ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocy... 57 1e-08
2NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 p... 33 0.16
3NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4... 33 0.16
4VGLC_BHV1C (P14378) Glycoprotein GIII precursor 32 0.36
5BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-assoc... 32 0.47
6BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-assoc... 32 0.47
7BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associa... 31 1.0
8BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-assoc... 31 1.0
9GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7 29 3.9
10TBC17_HUMAN (Q9HA65) TBC1 domain family member 17 29 3.9
11ERF_HUMAN (P50548) ETS domain-containing transcription factor ER... 28 5.2
12PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain... 28 5.2
13DNAK1_SYNPX (Q7U6R7) Chaperone protein dnaK1 (Heat shock protein... 28 5.2
14B3AT_RAT (P23562) Band 3 anion transport protein (Anion exchange... 28 6.7
15BEGIN_SHEEP (Q6R6L0) Brain-enriched guanylate kinase-associated ... 28 8.8
16SH22A_HUMAN (Q9NP31) SH2 domain protein 2A (T cell-specific adap... 28 8.8

>EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocyst complex|
           component Sec8)
          Length = 1053

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 24/32 (75%), Positives = 29/32 (90%)
 Frame = +2

Query: 86  GIFDGLPIPPDKSYLKEGLSRIDEGWAAARFD 181
           GIF+GLP+P DK+YL+E L+RIDE WAAARFD
Sbjct: 2   GIFNGLPVPSDKTYLREELARIDESWAAARFD 33



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>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 7    YSPVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVAD--RRGMGSG 171
            YS  S + AP P          P PA+   RPP      +P  RA AD  RR  G+G
Sbjct: 891  YSCCSAEAAPPPAKPPPPPQPLPSPAYPAARPPPGPAPFVPRERAAADRWRRAKGTG 947



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>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 7    YSPVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVAD--RRGMGSG 171
            YS  S + AP P          P PA+   RPP      +P  RA AD  RR  G+G
Sbjct: 891  YSCCSAEAAPPPAKPPPPPQPLPSPAYPAARPPPGPAPFVPRERAAADRWRRAKGTG 947



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>VGLC_BHV1C (P14378) Glycoprotein GIII precursor|
          Length = 521

 Score = 32.3 bits (72), Expect = 0.36
 Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
 Frame = +1

Query: 4   PYSPVSPDLAP---LPGSRLAVGNDEP-------PPAWHLRRPPNSARQILPEGRAVADR 153
           P +P SPD  P    PG+   VG  EP       PP  +   PP       P G   A R
Sbjct: 55  PPTPNSPDATPEDSTPGATTPVGTPEPPSVSEHDPPVTNSTPPPAPPEDGRPGGAGNASR 114

Query: 154 RGMGSGAVR 180
            G  SG  R
Sbjct: 115 DGRPSGGGR 123



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>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2157

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 13   PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 129
            P +P  AP P S L VG    PP+  +R PP  A ++LP
Sbjct: 1997 PPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLP 2035



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>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2160

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 13   PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 129
            P +P  AP P S L VG    PP+  +R PP  A ++LP
Sbjct: 2000 PPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLP 2038



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>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 13   PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 129
            P +P  AP P S L VG    PP   +R PP  A ++LP
Sbjct: 2001 PPAPPPAPPPLSLLPVGPALQPPNLAVRPPPAPAARVLP 2039



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>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2158

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 13   PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 129
            P +P  AP P S L VG    PP   +R PP  A ++LP
Sbjct: 1998 PPAPPPAPPPLSLLPVGPALQPPNLAVRPPPAPAARVLP 2036



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>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 104 GGRRRCHAGGGSSLPTARRDPGRGARSGETGLYG 3
           GG      GGG S    RR+ G G   GE G YG
Sbjct: 135 GGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYG 168



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>TBC17_HUMAN (Q9HA65) TBC1 domain family member 17|
          Length = 648

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +1

Query: 4   PYSPVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPE 132
           P+SP SP  +PLP S        PPP+      P+S+ +ILPE
Sbjct: 600 PHSP-SPTASPLPLSPTRAP-PTPPPSTDTAPQPDSSLEILPE 640



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>ERF_HUMAN (P50548) ETS domain-containing transcription factor ERF (Ets2|
           repressor factor)
          Length = 548

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 4   PYSPVSPDLAPLPGSRLAVGNDEPPP-AWHLRRPPNSARQILPEGRAV--ADRRGMGSGA 174
           P  P++P+  P+P S  +  +    P  + L+ PP   RQ     +AV  AD+ G  +G 
Sbjct: 349 PLPPMAPETPPVPSSASSSSSSSSSPFKFKLQPPPLGRRQRAAGEKAVAGADKSGGSAGG 408

Query: 175 V 177
           +
Sbjct: 409 L 409



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>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Activated in prostate cancer protein)
          Length = 2839

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = -3

Query: 158  PRRSATALPSGKICLAELGGRRRCHAGGG-----SSLPTARRDPGRGAR 27
            PRRS    P+G +   E GG R C  G G     +  P++  D G  A+
Sbjct: 2518 PRRSPGP-PAGGVSCPEKGGNRACPGGSGPKTSAAETPSSASDTGEAAQ 2565



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>DNAK1_SYNPX (Q7U6R7) Chaperone protein dnaK1 (Heat shock protein 70-1) (Heat|
           shock 70 kDa protein 1) (HSP70-1)
          Length = 662

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 157 LVDPRQPFLQV-RFVWRNWEAVEDATPVAVHRYRRRGGTRGEAR 29
           ++ PR  F  + RFV R+WE +ED++ +AV  Y  R   RG+ R
Sbjct: 59  VLSPRNTFSNLKRFVGRDWEELEDSS-LAV-PYTVRANDRGQVR 100



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>B3AT_RAT (P23562) Band 3 anion transport protein (Anion exchange protein 1)|
           (AE 1) (Solute carrier family 4 member 1) (CD233
           antigen)
          Length = 927

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 4   PYSPVSPDL-APLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRA 141
           P  P  P L   L  ++   G++EP P+  L+ PPNS   ++  GRA
Sbjct: 201 PLLPHQPSLETKLYCAQAEGGSEEPSPSGILKIPPNSETTLVLVGRA 247



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>BEGIN_SHEEP (Q6R6L0) Brain-enriched guanylate kinase-associated protein|
          Length = 653

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 13  PVSPDLAPL-PGSRLAVGNDEPPPAWHLRRPPNSARQILPEGR 138
           P  P   PL PG + A+    PP  W+LR  P SAR +   GR
Sbjct: 430 PGEPFRFPLSPGPQPAL---MPPNLWNLRAKPGSARLVAGAGR 469



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>SH22A_HUMAN (Q9NP31) SH2 domain protein 2A (T cell-specific adapter protein)|
           (TSAd) (VEGF receptor-associated protein) (SH2
           domain-containing adapter protein)
          Length = 389

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 70  EPPPAWHLRRPPNSARQILPE 132
           +PPPAW    P N +RQ+L +
Sbjct: 357 QPPPAWRHTLPHNLSRQVLQD 377


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,008,401
Number of Sequences: 219361
Number of extensions: 684573
Number of successful extensions: 2191
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2186
length of database: 80,573,946
effective HSP length: 35
effective length of database: 72,896,311
effective search space used: 1749511464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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