ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470513.1| Oryza sativa (japonica cultivar-group), mRNA 62 9e-07
2dbj|AK100706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 9e-07
3ref|XM_477896.1| Oryza sativa (japonica cultivar-group), mRNA 52 8e-04
4dbj|AK074000.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
6dbj|AP005444.4| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
7dbj|AP004395.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
8gb|AC013434.8|AC013434 Homo sapiens chromosome 7 clone RP11-192D... 48 0.013
9emb|BX663519.12| Zebrafish DNA sequence from clone DKEY-182M1 in... 46 0.052
10dbj|AK107130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.052
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.20
12emb|AL450328.6| Human DNA sequence from clone RP11-193H22 on chr... 44 0.20
13gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genom... 44 0.20
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.20
15gb|AC005070.1|AC005070 Homo sapiens BAC clone CTB-152G17 from 7q... 44 0.20
16gb|AC161269.4| Mus musculus BAC clone RP23-120K16 from chromosom... 42 0.81
17gb|AC121860.4| Mus musculus BAC clone RP24-105K16 from chromosom... 42 0.81
18gb|AC146089.2| Pan troglodytes BAC clone RP43-47D18 from 7, comp... 42 0.81
19gb|AC098566.3| Oryza sativa chromosome 10 clone OSJNBa0051J07, c... 42 0.81
20dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.81
21gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.81
22emb|AL672004.12| Mouse DNA sequence from clone RP23-200C21 on ch... 42 0.81
23ref|NM_191566.1| Oryza sativa (japonica cultivar-group), predic... 40 3.2
24gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, compl... 40 3.2
25gb|AC113060.11| Mus musculus chromosome 13, clone RP23-255E18, c... 40 3.2
26ref|XM_360215.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 3.2
27gb|AC147252.4| Mus musculus BAC clone RP24-116A5 from chromosome... 40 3.2
28gb|AC158520.2| Mus musculus BAC clone RP23-434P22 from chromosom... 40 3.2
29gb|AC133451.14| Mus musculus chromosome 19, clone RP24-91H12, co... 40 3.2
30gb|AC118704.17| Mus musculus chromosome 13, clone RP24-114K21, c... 40 3.2
31gb|AC134567.4| Mus musculus BAC clone RP24-199C24 from chromosom... 40 3.2
32gb|AC122525.4| Mus musculus BAC clone RP24-496O17 from chromosom... 40 3.2
33ref|XM_849707.1| PREDICTED: Canis familiaris similar to Neurotro... 40 3.2
34gb|AC110574.9| Mus musculus chromosome 3, clone RP23-324B15, com... 40 3.2
35emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chr... 40 3.2
36emb|AL512595.14| Human DNA sequence from clone RP11-172C24 on ch... 40 3.2
37emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 40 3.2
38emb|AL669903.16| Mouse DNA sequence from clone RP23-72A14 on chr... 40 3.2
39gb|AE014174.1| Mus musculus piebald deletion region section 2 of... 40 3.2
40gb|AC005499.3| Arabidopsis thaliana chromosome 2 clone T6A23 map... 40 3.2
41gb|AC004684.3| Arabidopsis thaliana chromosome 2 clone F13M22 ma... 40 3.2
42gb|AC004683.3| Arabidopsis thaliana chromosome 2 clone T19C21 ma... 40 3.2
43dbj|AK140107.1| Mus musculus adult male corpora quadrigemina cDN... 40 3.2
44dbj|AK158625.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 40 3.2
45gb|AY857473.1| Suberites domuncula S15a mRNA, complete cds 40 3.2
46dbj|AK169501.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 3.2
47gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 3.2
48dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
49gb|AC112907.7| Homo sapiens 3 BAC RP11-573D15 (Roswell Park Canc... 40 3.2
50dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
51gb|AC025164.37| Homo sapiens 12 BAC RP11-796E2 (Roswell Park Can... 40 3.2
52dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 3.2
53dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 3.2
54emb|BX322545.6| Mouse DNA sequence from clone RP23-74N4 on chrom... 40 3.2
55emb|BX284750.1|NCB17B1 Neurospora crassa DNA linkage group II BA... 40 3.2
56gb|AC006199.1|AC006199 Homo sapiens, clone hRPK.13_A_1, complete... 40 3.2
57gb|AC139846.4| Mus musculus BAC clone RP23-385F3 from 8, complet... 40 3.2
58emb|CT009530.5| Mouse DNA sequence from clone RP23-33O7 on chrom... 40 3.2
59emb|AL691444.9| Mouse DNA sequence from clone RP23-224E21 on chr... 40 3.2 
>ref|XM_470513.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3810

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 173 atgaggccggacacgcgcctcgactcggccgcgttccagctcactccgacccgcaccagg 232
           ||||||||||| ||||| || || || || | |||||||||||| || |||||||| |||
Sbjct: 1   atgaggccggagacgcggcttgattcagcggtgttccagctcacccccacccgcacaagg 60

                          
Query: 233 tgtgatttggttgtg 247
           |||||||| ||||||
Sbjct: 61  tgtgatttagttgtg 75
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>dbj|AK100706.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115B06, full
           insert sequence
          Length = 4301

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 173 atgaggccggacacgcgcctcgactcggccgcgttccagctcactccgacccgcaccagg 232
           ||||||||||| ||||| || || || || | |||||||||||| || |||||||| |||
Sbjct: 271 atgaggccggagacgcggcttgattcagcggtgttccagctcacccccacccgcacaagg 330

                          
Query: 233 tgtgatttggttgtg 247
           |||||||| ||||||
Sbjct: 331 tgtgatttagttgtg 345
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>ref|XM_477896.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3628

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 198 cggccgcgttccagctcactccgacccgcaccaggtgtgatttggt 243
           |||||| |||||||||||| |||||||| |||||||  ||||||||
Sbjct: 528 cggccgtgttccagctcaccccgacccggaccaggttcgatttggt 573
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>dbj|AK074000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073D02, full
           insert sequence
          Length = 3630

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 198 cggccgcgttccagctcactccgacccgcaccaggtgtgatttggt 243
           |||||| |||||||||||| |||||||| |||||||  ||||||||
Sbjct: 528 cggccgtgttccagctcaccccgacccggaccaggttcgatttggt 573
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 198      cggccgcgttccagctcactccgacccgcaccaggtg 234
                |||||| |||||||||||| |||||||| ||||||||
Sbjct: 15157366 cggccgtgttccagctcaccccgacccggaccaggtg 15157330
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>dbj|AP005444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0011H01
          Length = 165634

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 198    cggccgcgttccagctcactccgacccgcaccaggtg 234
              |||||| |||||||||||| |||||||| ||||||||
Sbjct: 163270 cggccgtgttccagctcaccccgacccggaccaggtg 163234
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>dbj|AP004395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0030H06
          Length = 147890

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 198   cggccgcgttccagctcactccgacccgcaccaggtg 234
             |||||| |||||||||||| |||||||| ||||||||
Sbjct: 24115 cggccgtgttccagctcaccccgacccggaccaggtg 24079
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>gb|AC013434.8|AC013434 Homo sapiens chromosome 7 clone RP11-192D18, complete sequence
          Length = 149103

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 12    atttctcttccgcaaacttgttgaattt 39
             ||||||||||| ||||||||||||||||
Sbjct: 70390 atttctcttcctcaaacttgttgaattt 70363
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>emb|BX663519.12| Zebrafish DNA sequence from clone DKEY-182M1 in linkage group 15,
            complete sequence
          Length = 164720

 Score = 46.1 bits (23), Expect = 0.052
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 24   caaacttgttgaattttctttcttctt 50
            |||||||||| ||||||||||||||||
Sbjct: 7243 caaacttgttaaattttctttcttctt 7217
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>dbj|AK107130.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C04, full
           insert sequence
          Length = 3008

 Score = 46.1 bits (23), Expect = 0.052
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 198 cggccgcgttccagctcactccgacccgcaccagg 232
           |||||| |||||||||||| |||||||| ||||||
Sbjct: 504 cggccgtgttccagctcaccccgacccggaccagg 538
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                            
Query: 173      atgaggccggacacgcgcctcgactcggccgcgttccagctcactccgacccgcaccagg 232
                ||||||||||| ||||| || || || || | |||||||||||| || |||||||| |||
Sbjct: 36044224 atgaggccggagacgcggcttgattcagcggtgttccagctcacccccacccgcacaagg 36044283

                  
Query: 233      tg 234
                ||
Sbjct: 36044284 tg 36044285
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>emb|AL450328.6| Human DNA sequence from clone RP11-193H22 on chromosome 6, complete
             sequence
          Length = 119389

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 41    ctttcttcttgcttctcccaaa 62
             ||||||||||||||||||||||
Sbjct: 32220 ctttcttcttgcttctcccaaa 32241
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>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete
              sequence
          Length = 164179

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                          
Query: 173    atgaggccggacacgcgcctcgactcggccgcgttccagctcactccgacccgcaccagg 232
              ||||||||||| ||||| || || || || | |||||||||||| || |||||||| |||
Sbjct: 105735 atgaggccggagacgcggcttgattcagcggtgttccagctcacccccacccgcacaagg 105794

                
Query: 233    tg 234
              ||
Sbjct: 105795 tg 105796
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                            
Query: 173      atgaggccggacacgcgcctcgactcggccgcgttccagctcactccgacccgcaccagg 232
                ||||||||||| ||||| || || || || | |||||||||||| || |||||||| |||
Sbjct: 36134298 atgaggccggagacgcggcttgattcagcggtgttccagctcacccccacccgcacaagg 36134357

                  
Query: 233      tg 234
                ||
Sbjct: 36134358 tg 36134359
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>gb|AC005070.1|AC005070 Homo sapiens BAC clone CTB-152G17 from 7q22-q31.1, complete sequence
          Length = 113033

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 33     tgaattttctttcttcttgctt 54
              ||||||||||||||||||||||
Sbjct: 111869 tgaattttctttcttcttgctt 111848
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>gb|AC161269.4| Mus musculus BAC clone RP23-120K16 from chromosome 15, complete sequence
          Length = 206234

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 38     tttctttcttcttgcttctcc 58
              |||||||||||||||||||||
Sbjct: 180826 tttctttcttcttgcttctcc 180846
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>gb|AC121860.4| Mus musculus BAC clone RP24-105K16 from chromosome 15, complete
             sequence
          Length = 148328

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 38    tttctttcttcttgcttctcc 58
             |||||||||||||||||||||
Sbjct: 69535 tttctttcttcttgcttctcc 69555
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>gb|AC146089.2| Pan troglodytes BAC clone RP43-47D18 from 7, complete sequence
          Length = 178573

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 15    tctcttccgcaaacttgttgaattt 39
             |||||||| ||||||||||||||||
Sbjct: 73371 tctcttcctcaaacttgttgaattt 73395
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>gb|AC098566.3| Oryza sativa chromosome 10 clone OSJNBa0051J07, complete sequence
          Length = 148301

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 37    ttttctttcttcttgcttctc 57
             |||||||||||||||||||||
Sbjct: 45748 ttttctttcttcttgcttctc 45728
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 37      ttttctttcttcttgcttctc 57
               |||||||||||||||||||||
Sbjct: 4898827 ttttctttcttcttgcttctc 4898807
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 37      ttttctttcttcttgcttctc 57
               |||||||||||||||||||||
Sbjct: 4899614 ttttctttcttcttgcttctc 4899594
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>emb|AL672004.12| Mouse DNA sequence from clone RP23-200C21 on chromosome 11, complete
             sequence
          Length = 101730

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    ttttctttcttcttgcttctc 57
             |||||||||||||||||||||
Sbjct: 31765 ttttctttcttcttgcttctc 31785
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>ref|NM_191566.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 492

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 153 ccacggcgactgcgacggcg 172
           ||||||||||||||||||||
Sbjct: 368 ccacggcgactgcgacggcg 349
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>gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, complete sequence
          Length = 198404

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    ttgaattttctttcttcttg 51
             ||||||||||||||||||||
Sbjct: 15963 ttgaattttctttcttcttg 15982
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>gb|AC113060.11| Mus musculus chromosome 13, clone RP23-255E18, complete sequence
          Length = 192264

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    aattttctttcttcttgctt 54
             ||||||||||||||||||||
Sbjct: 52320 aattttctttcttcttgctt 52339
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>ref|XM_360215.1| Magnaporthe grisea 70-15 hypothetical protein (MG05589.4) partial
           mRNA
          Length = 7218

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 185 acgcgcctcgactcggccgcgttccagc 212
           |||||| ||||| |||||||||||||||
Sbjct: 619 acgcgcttcgacccggccgcgttccagc 646
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>gb|AC147252.4| Mus musculus BAC clone RP24-116A5 from chromosome Y, complete sequence
          Length = 197602

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 35    aattttctttcttcttgcttctcc 58
             |||||||||||||||| |||||||
Sbjct: 45856 aattttctttcttctttcttctcc 45879
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>gb|AC158520.2| Mus musculus BAC clone RP23-434P22 from chromosome 14, complete
             sequence
          Length = 201291

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    cttgttgaattttctttctt 47
             ||||||||||||||||||||
Sbjct: 46515 cttgttgaattttctttctt 46496
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>gb|AC133451.14| Mus musculus chromosome 19, clone RP24-91H12, complete sequence
          Length = 184265

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    aattttctttcttcttgctt 54
             ||||||||||||||||||||
Sbjct: 79144 aattttctttcttcttgctt 79125
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>gb|AC118704.17| Mus musculus chromosome 13, clone RP24-114K21, complete sequence
          Length = 197574

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    aattttctttcttcttgctt 54
             ||||||||||||||||||||
Sbjct: 12665 aattttctttcttcttgctt 12646
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>gb|AC134567.4| Mus musculus BAC clone RP24-199C24 from chromosome Y, complete sequence
          Length = 163892

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 35     aattttctttcttcttgcttctcc 58
              |||||||||||||||| |||||||
Sbjct: 116868 aattttctttcttctttcttctcc 116845
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>gb|AC122525.4| Mus musculus BAC clone RP24-496O17 from chromosome 9, complete sequence
          Length = 196461

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    ttttctttcttcttgcttct 56
             ||||||||||||||||||||
Sbjct: 50636 ttttctttcttcttgcttct 50617
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>ref|XM_849707.1| PREDICTED: Canis familiaris similar to Neurotrophin-5 precursor
          (NT-5) (Neutrophic factor 5) (Neurotrophin-4) (NT-4)
          (Neutrophic factor 4) (LOC611987), mRNA
          Length = 672

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 75 ctcctgctccctccccatcc 94
          ||||||||||||||||||||
Sbjct: 54 ctcctgctccctccccatcc 73
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>gb|AC110574.9| Mus musculus chromosome 3, clone RP23-324B15, complete sequence
          Length = 196451

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     ttgaattttctttcttcttg 51
              ||||||||||||||||||||
Sbjct: 156440 ttgaattttctttcttcttg 156459
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>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the
              HHEX gene for hematopoietically expressed homeobox, the 5'
              end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a
              eukaryotic translation initiation factor 2 subunit 2
              (eIF-2-beta) pseudogene and four CpG islands, complete
              sequence
          Length = 190144

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    tgagcattttttggtctaga 122
              ||||||||||||||||||||
Sbjct: 163694 tgagcattttttggtctaga 163713
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>emb|AL512595.14| Human DNA sequence from clone RP11-172C24 on chromosome 10 Contains the
             5' end of a gene for cellular modulator of immune
             recognition (c-MIR)and one CpG island, complete sequence
          Length = 80779

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    ttgaattttctttcttcttg 51
             ||||||||||||||||||||
Sbjct: 60430 ttgaattttctttcttcttg 60411
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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 35      aattttctttcttcttgctt 54
               ||||||||||||||||||||
Sbjct: 1976297 aattttctttcttcttgctt 1976278
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>emb|AL669903.16| Mouse DNA sequence from clone RP23-72A14 on chromosome 11 Contains a CpG
              island, complete sequence
          Length = 208028

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     aattttctttcttcttgctt 54
              ||||||||||||||||||||
Sbjct: 139204 aattttctttcttcttgctt 139223
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>gb|AE014174.1| Mus musculus piebald deletion region section 2 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     cttgttgaattttctttctt 47
              ||||||||||||||||||||
Sbjct: 188517 cttgttgaattttctttctt 188498
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>gb|AC005499.3| Arabidopsis thaliana chromosome 2 clone T6A23 map ve018, complete
             sequence
          Length = 107541

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 28    cttgttgaattttctttcttcttg 51
             |||||||| |||||||||||||||
Sbjct: 98020 cttgttgatttttctttcttcttg 98043
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>gb|AC004684.3| Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete
            sequence
          Length = 93845

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 27   acttgttgaattttctttcttctt 50
            |||||||||||||||||| |||||
Sbjct: 8985 acttgttgaattttcttttttctt 8962
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>gb|AC004683.3| Arabidopsis thaliana chromosome 2 clone T19C21 map ve018, complete
            sequence
          Length = 81467

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 28   cttgttgaattttctttcttcttg 51
            |||||||| |||||||||||||||
Sbjct: 2144 cttgttgatttttctttcttcttg 2167
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>dbj|AK140107.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230215J12 product:hypothetical
            protein, full insert sequence
          Length = 1727

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   ttgaattttctttcttcttg 51
            ||||||||||||||||||||
Sbjct: 1228 ttgaattttctttcttcttg 1209
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>dbj|AK158625.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library,
            clone:K230031K21 product:unclassifiable, full insert
            sequence
          Length = 2131

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   aattttctttcttcttgctt 54
            ||||||||||||||||||||
Sbjct: 1552 aattttctttcttcttgctt 1571
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>gb|AY857473.1| Suberites domuncula S15a mRNA, complete cds
          Length = 393

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  ttttctttcttcttgcttct 56
           ||||||||||||||||||||
Sbjct: 361 ttttctttcttcttgcttct 342
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>dbj|AK169501.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630052I23 product:hypothetical protein,
            full insert sequence
          Length = 1720

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   ttgaattttctttcttcttg 51
            ||||||||||||||||||||
Sbjct: 1221 ttgaattttctttcttcttg 1202
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     aattttctttcttcttgctt 54
              ||||||||||||||||||||
Sbjct: 512458 aattttctttcttcttgctt 512439
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 153      ccacggcgactgcgacggcg 172
                ||||||||||||||||||||
Sbjct: 30681397 ccacggcgactgcgacggcg 30681416
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>gb|AC112907.7| Homo sapiens 3 BAC RP11-573D15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 132875

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 68    gcacttgctcctgctccctccccatcca 95
             ||||| |||||||||||||| |||||||
Sbjct: 31826 gcactggctcctgctccctcaccatcca 31853
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>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1060H01
          Length = 157987

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    ccacggcgactgcgacggcg 172
              ||||||||||||||||||||
Sbjct: 123674 ccacggcgactgcgacggcg 123693
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>gb|AC025164.37| Homo sapiens 12 BAC RP11-796E2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 216841

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    aacttgttgaattttctttc 45
             ||||||||||||||||||||
Sbjct: 61723 aacttgttgaattttctttc 61704
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 65      cccgcacttgctcctgctcc 84
               ||||||||||||||||||||
Sbjct: 5008308 cccgcacttgctcctgctcc 5008327
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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 35      aattttctttcttcttgctt 54
               ||||||||||||||||||||
Sbjct: 1959541 aattttctttcttcttgctt 1959522
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>emb|BX322545.6| Mouse DNA sequence from clone RP23-74N4 on chromosome 2, complete
             sequence
          Length = 48866

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    cttgttgaattttctttctt 47
             ||||||||||||||||||||
Sbjct: 10451 cttgttgaattttctttctt 10470
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>emb|BX284750.1|NCB17B1 Neurospora crassa DNA linkage group II BAC clone B17B1
          Length = 102737

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 156   cggcgactgcgacggcgatgaggc 179
             ||||||| ||||||||||||||||
Sbjct: 49457 cggcgacagcgacggcgatgaggc 49434
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>gb|AC006199.1|AC006199 Homo sapiens, clone hRPK.13_A_1, complete sequence
          Length = 164682

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    tttctttcttcttgcttctc 57
             ||||||||||||||||||||
Sbjct: 40035 tttctttcttcttgcttctc 40054
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>gb|AC139846.4| Mus musculus BAC clone RP23-385F3 from 8, complete sequence
          Length = 191571

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     acttgttgaattttctttct 46
              ||||||||||||||||||||
Sbjct: 110406 acttgttgaattttctttct 110425
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>emb|CT009530.5| Mouse DNA sequence from clone RP23-33O7 on chromosome 14, complete
             sequence
          Length = 188700

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    cttgttgaattttctttctt 47
             ||||||||||||||||||||
Sbjct: 67435 cttgttgaattttctttctt 67454
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>emb|AL691444.9| Mouse DNA sequence from clone RP23-224E21 on chromosome 2, complete
             sequence
          Length = 182726

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    tctttcttcttgcttctccc 59
             ||||||||||||||||||||
Sbjct: 98448 tctttcttcttgcttctccc 98429


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,780,368
Number of Sequences: 3902068
Number of extensions: 2780368
Number of successful extensions: 73446
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73239
Number of HSP's gapped (non-prelim): 207
length of query: 248
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 226
effective length of database: 17,147,199,772
effective search space: 3875267148472
effective search space used: 3875267148472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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