200 PSRGACPASSPSQS-----PWVGFRSCGS--ERSRPKNAQSTWMGREQEQVRGFGRSKKK 42 P+ PA++P+ S P VG GS + +RP +Q + + QVRG R+KK Sbjct: 44 PAPAPAPAAAPAGSTGTGGPGVGSGGAGSGGDPARPGLSQQQRASQRKAQVRGLPRAKKL 103 Query: 41 E 39 E Sbjct: 104 E 104
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/40 (37%), Positives = 18/40 (45%) Frame = +1 Query: 115 GLDLSLPQDLNPTHGDCDGDEAGHAPRLGRVPAHSDPHQV 234 G +L D + + DCD DE G A G H D H V Sbjct: 264 GAELDDSSDYHEENEDCDSDEGGSAGGGGGGSNHMDDHSV 303
>HORN_MOUSE (Q8VHD8) Hornerin| Length = 2496 Score = 29.3 bits (64), Expect = 2.8 Identities = 21/63 (33%), Positives = 27/63 (42%) Frame = -1 Query: 209 GTRPSRGACPASSPSQSPWVGFRSCGSERSRPKNAQSTWMGREQEQVRGFGRSKKKENST 30 G G C ASS S CGS++S Q + G + GRS +E+ST Sbjct: 1785 GQASGSGRCGASSGQTS------GCGSDQSTRYGEQGS--GSRNSSTQSRGRSTSRESST 1836 Query: 29 SLR 21 S R Sbjct: 1837 SQR 1839 Score = 27.7 bits (60), Expect = 8.2 Identities = 21/63 (33%), Positives = 26/63 (41%) Frame = -1 Query: 209 GTRPSRGACPASSPSQSPWVGFRSCGSERSRPKNAQSTWMGREQEQVRGFGRSKKKENST 30 G G C ASS S CGS +S Q + G + GRS +E+ST Sbjct: 2133 GQASGSGRCGASSGQTS------GCGSGQSTRYGEQGS--GSRNSSTQSRGRSTSRESST 2184 Query: 29 SLR 21 S R Sbjct: 2185 SQR 2187 Score = 27.7 bits (60), Expect = 8.2 Identities = 21/63 (33%), Positives = 26/63 (41%) Frame = -1 Query: 209 GTRPSRGACPASSPSQSPWVGFRSCGSERSRPKNAQSTWMGREQEQVRGFGRSKKKENST 30 G G C ASS S CGS +S Q + G + GRS +E+ST Sbjct: 1437 GQASGSGRCGASSGQTS------GCGSGQSTRYGEQGS--GSRNSSTQSRGRSTSRESST 1488 Query: 29 SLR 21 S R Sbjct: 1489 SQR 1491 Score = 27.7 bits (60), Expect = 8.2 Identities = 21/63 (33%), Positives = 26/63 (41%) Frame = -1 Query: 209 GTRPSRGACPASSPSQSPWVGFRSCGSERSRPKNAQSTWMGREQEQVRGFGRSKKKENST 30 G G C ASS S CGS +S Q + G + GRS +E+ST Sbjct: 1089 GQASGSGRCGASSGQTS------GCGSGQSTRYGEQGS--GSRNSSTQSRGRSTSRESST 1140 Query: 29 SLR 21 S R Sbjct: 1141 SQR 1143 Score = 27.7 bits (60), Expect = 8.2 Identities = 21/63 (33%), Positives = 26/63 (41%) Frame = -1 Query: 209 GTRPSRGACPASSPSQSPWVGFRSCGSERSRPKNAQSTWMGREQEQVRGFGRSKKKENST 30 G G C ASS S CGS +S Q + G + GRS +E+ST Sbjct: 740 GQASGSGRCGASSGQTS------GCGSGQSTRYGEQGS--GSRNSSTQSRGRSTSRESST 791 Query: 29 SLR 21 S R Sbjct: 792 SQR 794
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -1 Query: 125 RSRPKNAQSTWMGREQEQVRGFGRSKKKENSTSLRKRNP 9 RSR K+ +S G +++ G + KKKE++ + R+P Sbjct: 369 RSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSP 407
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 28.1 bits (61), Expect = 6.3 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = -1 Query: 203 RPSRGACPASSPSQSPWVGFRSCGSERSRPKNAQSTWMGREQEQVRGFGRSKKKENSTSL 24 R SR P S +SP RS GS+RS K+ ++ R ++ R +S+ + Sbjct: 196 RRSRSRSPTRS--RSPPARRRSPGSDRSDRKSRSASPKKRSDKRARSESKSRSRSGGRRS 253 Query: 23 RKRNP 9 R +P Sbjct: 254 RSNSP 258
>CHEA_TREPA (P96123) Chemotaxis protein cheA (EC 2.7.13.3)| Length = 812 Score = 27.7 bits (60), Expect = 8.2 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 115 GLDLSLPQDLNPTHGDCDGDEAGHAPRLGRVP 210 GL +S P G G++ AP++GRVP Sbjct: 144 GLSVSSPNAAEAAKGTAVGEDGTEAPQVGRVP 175
>RW1_HUMAN (Q92545) RW1 protein (Fragment)| Length = 1805 Score = 27.7 bits (60), Expect = 8.2 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 5/85 (5%) Frame = -1 Query: 242 PNHT--WCGSE*AGTRPSRGACPASSPSQSPWVGF---RSCGSERSRPKNAQSTWMGREQ 78 P H+ +CG+ + +RPS G+ PS P S E R KN+ ST Sbjct: 1112 PGHSRGFCGAGGSSSRPSAGSHKQCGPSVHPHSSHSNRNSADVENVRAKNSSST------ 1165 Query: 77 EQVRGFGRSKKKENSTSLRKRNPLV 3 S + +S S K +PLV Sbjct: 1166 ----SSRTSAQAASSQSANKTSPLV 1186
>LIPB_HAEIN (P44464) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier| protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) Length = 212 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +1 Query: 67 RTCSCSLPIQVD*AFFGLDLSLPQDLNPTH 156 + CS L I+ +F GL L++ DLNP H Sbjct: 135 KICSLGLRIRRGCSFHGLALNINMDLNPFH 164
>LIPB_HAEI8 (Q4QPL7) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier| protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) Length = 212 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +1 Query: 67 RTCSCSLPIQVD*AFFGLDLSLPQDLNPTH 156 + CS L I+ +F GL L++ DLNP H Sbjct: 135 KICSLGLRIRRGCSFHGLALNINMDLNPFH 164
>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 27.7 bits (60), Expect = 8.2 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = -1 Query: 209 GTRPSRGACPASSPSQSPWVGFRSCGSERSRPKNAQSTWMGREQEQVRGFGR--SKKKEN 36 GT PS + P +SP QSP V S S RP A S G Q + +K++ Sbjct: 1039 GTSPS--SSPRTSPCQSPTVPEYSAPSLPIRPSRAPSRTPGPPSSQGSPVDTQPAAQKDS 1096 Query: 35 STSLRKRNP 9 S +L + P Sbjct: 1097 SQTLEPKRP 1105 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,799,723 Number of Sequences: 219361 Number of extensions: 565359 Number of successful extensions: 1860 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1804 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1860 length of database: 80,573,946 effective HSP length: 58 effective length of database: 67,851,008 effective search space used: 1628424192 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
