ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CD48A_ARATH (P54609) Cell division control protein 48 homolog A ... 148 4e-36
2CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Val... 146 1e-35
3CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E ... 146 1e-35
4CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 h... 139 1e-33
5CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog 137 5e-33
6TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER... 110 1e-24
7TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER... 110 1e-24
8TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (T... 110 1e-24
9TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (T... 110 1e-24
10TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (T... 107 5e-24
11CDC48_YEAST (P25694) Cell division control protein 48 102 3e-22
12CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48 100 1e-21
13TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase h... 92 3e-19
14TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase h... 91 7e-19
15CDAT_PLAF7 (P46468) Putative cell division cycle ATPase 33 0.13
16A32CD_DROME (O46203) Accessory gland protein Acp32CD precursor 32 0.37
17BBM1_BRANA (Q8L3U3) Protein BABY BOOM 1 (BnBBM1) 29 2.4
18MBP1_YEAST (P39678) Transcription factor MBP1 (MBF subunit p120) 29 3.1
19POLG_TEV (P04517) Genome polyprotein [Contains: P1 proteinase (N... 29 3.1
20BBM2_BRANA (Q8LSN2) Protein BABY BOOM 2 (BnBBM2) 28 5.3
21ACDD_METJA (Q57577) Acetyl-CoA decarbonylase/synthase complex de... 28 6.9
22HSLU_COXBU (Q83A94) ATP-dependent hsl protease ATP-binding subun... 28 6.9
23Y700_VIBVU (Q8DE96) UPF0307 protein VV1_0700 27 9.1
24Y440_VIBVY (Q7MPC4) UPF0307 protein VV0440 27 9.1
25INX2_CAEEL (Q9U3K5) Innexin-2 27 9.1
26EGR3_RAT (P43301) Early growth response protein 3 (EGR-3) 27 9.1
27EGR3_MOUSE (P43300) Early growth response protein 3 (EGR-3) 27 9.1
28EGR3_HUMAN (Q06889) Early growth response protein 3 (EGR-3) (Zin... 27 9.1
29VP4_WTV (P13091) Nonstructural protein PNS4 27 9.1
30PBPB_HAEIN (P45345) Penicillin-binding protein 1B (PBP-1b) (PBP1... 27 9.1

>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)|
          Length = 809

 Score =  148 bits (373), Expect = 4e-36
 Identities = 68/86 (79%), Positives = 80/86 (93%)
 Frame = +3

Query: 126 PSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLL 305
           P+ S+D K+KKD+STAILERKKSPNRLVVDEA NDDNSVV+LHP TME+LQLFRGDT+L+
Sbjct: 4   PAESSDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILI 63

Query: 306 KGKKRKDTICIVLADDPCDEPKVRMN 383
           KGKKRKDT+CI LAD+ C+EPK+RMN
Sbjct: 64  KGKKRKDTVCIALADETCEEPKIRMN 89



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>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing|
           protein homolog) (VCP)
          Length = 807

 Score =  146 bits (368), Expect = 1e-35
 Identities = 72/91 (79%), Positives = 82/91 (90%), Gaps = 1/91 (1%)
 Frame = +3

Query: 114 QQGEPSSSADPKA-KKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRG 290
           QQGE   S+DPK+ KKD+STAILERKKSPNRLVVDEA NDDNSVV +HP TME+LQLFRG
Sbjct: 3   QQGE---SSDPKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRG 59

Query: 291 DTVLLKGKKRKDTICIVLADDPCDEPKVRMN 383
           DT+L+KGKKRKDTICI LAD+ C+EPK+RMN
Sbjct: 60  DTILIKGKKRKDTICIALADENCEEPKIRMN 90



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>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)|
           (Transitional endoplasmic reticulum ATPase E)
          Length = 810

 Score =  146 bits (368), Expect = 1e-35
 Identities = 70/87 (80%), Positives = 79/87 (90%)
 Frame = +3

Query: 123 EPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 302
           EP SS D K KKD+STAILERKKSPNRLVVDEA NDDNSVV+LHP TME+LQLFRGDT+L
Sbjct: 4   EPESS-DSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTIL 62

Query: 303 LKGKKRKDTICIVLADDPCDEPKVRMN 383
           +KGKKRKDT+CI LAD+ C+EPK+RMN
Sbjct: 63  IKGKKRKDTVCIALADETCEEPKIRMN 89



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>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D|
           (AtCDC48d) (Transitional endoplasmic reticulum ATPase D)
          Length = 815

 Score =  139 bits (351), Expect = 1e-33
 Identities = 66/86 (76%), Positives = 78/86 (90%), Gaps = 1/86 (1%)
 Frame = +3

Query: 129 SSSADPKA-KKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLL 305
           + S+D K  KKD+STAILE+KK+ NRLVVDEA NDDNSVV+LHPDTME+LQLFRGDT+L+
Sbjct: 5   AESSDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILI 64

Query: 306 KGKKRKDTICIVLADDPCDEPKVRMN 383
           KGKKRKDT+CI LAD+ CDEPK+RMN
Sbjct: 65  KGKKRKDTVCIALADETCDEPKIRMN 90



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>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog|
          Length = 805

 Score =  137 bits (346), Expect = 5e-33
 Identities = 66/87 (75%), Positives = 75/87 (86%)
 Frame = +3

Query: 123 EPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 302
           +  SS    AKKD+STAILERKK+ NRLVVDEA NDDNSVVALHP TME+LQLFRGDT+L
Sbjct: 4   QAESSDSKNAKKDFSTAILERKKAANRLVVDEAVNDDNSVVALHPATMEKLQLFRGDTIL 63

Query: 303 LKGKKRKDTICIVLADDPCDEPKVRMN 383
           +KGKKRKDT+ I LAD+ CDEPK+RMN
Sbjct: 64  IKGKKRKDTVVIALADETCDEPKIRMN 90



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>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  110 bits (274), Expect = 1e-24
 Identities = 54/85 (63%), Positives = 67/85 (78%)
 Frame = +3

Query: 129 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 308
           +S AD K   D STAIL++K  PNRL+VDEA N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 1   ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59

Query: 309 GKKRKDTICIVLADDPCDEPKVRMN 383
           GKKR++ +CIVL+DD C + K+RMN
Sbjct: 60  GKKRREAVCIVLSDDTCSDEKIRMN 84



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>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  110 bits (274), Expect = 1e-24
 Identities = 54/85 (63%), Positives = 67/85 (78%)
 Frame = +3

Query: 129 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 308
           +S AD K   D STAIL++K  PNRL+VDEA N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 1   ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59

Query: 309 GKKRKDTICIVLADDPCDEPKVRMN 383
           GKKR++ +CIVL+DD C + K+RMN
Sbjct: 60  GKKRREAVCIVLSDDTCSDEKIRMN 84



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>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  110 bits (274), Expect = 1e-24
 Identities = 54/85 (63%), Positives = 67/85 (78%)
 Frame = +3

Query: 129 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 308
           +S AD K   D STAIL++K  PNRL+VDEA N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 1   ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59

Query: 309 GKKRKDTICIVLADDPCDEPKVRMN 383
           GKKR++ +CIVL+DD C + K+RMN
Sbjct: 60  GKKRREAVCIVLSDDTCSDEKIRMN 84



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>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  110 bits (274), Expect = 1e-24
 Identities = 54/85 (63%), Positives = 67/85 (78%)
 Frame = +3

Query: 129 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 308
           +S AD K   D STAIL++K  PNRL+VDEA N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 1   ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59

Query: 309 GKKRKDTICIVLADDPCDEPKVRMN 383
           GKKR++ +CIVL+DD C + K+RMN
Sbjct: 60  GKKRREAVCIVLSDDTCSDEKIRMN 84



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>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit)
          Length = 805

 Score =  107 bits (268), Expect = 5e-24
 Identities = 52/85 (61%), Positives = 68/85 (80%)
 Frame = +3

Query: 129 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 308
           +S +D K+  D STAIL++K  PNRL+VDE+ N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 2   ASGSDTKSD-DLSTAILKQKSRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLK 60

Query: 309 GKKRKDTICIVLADDPCDEPKVRMN 383
           GKKR++ +CIVL+DD C + K+RMN
Sbjct: 61  GKKRREAVCIVLSDDTCSDEKIRMN 85



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>CDC48_YEAST (P25694) Cell division control protein 48|
          Length = 835

 Score =  102 bits (253), Expect = 3e-22
 Identities = 48/85 (56%), Positives = 66/85 (77%)
 Frame = +3

Query: 129 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 308
           +S  DP+ +   +TAIL RKK  N L+VD+A NDDNSV+A++ +TM++L+LFRGDTVL+K
Sbjct: 11  ASGVDPREEDKTATAILRRKKKDNMLLVDDAINDDNSVIAINSNTMDKLELFRGDTVLVK 70

Query: 309 GKKRKDTICIVLADDPCDEPKVRMN 383
           GKKRKDT+ IVL DD  ++   R+N
Sbjct: 71  GKKRKDTVLIVLIDDELEDGACRIN 95



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>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48|
          Length = 815

 Score =  100 bits (248), Expect = 1e-21
 Identities = 50/89 (56%), Positives = 67/89 (75%)
 Frame = +3

Query: 117 QGEPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDT 296
           QGE +   D  + +D +TAIL +K+ PN LVVD+ATNDDNSV+ L  +TME LQLFRGDT
Sbjct: 18  QGE-NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDT 76

Query: 297 VLLKGKKRKDTICIVLADDPCDEPKVRMN 383
           V++KGK+RKDT+ IVL D+  ++   R+N
Sbjct: 77  VVVKGKRRKDTVLIVLTDEEMEDGVARIN 105



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>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1|
           (p97/CDC48 homolog 1)
          Length = 809

 Score = 92.0 bits (227), Expect = 3e-19
 Identities = 44/87 (50%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
 Frame = +3

Query: 126 PSSSADPKAKKD-YSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 302
           P+  ++ + K D  STAIL+ K  PNRL+VD++  DDNSV+A+    M+ L LFRGD V+
Sbjct: 5   PTHQSEKEKKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVI 64

Query: 303 LKGKKRKDTICIVLADDPCDEPKVRMN 383
           LKGKKRK+++ I+++D+ C   KVRMN
Sbjct: 65  LKGKKRKESVAIIVSDESCPNEKVRMN 91



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>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2|
           (p97/CDC48 homolog 2)
          Length = 810

 Score = 90.9 bits (224), Expect = 7e-19
 Identities = 45/83 (54%), Positives = 61/83 (73%), Gaps = 2/83 (2%)
 Frame = +3

Query: 141 DPKAKK--DYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGK 314
           D K KK  + +TAIL+ KK PNRL++D++ NDDNS+V L    M+ L LFRGD+V+LKGK
Sbjct: 9   DEKEKKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGK 68

Query: 315 KRKDTICIVLADDPCDEPKVRMN 383
           KR++T+ IVL  D C   K++MN
Sbjct: 69  KRRETVSIVLNADNCPNDKIKMN 91



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>CDAT_PLAF7 (P46468) Putative cell division cycle ATPase|
          Length = 1229

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 177 LERKKSPNRLVVDEAT-NDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLAD 350
           L+  K P   +V+    N DN  + +  + M+ L +  G TVLLKGKK+++ + I   D
Sbjct: 333 LDSGKFPTYCLVENIDENLDNFDIYMSKEKMDELNINDGATVLLKGKKKREMLGIARLD 391



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>A32CD_DROME (O46203) Accessory gland protein Acp32CD precursor|
          Length = 329

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -3

Query: 373 TFGSSHGSSARTMQIVSFLFLPLRRTVSPRKSWSLSMVSGWRATTELSSLV--ASSTTRR 200
           TFGS+ GS+ RTM+ V      +RRT  PRK W    +   +AT ++   +     TTRR
Sbjct: 252 TFGSNAGSNQRTMEPVR----AVRRTRMPRK-WPAKRLLNGQATCQMDPKLEPRKMTTRR 306

Query: 199 LGLFFRS 179
                RS
Sbjct: 307 CNTTGRS 313



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>BBM1_BRANA (Q8L3U3) Protein BABY BOOM 1 (BnBBM1)|
          Length = 579

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 141 DPKAKKDYSTAILERKKSPNRLVVDEATNDDNS 239
           DP A  D S+AI     SP  +VVD  T D+NS
Sbjct: 40  DPTAASDESSAIQTSFPSPFGVVVDAFTRDNNS 72



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>MBP1_YEAST (P39678) Transcription factor MBP1 (MBF subunit p120)|
          Length = 833

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 147 KAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRK 323
           K K +Y   +L      N+L+ DE     N+ V    +T+ERL+L +  T+L   +K K
Sbjct: 714 KQKLEYRQTVLL-----NKLIEDETQATTNNTVEKDNNTLERLELAQELTMLQLQRKNK 767



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>POLG_TEV (P04517) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral geno
          Length = 3054

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 120  GEPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFR 287
            G+PS+  D       +      K   N+  +    N D+ ++A+HPD  ERL  F+
Sbjct: 2590 GQPSTVVDNTLMVIIAMLYTCEKCGINKEEIVYYVNGDDLLIAIHPDKAERLSRFK 2645



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>BBM2_BRANA (Q8LSN2) Protein BABY BOOM 2 (BnBBM2)|
          Length = 579

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 141 DPKAKKDYSTAILERKKSPNRLVVDEATNDDNS 239
           DP A  D S+AI     SP  +V+D  T D+NS
Sbjct: 40  DPTAASDESSAIQTSFPSPFGVVLDAFTRDNNS 72



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>ACDD_METJA (Q57577) Acetyl-CoA decarbonylase/synthase complex delta subunit|
           (ACDS complex delta subunit) (Corrinoid/iron-sulfur
           component small subunit)
          Length = 405

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 132 SSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQL--FRGDTVL 302
           S  DP   +D +  ++E    PNR+V+D  T      +    + M RL+L   +GD ++
Sbjct: 259 SIMDPNMARDLNRKLVEAGLDPNRIVMDPTTCALGYGIEFSINAMVRLRLNGLKGDELV 317



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>HSLU_COXBU (Q83A94) ATP-dependent hsl protease ATP-binding subunit hslU|
          Length = 447

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 117 QGEPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHP 257
           QGEP++   P  KK+ +T  L RKK  N  + D+    +   V+ HP
Sbjct: 143 QGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEVE---VSAHP 186



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>Y700_VIBVU (Q8DE96) UPF0307 protein VV1_0700|
          Length = 185

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 123 EPSSSADPKAKKDYS--TAILERKKSPNRLVVDEATNDDNSVVALHPD 260
           EP  +A  K +  +S  TA+L + ++    +V++  +  + VVAL+PD
Sbjct: 87  EPIQAALDKIRNKHSQNTAVLHKLETLRERIVEQGDSAIDDVVALYPD 134



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>Y440_VIBVY (Q7MPC4) UPF0307 protein VV0440|
          Length = 185

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 123 EPSSSADPKAKKDYS--TAILERKKSPNRLVVDEATNDDNSVVALHPD 260
           EP  +A  K +  +S  TA+L + ++    +V++  +  + VVAL+PD
Sbjct: 87  EPIQAALDKIRNKHSQNTAVLHKLETLRERIVEQGDSAIDDVVALYPD 134



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>INX2_CAEEL (Q9U3K5) Innexin-2|
          Length = 419

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 213 DEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLADDPCDEP 368
           +E  +D ++V +L+ D  ER   F  DT+ +    RK    I   D P   P
Sbjct: 360 NELDSDSSAVTSLNEDHPERYVAFNTDTIPMDRYARKHHSLIEEVDGPSAPP 411



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>EGR3_RAT (P43301) Early growth response protein 3 (EGR-3)|
          Length = 387

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 360 HMGHQQEQCRLCLSSF 313
           H GH+  QCR+C+ SF
Sbjct: 299 HTGHKPFQCRICMRSF 314



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>EGR3_MOUSE (P43300) Early growth response protein 3 (EGR-3)|
          Length = 387

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 360 HMGHQQEQCRLCLSSF 313
           H GH+  QCR+C+ SF
Sbjct: 299 HTGHKPFQCRICMRSF 314



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>EGR3_HUMAN (Q06889) Early growth response protein 3 (EGR-3) (Zinc finger|
           protein pilot)
          Length = 387

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 360 HMGHQQEQCRLCLSSF 313
           H GH+  QCR+C+ SF
Sbjct: 299 HTGHKPFQCRICMRSF 314



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>VP4_WTV (P13091) Nonstructural protein PNS4|
          Length = 732

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 376 LTFGSSHGSSARTMQIVSFLFLPLRRTVSPRKSWSLSMVSGW 251
           L F       A+   + SFL   L R V+P  S SL  V+ W
Sbjct: 189 LIFPGGCSGMAKLKSVYSFLESQLERIVTPTPSVSLKYVTSW 230



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>PBPB_HAEIN (P45345) Penicillin-binding protein 1B (PBP-1b) (PBP1b) (Murein|
           polymerase) [Includes: Penicillin-insensitive
           transglycosylase (EC 2.4.1.129) (Peptidoglycan
           glycosyltransferase) (Peptidoglycan TGase);
           Penicillin-sensitive transpeptidase (EC 3.
          Length = 781

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 355 GSSARTMQIVSFLFLPLRRTVSPRKSWSL-SMVSGWR 248
           G S  T Q+V  LFL   RT++ + + +L S+V  WR
Sbjct: 219 GGSTLTQQLVKNLFLSRERTITRKANEALMSLVLDWR 255


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,923,807
Number of Sequences: 219361
Number of extensions: 464581
Number of successful extensions: 2071
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2071
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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