ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL122004.17|HSJ678E16 Human DNA sequence from clone RP4-678E... 44 0.36
2gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 44 0.36
3emb|BX001042.4| Zebrafish DNA sequence from clone CH211-146D6, c... 44 0.36
4emb|BX649363.11| Zebrafish DNA sequence from clone CH211-13C3 in... 42 1.4
5dbj|AK132259.1| Mus musculus 18 days pregnant adult female place... 42 1.4
6dbj|AP002052.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 1.4
7emb|AL604023.12| Mouse DNA sequence from clone RP23-468D17 on ch... 42 1.4
8gb|AC118934.9| Mus musculus chromosome 19, clone RP24-172J14, co... 40 5.6
9gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 5.6
10gb|AY659235.1| Synthetic construct Peudomonas aeruginosa clone F... 40 5.6
11gb|AE009095.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 5.6
12ref|XM_756060.1| Ustilago maydis 521 hypothetical protein (UM050... 40 5.6
13emb|CR450794.8| Zebrafish DNA sequence from clone CH211-259I2 in... 40 5.6
14emb|BX005408.12| Zebrafish DNA sequence from clone DKEY-156H23 i... 40 5.6
15emb|CR847897.15| Zebrafish DNA sequence from clone DKEY-90L8 in ... 40 5.6
16emb|AL590105.19| Human DNA sequence from clone RP11-273H7 on chr... 40 5.6
17emb|AL356862.10| Human DNA sequence from clone RP11-1M19 on chro... 40 5.6
18emb|AL078596.8|HSDJ429G5 Human DNA sequence from clone RP3-429G5... 40 5.6
19emb|CR392033.5| Zebrafish DNA sequence from clone DKEY-122A22 in... 40 5.6
20emb|CR394554.6| Zebrafish DNA sequence from clone CH211-113B13 i... 40 5.6
21emb|CR788247.9| Zebrafish DNA sequence from clone DKEY-47M24 in ... 40 5.6
22emb|CR354598.7| Zebrafish DNA sequence from clone CH211-198K18 i... 40 5.6
23emb|BX927297.12| Zebrafish DNA sequence from clone DKEY-238M4 in... 40 5.6
24emb|BX000486.13| Zebrafish DNA sequence from clone DKEY-149M16 i... 40 5.6
25emb|BX950871.13| Zebrafish DNA sequence from clone CH211-105C13 ... 40 5.6
26gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 5.6
27gb|AC157522.2| Pan troglodytes BAC clone CH251-520I13 from chrom... 40 5.6
28gb|AC161470.3| Gallus gallus BAC clone CH261-85J8 from chromosom... 40 5.6
29emb|CR391943.6| Zebrafish DNA sequence from clone DKEY-15M21 in ... 40 5.6
30emb|BX649371.6| Zebrafish DNA sequence from clone CH211-163G19 i... 40 5.6
31emb|BX649508.10| Zebrafish DNA sequence from clone DKEY-31M5 in ... 40 5.6
32emb|BX324110.10| Zebrafish DNA sequence from clone DKEY-250F19 i... 40 5.6
33emb|BX548002.12| Zebrafish DNA sequence from clone CH211-170I2 i... 40 5.6
34dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
35gb|AC093760.3| Homo sapiens BAC clone RP11-77N9 from 4, complete... 40 5.6
36gb|AE004693.1| Pseudomonas aeruginosa PAO1, section 254 of 529 o... 40 5.6
37emb|AL954683.11| Zebrafish DNA sequence from clone DKEY-49K10 in... 40 5.6
38dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
39emb|AL645689.11| Zebrafish DNA sequence from clone XX-BAC7CSE, c... 40 5.6
40emb|CR354581.11| Zebrafish DNA sequence from clone CH211-231O17 ... 40 5.6
41emb|CR388140.8| Zebrafish DNA sequence from clone CH211-190G11, ... 40 5.6
42gb|AC116863.6| Mus musculus chromosome 19, clone RP24-408G9, com... 40 5.6
43emb|AL929582.10| Zebrafish DNA sequence from clone CH211-117M12,... 40 5.6
44emb|AL773598.5| Zebrafish DNA sequence from clone CH211-207G4, c... 40 5.6
45emb|BX000481.5| Zebrafish DNA sequence from clone CH211-13A4 in ... 40 5.6
46emb|AL954699.4| Zebrafish DNA sequence from clone CH211-264H3 in... 40 5.6
47emb|CR385076.9| Zebrafish DNA sequence from clone DKEY-230H18 in... 40 5.6
48gb|U04732.1|PPU04732 Porphyra purpurea Avonport clone 26d12 spor... 40 5.6 
>emb|AL122004.17|HSJ678E16 Human DNA sequence from clone RP4-678E16 on chromosome 1p32.3-34.2
             Contains the 3' end of the gene for a novel protein
             (FLJ31862, FLJ22091, FLJ10597), the gene for a novel
             DUF829 domain-containing protein, two novel genes and four
             CpG islands, complete sequence
          Length = 107037

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 169   aggatctctcccactccaatcc 190
             ||||||||||||||||||||||
Sbjct: 63029 aggatctctcccactccaatcc 63050
to top
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 260     aaaacctgaggatctgcgagat 281
               ||||||||||||||||||||||
Sbjct: 3716878 aaaacctgaggatctgcgagat 3716857
to top
>emb|BX001042.4| Zebrafish DNA sequence from clone CH211-146D6, complete sequence
          Length = 168195

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 147   aggcccttcttgctgcaaccca 168
             ||||||||||||||||||||||
Sbjct: 65681 aggcccttcttgctgcaaccca 65660
to top
>emb|BX649363.11| Zebrafish DNA sequence from clone CH211-13C3 in linkage group 21,
              complete sequence
          Length = 196451

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 149    gcccttcttgctgcaacccaa 169
              |||||||||||||||||||||
Sbjct: 140653 gcccttcttgctgcaacccaa 140633
to top
>dbj|AK132259.1| Mus musculus 18 days pregnant adult female placenta and extra
           embryonic tissue cDNA, RIKEN full-length enriched
           library, clone:3830406K03 product:hypothetical protein,
           full insert sequence
          Length = 1959

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 aacccaaggatctctcccact 183
           |||||||||||||||||||||
Sbjct: 977 aacccaaggatctctcccact 997
to top
>dbj|AP002052.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T13J10
          Length = 46739

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 81    cgtcgccttcgccatcgtcgt 101
             |||||||||||||||||||||
Sbjct: 20239 cgtcgccttcgccatcgtcgt 20219
to top
>emb|AL604023.12| Mouse DNA sequence from clone RP23-468D17 on chromosome 11, complete
              sequence
          Length = 225399

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 159    ctgcaacccaaggatctctcc 179
              |||||||||||||||||||||
Sbjct: 180173 ctgcaacccaaggatctctcc 180193
to top
>gb|AC118934.9| Mus musculus chromosome 19, clone RP24-172J14, complete sequence
          Length = 152728

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   ctgcttcagctgccctcaca 137
             ||||||||||||||||||||
Sbjct: 10944 ctgcttcagctgccctcaca 10925
to top
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 107     ttccgctctacctgcttcag 126
               ||||||||||||||||||||
Sbjct: 2555642 ttccgctctacctgcttcag 2555623
to top
>gb|AY659235.1| Synthetic construct Peudomonas aeruginosa clone FLH046730.01F
           PA2643 gene, partial cds
          Length = 996

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 79  ctcgtcgccttcgccatcgt 98
           ||||||||||||||||||||
Sbjct: 283 ctcgtcgccttcgccatcgt 302
to top
>gb|AE009095.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 121
            of 256 of the complete sequence
          Length = 10601

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 80   tcgtcgccttcgccatcgtcgtct 103
            |||||||||||| |||||||||||
Sbjct: 2339 tcgtcgccttcggcatcgtcgtct 2362
to top
>ref|XM_756060.1| Ustilago maydis 521 hypothetical protein (UM05006.1) partial mRNA
          Length = 5757

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  tcgccttcgccatcgtcgtc 102
           ||||||||||||||||||||
Sbjct: 854 tcgccttcgccatcgtcgtc 835
to top
>emb|CR450794.8| Zebrafish DNA sequence from clone CH211-259I2 in linkage group 14,
             complete sequence
          Length = 176875

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gcccttcttgctgcaaccca 168
             ||||||||||||||||||||
Sbjct: 92294 gcccttcttgctgcaaccca 92313
to top
>emb|BX005408.12| Zebrafish DNA sequence from clone DKEY-156H23 in linkage group 9,
              complete sequence
          Length = 210207

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    gcccttcttgctgcaaccca 168
              ||||||||||||||||||||
Sbjct: 132880 gcccttcttgctgcaaccca 132861
to top
>emb|CR847897.15| Zebrafish DNA sequence from clone DKEY-90L8 in linkage group 8,
             complete sequence
          Length = 164571

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   gcccttcttgctgcaaccca 168
             ||||||||||||||||||||
Sbjct: 79916 gcccttcttgctgcaaccca 79897
to top
>emb|AL590105.19| Human DNA sequence from clone RP11-273H7 on chromosome 10 Contains the
             5' end of the gene for protein kinase (PKE), gene
             KIAA1674, gene LOC170394, the 5' end of a novel gene and
             six CpG islands, complete sequence
          Length = 132772

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   ttcctgaaatggaggaagag 368
             ||||||||||||||||||||
Sbjct: 98846 ttcctgaaatggaggaagag 98827
to top
>emb|AL356862.10| Human DNA sequence from clone RP11-1M19 on chromosome 9q34.11-34.3
              Contains part of the RALGPS1A gene for Ral guanine
              nucleotide exchange factor RalGPS1A (RALGEF2, KIAA0351) and
              the ANGPTL2 gene for angiopoietin-like 2
              (angiopoietin-related protein 2)(ARP2, HARP), complete
              sequence
          Length = 145481

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 345    ccagttcctgaaatggagga 364
              ||||||||||||||||||||
Sbjct: 121662 ccagttcctgaaatggagga 121643
to top
>emb|AL078596.8|HSDJ429G5 Human DNA sequence from clone RP3-429G5 on chromosome 6q21-22.1
             Contains the 3' end of a novel gene, the NR2E1 gene for
             nuclear receptor subfamily 2 group E, the 3' end of the
             SNX3 gene for sorting nexin 3 and four CpG islands,
             complete sequence
          Length = 64183

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tttatccccttccttgcttt 31
             ||||||||||||||||||||
Sbjct: 23046 tttatccccttccttgcttt 23065
to top
>emb|CR392033.5| Zebrafish DNA sequence from clone DKEY-122A22 in linkage group 16,
              complete sequence
          Length = 170291

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    gcccttcttgctgcaaccca 168
              ||||||||||||||||||||
Sbjct: 136724 gcccttcttgctgcaaccca 136743
to top
>emb|CR394554.6| Zebrafish DNA sequence from clone CH211-113B13 in linkage group 25,
            complete sequence
          Length = 168993

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  gcccttcttgctgcaaccca 168
            ||||||||||||||||||||
Sbjct: 4654 gcccttcttgctgcaaccca 4635
to top
>emb|CR788247.9| Zebrafish DNA sequence from clone DKEY-47M24 in linkage group 13,
             complete sequence
          Length = 151044

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   gcccttcttgctgcaaccca 168
             ||||||||||||||||||||
Sbjct: 75780 gcccttcttgctgcaaccca 75761
to top
>emb|CR354598.7| Zebrafish DNA sequence from clone CH211-198K18 in linkage group 6,
              complete sequence
          Length = 190437

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    gcccttcttgctgcaaccca 168
              ||||||||||||||||||||
Sbjct: 176568 gcccttcttgctgcaaccca 176549
to top
>emb|BX927297.12| Zebrafish DNA sequence from clone DKEY-238M4 in linkage group 16,
              complete sequence
          Length = 132039

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    gcccttcttgctgcaaccca 168
              ||||||||||||||||||||
Sbjct: 131270 gcccttcttgctgcaaccca 131251
to top
>emb|BX000486.13| Zebrafish DNA sequence from clone DKEY-149M16 in linkage group 10,
             complete sequence
          Length = 195419

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gcccttcttgctgcaaccca 168
             ||||||||||||||||||||
Sbjct: 39731 gcccttcttgctgcaaccca 39750
to top
>emb|BX950871.13| Zebrafish DNA sequence from clone CH211-105C13 in linkage group 16,
            complete sequence
          Length = 165048

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  gcccttcttgctgcaaccca 168
            ||||||||||||||||||||
Sbjct: 1231 gcccttcttgctgcaaccca 1212
to top
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 80      tcgtcgccttcgccatcgtcgtct 103
               |||||||||||| |||||||||||
Sbjct: 1324235 tcgtcgccttcggcatcgtcgtct 1324258
to top
>gb|AC157522.2| Pan troglodytes BAC clone CH251-520I13 from chromosome unknown, complete
              sequence
          Length = 221631

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     tttatccccttccttgcttt 31
              ||||||||||||||||||||
Sbjct: 126306 tttatccccttccttgcttt 126287
to top
>gb|AC161470.3| Gallus gallus BAC clone CH261-85J8 from chromosome ul, complete
             sequence
          Length = 213142

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    atccccttccttgcttttct 34
             ||||||||||||||||||||
Sbjct: 73111 atccccttccttgcttttct 73130
to top
>emb|CR391943.6| Zebrafish DNA sequence from clone DKEY-15M21 in linkage group 9,
             complete sequence
          Length = 212667

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   gcccttcttgctgcaaccca 168
             ||||||||||||||||||||
Sbjct: 79810 gcccttcttgctgcaaccca 79791
to top
>emb|BX649371.6| Zebrafish DNA sequence from clone CH211-163G19 in linkage group 3,
            complete sequence
          Length = 151254

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  gcccttcttgctgcaaccca 168
            ||||||||||||||||||||
Sbjct: 2709 gcccttcttgctgcaaccca 2690
to top
>emb|BX649508.10| Zebrafish DNA sequence from clone DKEY-31M5 in linkage group 2,
             complete sequence
          Length = 266518

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gcccttcttgctgcaaccca 168
             ||||||||||||||||||||
Sbjct: 19922 gcccttcttgctgcaaccca 19941
to top
>emb|BX324110.10| Zebrafish DNA sequence from clone DKEY-250F19 in linkage group 3,
             complete sequence
          Length = 103014

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gcccttcttgctgcaaccca 168
             ||||||||||||||||||||
Sbjct: 73176 gcccttcttgctgcaaccca 73195
to top
>emb|BX548002.12| Zebrafish DNA sequence from clone CH211-170I2 in linkage group 25,
             complete sequence
          Length = 149569

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gcccttcttgctgcaaccca 168
             ||||||||||||||||||||
Sbjct: 29343 gcccttcttgctgcaaccca 29362
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     tcgccatcgtcgtctctctt 108
              ||||||||||||||||||||
Sbjct: 386107 tcgccatcgtcgtctctctt 386126
to top
>gb|AC093760.3| Homo sapiens BAC clone RP11-77N9 from 4, complete sequence
          Length = 41338

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    gaaaattctcctctcctctc 81
             ||||||||||||||||||||
Sbjct: 17604 gaaaattctcctctcctctc 17623
to top
>gb|AE004693.1| Pseudomonas aeruginosa PAO1, section 254 of 529 of the complete
            genome
          Length = 10188

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   ctcgtcgccttcgccatcgt 98
            ||||||||||||||||||||
Sbjct: 3093 ctcgtcgccttcgccatcgt 3112
to top
>emb|AL954683.11| Zebrafish DNA sequence from clone DKEY-49K10 in linkage group 1,
             complete sequence
          Length = 126845

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gcccttcttgctgcaaccca 168
             ||||||||||||||||||||
Sbjct: 16105 gcccttcttgctgcaaccca 16124
to top
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0450B04
          Length = 153268

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    tcgccatcgtcgtctctctt 108
             ||||||||||||||||||||
Sbjct: 95621 tcgccatcgtcgtctctctt 95640
to top
>emb|AL645689.11| Zebrafish DNA sequence from clone XX-BAC7CSE, complete sequence
          Length = 82848

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gcccttcttgctgcaaccca 168
             ||||||||||||||||||||
Sbjct: 63283 gcccttcttgctgcaaccca 63302
to top
>emb|CR354581.11| Zebrafish DNA sequence from clone CH211-231O17 in linkage group 7,
             complete sequence
          Length = 47648

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   gcccttcttgctgcaaccca 168
             ||||||||||||||||||||
Sbjct: 24655 gcccttcttgctgcaaccca 24636
to top
>emb|CR388140.8| Zebrafish DNA sequence from clone CH211-190G11, complete sequence
          Length = 160541

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 149  gcccttcttgctgcaaccca 168
            ||||||||||||||||||||
Sbjct: 2800 gcccttcttgctgcaaccca 2819
to top
>gb|AC116863.6| Mus musculus chromosome 19, clone RP24-408G9, complete sequence
          Length = 171621

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   ctgcttcagctgccctcaca 137
             ||||||||||||||||||||
Sbjct: 26547 ctgcttcagctgccctcaca 26566
to top
>emb|AL929582.10| Zebrafish DNA sequence from clone CH211-117M12, complete sequence
          Length = 175577

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gcccttcttgctgcaaccca 168
             ||||||||||||||||||||
Sbjct: 40923 gcccttcttgctgcaaccca 40942
to top
>emb|AL773598.5| Zebrafish DNA sequence from clone CH211-207G4, complete sequence
          Length = 209875

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    gcccttcttgctgcaaccca 168
              ||||||||||||||||||||
Sbjct: 118506 gcccttcttgctgcaaccca 118525
to top
>emb|BX000481.5| Zebrafish DNA sequence from clone CH211-13A4 in linkage group 5,
             complete sequence
          Length = 163926

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gcccttcttgctgcaaccca 168
             ||||||||||||||||||||
Sbjct: 14202 gcccttcttgctgcaaccca 14221
to top
>emb|AL954699.4| Zebrafish DNA sequence from clone CH211-264H3 in linkage group 5,
             complete sequence
          Length = 143013

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gcccttcttgctgcaaccca 168
             ||||||||||||||||||||
Sbjct: 15240 gcccttcttgctgcaaccca 15259
to top
>emb|CR385076.9| Zebrafish DNA sequence from clone DKEY-230H18 in linkage group 2,
            complete sequence
          Length = 172376

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 151  ccttcttgctgcaacccaag 170
            ||||||||||||||||||||
Sbjct: 3682 ccttcttgctgcaacccaag 3701
to top
>gb|U04732.1|PPU04732 Porphyra purpurea Avonport clone 26d12 sporophyte-specific mRNA,
           partial sequence
          Length = 599

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 80  tcgtcgccttcgccatcgtcgtct 103
           |||||||||||||| |||||||||
Sbjct: 88  tcgtcgccttcgccctcgtcgtct 65


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,201,968
Number of Sequences: 3902068
Number of extensions: 3201968
Number of successful extensions: 148181
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 148017
Number of HSP's gapped (non-prelim): 164
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top