Clone Name | bastl21h02 |
---|---|
Clone Library Name | barley_pub |
>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)| Length = 809 Score = 148 bits (373), Expect = 4e-36 Identities = 68/86 (79%), Positives = 80/86 (93%) Frame = +3 Query: 126 PSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLL 305 P+ S+D K+KKD+STAILERKKSPNRLVVDEA NDDNSVV+LHP TME+LQLFRGDT+L+ Sbjct: 4 PAESSDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILI 63 Query: 306 KGKKRKDTICIVLADDPCDEPKVRMN 383 KGKKRKDT+CI LAD+ C+EPK+RMN Sbjct: 64 KGKKRKDTVCIALADETCEEPKIRMN 89
>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing| protein homolog) (VCP) Length = 807 Score = 146 bits (368), Expect = 1e-35 Identities = 72/91 (79%), Positives = 82/91 (90%), Gaps = 1/91 (1%) Frame = +3 Query: 114 QQGEPSSSADPKA-KKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRG 290 QQGE S+DPK+ KKD+STAILERKKSPNRLVVDEA NDDNSVV +HP TME+LQLFRG Sbjct: 3 QQGE---SSDPKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRG 59 Query: 291 DTVLLKGKKRKDTICIVLADDPCDEPKVRMN 383 DT+L+KGKKRKDTICI LAD+ C+EPK+RMN Sbjct: 60 DTILIKGKKRKDTICIALADENCEEPKIRMN 90
>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)| (Transitional endoplasmic reticulum ATPase E) Length = 810 Score = 146 bits (368), Expect = 1e-35 Identities = 70/87 (80%), Positives = 79/87 (90%) Frame = +3 Query: 123 EPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 302 EP SS D K KKD+STAILERKKSPNRLVVDEA NDDNSVV+LHP TME+LQLFRGDT+L Sbjct: 4 EPESS-DSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTIL 62 Query: 303 LKGKKRKDTICIVLADDPCDEPKVRMN 383 +KGKKRKDT+CI LAD+ C+EPK+RMN Sbjct: 63 IKGKKRKDTVCIALADETCEEPKIRMN 89
>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D| (AtCDC48d) (Transitional endoplasmic reticulum ATPase D) Length = 815 Score = 139 bits (351), Expect = 1e-33 Identities = 66/86 (76%), Positives = 78/86 (90%), Gaps = 1/86 (1%) Frame = +3 Query: 129 SSSADPKA-KKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLL 305 + S+D K KKD+STAILE+KK+ NRLVVDEA NDDNSVV+LHPDTME+LQLFRGDT+L+ Sbjct: 5 AESSDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILI 64 Query: 306 KGKKRKDTICIVLADDPCDEPKVRMN 383 KGKKRKDT+CI LAD+ CDEPK+RMN Sbjct: 65 KGKKRKDTVCIALADETCDEPKIRMN 90
>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog| Length = 805 Score = 137 bits (346), Expect = 5e-33 Identities = 66/87 (75%), Positives = 75/87 (86%) Frame = +3 Query: 123 EPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 302 + SS AKKD+STAILERKK+ NRLVVDEA NDDNSVVALHP TME+LQLFRGDT+L Sbjct: 4 QAESSDSKNAKKDFSTAILERKKAANRLVVDEAVNDDNSVVALHPATMEKLQLFRGDTIL 63 Query: 303 LKGKKRKDTICIVLADDPCDEPKVRMN 383 +KGKKRKDT+ I LAD+ CDEPK+RMN Sbjct: 64 IKGKKRKDTVVIALADETCDEPKIRMN 90
>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 110 bits (274), Expect = 1e-24 Identities = 54/85 (63%), Positives = 67/85 (78%) Frame = +3 Query: 129 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 308 +S AD K D STAIL++K PNRL+VDEA N+DNSVV+L M+ LQLFRGDTVLLK Sbjct: 1 ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59 Query: 309 GKKRKDTICIVLADDPCDEPKVRMN 383 GKKR++ +CIVL+DD C + K+RMN Sbjct: 60 GKKRREAVCIVLSDDTCSDEKIRMN 84
>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 110 bits (274), Expect = 1e-24 Identities = 54/85 (63%), Positives = 67/85 (78%) Frame = +3 Query: 129 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 308 +S AD K D STAIL++K PNRL+VDEA N+DNSVV+L M+ LQLFRGDTVLLK Sbjct: 1 ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59 Query: 309 GKKRKDTICIVLADDPCDEPKVRMN 383 GKKR++ +CIVL+DD C + K+RMN Sbjct: 60 GKKRREAVCIVLSDDTCSDEKIRMN 84
>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 110 bits (274), Expect = 1e-24 Identities = 54/85 (63%), Positives = 67/85 (78%) Frame = +3 Query: 129 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 308 +S AD K D STAIL++K PNRL+VDEA N+DNSVV+L M+ LQLFRGDTVLLK Sbjct: 1 ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59 Query: 309 GKKRKDTICIVLADDPCDEPKVRMN 383 GKKR++ +CIVL+DD C + K+RMN Sbjct: 60 GKKRREAVCIVLSDDTCSDEKIRMN 84
>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 110 bits (274), Expect = 1e-24 Identities = 54/85 (63%), Positives = 67/85 (78%) Frame = +3 Query: 129 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 308 +S AD K D STAIL++K PNRL+VDEA N+DNSVV+L M+ LQLFRGDTVLLK Sbjct: 1 ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59 Query: 309 GKKRKDTICIVLADDPCDEPKVRMN 383 GKKR++ +CIVL+DD C + K+RMN Sbjct: 60 GKKRREAVCIVLSDDTCSDEKIRMN 84
>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) Length = 805 Score = 107 bits (268), Expect = 5e-24 Identities = 52/85 (61%), Positives = 68/85 (80%) Frame = +3 Query: 129 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 308 +S +D K+ D STAIL++K PNRL+VDE+ N+DNSVV+L M+ LQLFRGDTVLLK Sbjct: 2 ASGSDTKSD-DLSTAILKQKSRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLK 60 Query: 309 GKKRKDTICIVLADDPCDEPKVRMN 383 GKKR++ +CIVL+DD C + K+RMN Sbjct: 61 GKKRREAVCIVLSDDTCSDEKIRMN 85
>CDC48_YEAST (P25694) Cell division control protein 48| Length = 835 Score = 102 bits (253), Expect = 3e-22 Identities = 48/85 (56%), Positives = 66/85 (77%) Frame = +3 Query: 129 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 308 +S DP+ + +TAIL RKK N L+VD+A NDDNSV+A++ +TM++L+LFRGDTVL+K Sbjct: 11 ASGVDPREEDKTATAILRRKKKDNMLLVDDAINDDNSVIAINSNTMDKLELFRGDTVLVK 70 Query: 309 GKKRKDTICIVLADDPCDEPKVRMN 383 GKKRKDT+ IVL DD ++ R+N Sbjct: 71 GKKRKDTVLIVLIDDELEDGACRIN 95
>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48| Length = 815 Score = 100 bits (248), Expect = 1e-21 Identities = 50/89 (56%), Positives = 67/89 (75%) Frame = +3 Query: 117 QGEPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDT 296 QGE + D + +D +TAIL +K+ PN LVVD+ATNDDNSV+ L +TME LQLFRGDT Sbjct: 18 QGE-NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDT 76 Query: 297 VLLKGKKRKDTICIVLADDPCDEPKVRMN 383 V++KGK+RKDT+ IVL D+ ++ R+N Sbjct: 77 VVVKGKRRKDTVLIVLTDEEMEDGVARIN 105
>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1| (p97/CDC48 homolog 1) Length = 809 Score = 92.0 bits (227), Expect = 3e-19 Identities = 44/87 (50%), Positives = 63/87 (72%), Gaps = 1/87 (1%) Frame = +3 Query: 126 PSSSADPKAKKD-YSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 302 P+ ++ + K D STAIL+ K PNRL+VD++ DDNSV+A+ M+ L LFRGD V+ Sbjct: 5 PTHQSEKEKKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVI 64 Query: 303 LKGKKRKDTICIVLADDPCDEPKVRMN 383 LKGKKRK+++ I+++D+ C KVRMN Sbjct: 65 LKGKKRKESVAIIVSDESCPNEKVRMN 91
>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2| (p97/CDC48 homolog 2) Length = 810 Score = 90.9 bits (224), Expect = 7e-19 Identities = 45/83 (54%), Positives = 61/83 (73%), Gaps = 2/83 (2%) Frame = +3 Query: 141 DPKAKK--DYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGK 314 D K KK + +TAIL+ KK PNRL++D++ NDDNS+V L M+ L LFRGD+V+LKGK Sbjct: 9 DEKEKKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGK 68 Query: 315 KRKDTICIVLADDPCDEPKVRMN 383 KR++T+ IVL D C K++MN Sbjct: 69 KRRETVSIVLNADNCPNDKIKMN 91
>CDAT_PLAF7 (P46468) Putative cell division cycle ATPase| Length = 1229 Score = 33.5 bits (75), Expect = 0.13 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = +3 Query: 177 LERKKSPNRLVVDEAT-NDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLAD 350 L+ K P +V+ N DN + + + M+ L + G TVLLKGKK+++ + I D Sbjct: 333 LDSGKFPTYCLVENIDENLDNFDIYMSKEKMDELNINDGATVLLKGKKKREMLGIARLD 391
>A32CD_DROME (O46203) Accessory gland protein Acp32CD precursor| Length = 329 Score = 32.0 bits (71), Expect = 0.37 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Frame = -3 Query: 373 TFGSSHGSSARTMQIVSFLFLPLRRTVSPRKSWSLSMVSGWRATTELSSLV--ASSTTRR 200 TFGS+ GS+ RTM+ V +RRT PRK W + +AT ++ + TTRR Sbjct: 252 TFGSNAGSNQRTMEPVR----AVRRTRMPRK-WPAKRLLNGQATCQMDPKLEPRKMTTRR 306 Query: 199 LGLFFRS 179 RS Sbjct: 307 CNTTGRS 313
>BBM1_BRANA (Q8L3U3) Protein BABY BOOM 1 (BnBBM1)| Length = 579 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = +3 Query: 141 DPKAKKDYSTAILERKKSPNRLVVDEATNDDNS 239 DP A D S+AI SP +VVD T D+NS Sbjct: 40 DPTAASDESSAIQTSFPSPFGVVVDAFTRDNNS 72
>MBP1_YEAST (P39678) Transcription factor MBP1 (MBF subunit p120)| Length = 833 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/59 (32%), Positives = 30/59 (50%) Frame = +3 Query: 147 KAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRK 323 K K +Y +L N+L+ DE N+ V +T+ERL+L + T+L +K K Sbjct: 714 KQKLEYRQTVLL-----NKLIEDETQATTNNTVEKDNNTLERLELAQELTMLQLQRKNK 767
>POLG_TEV (P04517) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral geno Length = 3054 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = +3 Query: 120 GEPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFR 287 G+PS+ D + K N+ + N D+ ++A+HPD ERL F+ Sbjct: 2590 GQPSTVVDNTLMVIIAMLYTCEKCGINKEEIVYYVNGDDLLIAIHPDKAERLSRFK 2645
>BBM2_BRANA (Q8LSN2) Protein BABY BOOM 2 (BnBBM2)| Length = 579 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +3 Query: 141 DPKAKKDYSTAILERKKSPNRLVVDEATNDDNS 239 DP A D S+AI SP +V+D T D+NS Sbjct: 40 DPTAASDESSAIQTSFPSPFGVVLDAFTRDNNS 72
>ACDD_METJA (Q57577) Acetyl-CoA decarbonylase/synthase complex delta subunit| (ACDS complex delta subunit) (Corrinoid/iron-sulfur component small subunit) Length = 405 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = +3 Query: 132 SSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQL--FRGDTVL 302 S DP +D + ++E PNR+V+D T + + M RL+L +GD ++ Sbjct: 259 SIMDPNMARDLNRKLVEAGLDPNRIVMDPTTCALGYGIEFSINAMVRLRLNGLKGDELV 317
>HSLU_COXBU (Q83A94) ATP-dependent hsl protease ATP-binding subunit hslU| Length = 447 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +3 Query: 117 QGEPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHP 257 QGEP++ P KK+ +T L RKK N + D+ + V+ HP Sbjct: 143 QGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEVE---VSAHP 186
>Y700_VIBVU (Q8DE96) UPF0307 protein VV1_0700| Length = 185 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +3 Query: 123 EPSSSADPKAKKDYS--TAILERKKSPNRLVVDEATNDDNSVVALHPD 260 EP +A K + +S TA+L + ++ +V++ + + VVAL+PD Sbjct: 87 EPIQAALDKIRNKHSQNTAVLHKLETLRERIVEQGDSAIDDVVALYPD 134
>Y440_VIBVY (Q7MPC4) UPF0307 protein VV0440| Length = 185 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +3 Query: 123 EPSSSADPKAKKDYS--TAILERKKSPNRLVVDEATNDDNSVVALHPD 260 EP +A K + +S TA+L + ++ +V++ + + VVAL+PD Sbjct: 87 EPIQAALDKIRNKHSQNTAVLHKLETLRERIVEQGDSAIDDVVALYPD 134
>INX2_CAEEL (Q9U3K5) Innexin-2| Length = 419 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = +3 Query: 213 DEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLADDPCDEP 368 +E +D ++V +L+ D ER F DT+ + RK I D P P Sbjct: 360 NELDSDSSAVTSLNEDHPERYVAFNTDTIPMDRYARKHHSLIEEVDGPSAPP 411
>EGR3_RAT (P43301) Early growth response protein 3 (EGR-3)| Length = 387 Score = 27.3 bits (59), Expect = 9.1 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = -1 Query: 360 HMGHQQEQCRLCLSSF 313 H GH+ QCR+C+ SF Sbjct: 299 HTGHKPFQCRICMRSF 314
>EGR3_MOUSE (P43300) Early growth response protein 3 (EGR-3)| Length = 387 Score = 27.3 bits (59), Expect = 9.1 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = -1 Query: 360 HMGHQQEQCRLCLSSF 313 H GH+ QCR+C+ SF Sbjct: 299 HTGHKPFQCRICMRSF 314
>EGR3_HUMAN (Q06889) Early growth response protein 3 (EGR-3) (Zinc finger| protein pilot) Length = 387 Score = 27.3 bits (59), Expect = 9.1 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = -1 Query: 360 HMGHQQEQCRLCLSSF 313 H GH+ QCR+C+ SF Sbjct: 299 HTGHKPFQCRICMRSF 314
>VP4_WTV (P13091) Nonstructural protein PNS4| Length = 732 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -3 Query: 376 LTFGSSHGSSARTMQIVSFLFLPLRRTVSPRKSWSLSMVSGW 251 L F A+ + SFL L R V+P S SL V+ W Sbjct: 189 LIFPGGCSGMAKLKSVYSFLESQLERIVTPTPSVSLKYVTSW 230
>PBPB_HAEIN (P45345) Penicillin-binding protein 1B (PBP-1b) (PBP1b) (Murein| polymerase) [Includes: Penicillin-insensitive transglycosylase (EC 2.4.1.129) (Peptidoglycan glycosyltransferase) (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (EC 3. Length = 781 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = -3 Query: 355 GSSARTMQIVSFLFLPLRRTVSPRKSWSL-SMVSGWR 248 G S T Q+V LFL RT++ + + +L S+V WR Sbjct: 219 GGSTLTQQLVKNLFLSRERTITRKANEALMSLVLDWR 255 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,923,807 Number of Sequences: 219361 Number of extensions: 464581 Number of successful extensions: 2071 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2034 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2071 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)