ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl21g08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478770.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3199 Score = 264 bits (133), Expect = 2e-67 Identities = 187/205 (91%) Strand = Plus / Plus Query: 173 tcaccaagccccgcaacgacaggcgcgggtaccgccgcgtggtgctcccgaatgccctgg 232 |||||| ||| |||||||||| |||||||||||||||||| |||||||| || | ||| | Sbjct: 233 tcaccaggccacgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcg 292 Query: 233 agtgcctcctcatcagcgaccccgacaccgacaaggcggcggcgtcgatgaatgtctcgg 292 ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 293 agtgcctcctcgtcagcgaccccgacaccgacaaggcggcggcgtcgatgaacgtctcgg 352 Query: 293 tggggtacttctgcgatcccgatgggatggaggggctcgcgcacttcctcgagcatatgc 352 |||| ||||||||||||||||| ||| | |||||||||||||||||||| |||||||||| Sbjct: 353 tgggctacttctgcgatcccgaggggctcgaggggctcgcgcacttccttgagcatatgc 412 Query: 353 ttttctacgcgagtgaaaaatatcc 377 ||||||| || ||||| |||||||| Sbjct: 413 ttttctatgctagtgagaaatatcc 437
>dbj|AK100076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001F09, full insert sequence Length = 3200 Score = 264 bits (133), Expect = 2e-67 Identities = 187/205 (91%) Strand = Plus / Plus Query: 173 tcaccaagccccgcaacgacaggcgcgggtaccgccgcgtggtgctcccgaatgccctgg 232 |||||| ||| |||||||||| |||||||||||||||||| |||||||| || | ||| | Sbjct: 233 tcaccaggccacgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcg 292 Query: 233 agtgcctcctcatcagcgaccccgacaccgacaaggcggcggcgtcgatgaatgtctcgg 292 ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 293 agtgcctcctcgtcagcgaccccgacaccgacaaggcggcggcgtcgatgaacgtctcgg 352 Query: 293 tggggtacttctgcgatcccgatgggatggaggggctcgcgcacttcctcgagcatatgc 352 |||| ||||||||||||||||| ||| | |||||||||||||||||||| |||||||||| Sbjct: 353 tgggctacttctgcgatcccgaggggctcgaggggctcgcgcacttccttgagcatatgc 412 Query: 353 ttttctacgcgagtgaaaaatatcc 377 ||||||| || ||||| |||||||| Sbjct: 413 ttttctatgctagtgagaaatatcc 437
>ref|XM_478769.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2997 Score = 218 bits (110), Expect = 1e-53 Identities = 134/142 (94%) Strand = Plus / Plus Query: 173 tcaccaagccccgcaacgacaggcgcgggtaccgccgcgtggtgctcccgaatgccctgg 232 |||||| |||||||||||||| |||||||||||||||||| |||||||| || ||||| | Sbjct: 119 tcaccaggccccgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcg 178 Query: 233 agtgcctcctcatcagcgaccccgacaccgacaaggcggcggcgtcgatgaatgtctcgg 292 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 agtgcctcctcgtcagcgaccccgacaccgacaaggcggcggcgtcgatgaatgtctcgg 238 Query: 293 tggggtacttctgcgatcccga 314 |||| ||||||||||||||||| Sbjct: 239 tgggctacttctgcgatcccga 260
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 135 bits (68), Expect = 1e-28 Identities = 89/96 (92%) Strand = Plus / Minus Query: 173 tcaccaagccccgcaacgacaggcgcgggtaccgccgcgtggtgctcccgaatgccctgg 232 |||||| |||||||||||||| |||||||||||||||||| |||||||| || ||||| | Sbjct: 22901097 tcaccaggccccgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcg 22901038 Query: 233 agtgcctcctcatcagcgaccccgacaccgacaagg 268 ||||||||||| |||||||||||||||||||||||| Sbjct: 22901037 agtgcctcctcgtcagcgaccccgacaccgacaagg 22901002 Score = 127 bits (64), Expect = 3e-26 Identities = 88/96 (91%) Strand = Plus / Minus Query: 173 tcaccaagccccgcaacgacaggcgcgggtaccgccgcgtggtgctcccgaatgccctgg 232 |||| |||||||||||||||| |||||||||||||||||| |||||||| || ||||| | Sbjct: 22937417 tcacgaagccccgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcg 22937358 Query: 233 agtgcctcctcatcagcgaccccgacaccgacaagg 268 |||||||| |||||||||||||||||||||| |||| Sbjct: 22937357 agtgcctcgtcatcagcgaccccgacaccgataagg 22937322 Score = 119 bits (60), Expect = 7e-24 Identities = 87/96 (90%) Strand = Plus / Minus Query: 173 tcaccaagccccgcaacgacaggcgcgggtaccgccgcgtggtgctcccgaatgccctgg 232 |||||| ||| |||||||||| |||||||||||||||||| |||||||| || | ||| | Sbjct: 22918861 tcaccaggccacgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcg 22918802 Query: 233 agtgcctcctcatcagcgaccccgacaccgacaagg 268 ||||||||||| |||||||||||||||||||||||| Sbjct: 22918801 agtgcctcctcgtcagcgaccccgacaccgacaagg 22918766 Score = 111 bits (56), Expect = 2e-21 Identities = 71/76 (93%) Strand = Plus / Minus Query: 266 aggcggcggcgtcgatgaatgtctcggtggggtacttctgcgatcccgatgggatggagg 325 ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| | |||| Sbjct: 22918649 aggcggcggcgtcgatgaacgtctcggtgggctacttctgcgatcccgaggggctcgagg 22918590 Query: 326 ggctcgcgcacttcct 341 |||||||||||||||| Sbjct: 22918589 ggctcgcgcacttcct 22918574 Score = 89.7 bits (45), Expect = 6e-15 Identities = 48/49 (97%) Strand = Plus / Minus Query: 266 aggcggcggcgtcgatgaatgtctcggtggggtacttctgcgatcccga 314 ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 22900894 aggcggcggcgtcgatgaatgtctcggtgggctacttctgcgatcccga 22900846 Score = 65.9 bits (33), Expect = 9e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 266 aggcggcggcgtcgatgaatgtctcggtggggtacttctgcgatcccga 314 ||||||||||||||||||| |||||||| || ||||||||||| ||||| Sbjct: 22937223 aggcggcggcgtcgatgaacgtctcggtaggctacttctgcgaccccga 22937175 Score = 46.1 bits (23), Expect = 0.081 Identities = 32/35 (91%) Strand = Plus / Minus Query: 343 gagcatatgcttttctacgcgagtgaaaaatatcc 377 ||||||||||||||||| || ||||| |||||||| Sbjct: 22916634 gagcatatgcttttctatgctagtgagaaatatcc 22916600
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 135 bits (68), Expect = 1e-28 Identities = 89/96 (92%) Strand = Plus / Minus Query: 173 tcaccaagccccgcaacgacaggcgcgggtaccgccgcgtggtgctcccgaatgccctgg 232 |||||| |||||||||||||| |||||||||||||||||| |||||||| || ||||| | Sbjct: 94364 tcaccaggccccgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcg 94305 Query: 233 agtgcctcctcatcagcgaccccgacaccgacaagg 268 ||||||||||| |||||||||||||||||||||||| Sbjct: 94304 agtgcctcctcgtcagcgaccccgacaccgacaagg 94269 Score = 119 bits (60), Expect = 7e-24 Identities = 87/96 (90%) Strand = Plus / Minus Query: 173 tcaccaagccccgcaacgacaggcgcgggtaccgccgcgtggtgctcccgaatgccctgg 232 |||||| ||| |||||||||| |||||||||||||||||| |||||||| || | ||| | Sbjct: 112128 tcaccaggccacgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcg 112069 Query: 233 agtgcctcctcatcagcgaccccgacaccgacaagg 268 ||||||||||| |||||||||||||||||||||||| Sbjct: 112068 agtgcctcctcgtcagcgaccccgacaccgacaagg 112033 Score = 111 bits (56), Expect = 2e-21 Identities = 71/76 (93%) Strand = Plus / Minus Query: 266 aggcggcggcgtcgatgaatgtctcggtggggtacttctgcgatcccgatgggatggagg 325 ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| | |||| Sbjct: 111916 aggcggcggcgtcgatgaacgtctcggtgggctacttctgcgatcccgaggggctcgagg 111857 Query: 326 ggctcgcgcacttcct 341 |||||||||||||||| Sbjct: 111856 ggctcgcgcacttcct 111841 Score = 89.7 bits (45), Expect = 6e-15 Identities = 48/49 (97%) Strand = Plus / Minus Query: 266 aggcggcggcgtcgatgaatgtctcggtggggtacttctgcgatcccga 314 ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 94161 aggcggcggcgtcgatgaatgtctcggtgggctacttctgcgatcccga 94113 Score = 46.1 bits (23), Expect = 0.081 Identities = 32/35 (91%) Strand = Plus / Minus Query: 343 gagcatatgcttttctacgcgagtgaaaaatatcc 377 ||||||||||||||||| || ||||| |||||||| Sbjct: 109901 gagcatatgcttttctatgctagtgagaaatatcc 109867
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 127 bits (64), Expect = 3e-26 Identities = 88/96 (91%) Strand = Plus / Minus Query: 173 tcaccaagccccgcaacgacaggcgcgggtaccgccgcgtggtgctcccgaatgccctgg 232 |||| |||||||||||||||| |||||||||||||||||| |||||||| || ||||| | Sbjct: 12631 tcacgaagccccgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcg 12572 Query: 233 agtgcctcctcatcagcgaccccgacaccgacaagg 268 |||||||| |||||||||||||||||||||| |||| Sbjct: 12571 agtgcctcgtcatcagcgaccccgacaccgataagg 12536 Score = 65.9 bits (33), Expect = 9e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 266 aggcggcggcgtcgatgaatgtctcggtggggtacttctgcgatcccga 314 ||||||||||||||||||| |||||||| || ||||||||||| ||||| Sbjct: 12437 aggcggcggcgtcgatgaacgtctcggtaggctacttctgcgaccccga 12389
>gb|AY022725.1| Oryza sativa microsatellite MRG5050 containing (CCG)X10, closest to marker R2561, genomic sequence Length = 230 Score = 103 bits (52), Expect = 4e-19 Identities = 79/88 (89%) Strand = Plus / Minus Query: 173 tcaccaagccccgcaacgacaggcgcgggtaccgccgcgtggtgctcccgaatgccctgg 232 |||||| ||| |||||||||| |||||||||||||||||| |||||||| || | ||| | Sbjct: 88 tcaccaggccacgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcg 29 Query: 233 agtgcctcctcatcagcgaccccgacac 260 ||||||||||| |||||||||||||||| Sbjct: 28 agtgcctcctcgtcagcgaccccgacac 1
>dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085G23, full insert sequence Length = 3262 Score = 99.6 bits (50), Expect = 6e-18 Identities = 143/174 (82%) Strand = Plus / Plus Query: 201 gtaccgccgcgtggtgctcccgaatgccctggagtgcctcctcatcagcgaccccgacac 260 ||||||||| ||||||||||| || || || ||||||||||||||||||||| |||| || Sbjct: 198 gtaccgccgggtggtgctccccaacgcgctcgagtgcctcctcatcagcgactccgaaac 257 Query: 261 cgacaaggcggcggcgtcgatgaatgtctcggtggggtacttctgcgatcccgatgggat 320 ||||||||||||||||| ||| | || ||||| | ||| |||| || || ||| | Sbjct: 258 cgacaaggcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggct 317 Query: 321 ggaggggctcgcgcacttcctcgagcatatgcttttctacgcgagtgaaaaata 374 ||||| ||||| |||||||||||||||||||| || || || ||||| ||||| Sbjct: 318 cgagggcctcgcccacttcctcgagcatatgctattttatgccagtgagaaata 371
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 184 cgcaacgacaggcgcgggtaccgccgcgtggtgctcccgaatgccctggagtgcctcctc 243 |||| ||||| ||| | ||||||||| ||||||||||| ||||| || |||||||||||| Sbjct: 32978351 cgcagcgacaagcgggagtaccgccgggtggtgctccccaatgcgctcgagtgcctcctc 32978410 Query: 244 atcagcgaccccgacaccgacaagg 268 ||||||||| ||||||||||||||| Sbjct: 32978411 atcagcgactccgacaccgacaagg 32978435 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 201 gtaccgccgcgtggtgctcccgaatgccctggagtgcctcctcatcagcgaccccgacac 260 ||||||||| ||||||||||| || || || ||||||||||||||||||||| |||| || Sbjct: 32958823 gtaccgccgggtggtgctccccaacgcgctcgagtgcctcctcatcagcgactccgaaac 32958882 Query: 261 cgacaagg 268 |||||||| Sbjct: 32958883 cgacaagg 32958890 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 61 cgacgacgactgggcggcgacg 82 |||||||||||||||||||||| Sbjct: 22542773 cgacgacgactgggcggcgacg 22542752 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 13748118 ctccccgagcgacgacgacgactgg 13748142 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 12499473 ctccccgagcgacgacgacgactgg 12499497
>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0010B10 Length = 155263 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 184 cgcaacgacaggcgcgggtaccgccgcgtggtgctcccgaatgccctggagtgcctcctc 243 |||| ||||| ||| | ||||||||| ||||||||||| ||||| || |||||||||||| Sbjct: 44579 cgcagcgacaagcgggagtaccgccgggtggtgctccccaatgcgctcgagtgcctcctc 44638 Query: 244 atcagcgaccccgacaccgacaagg 268 ||||||||| ||||||||||||||| Sbjct: 44639 atcagcgactccgacaccgacaagg 44663 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 201 gtaccgccgcgtggtgctcccgaatgccctggagtgcctcctcatcagcgaccccgacac 260 ||||||||| ||||||||||| || || || ||||||||||||||||||||| |||| || Sbjct: 25051 gtaccgccgggtggtgctccccaacgcgctcgagtgcctcctcatcagcgactccgaaac 25110 Query: 261 cgacaagg 268 |||||||| Sbjct: 25111 cgacaagg 25118
>ref|XM_463460.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2838 Score = 95.6 bits (48), Expect = 1e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 184 cgcaacgacaggcgcgggtaccgccgcgtggtgctcccgaatgccctggagtgcctcctc 243 |||| ||||| ||| | ||||||||| ||||||||||| ||||| || |||||||||||| Sbjct: 46 cgcagcgacaagcgggagtaccgccgggtggtgctccccaatgcgctcgagtgcctcctc 105 Query: 244 atcagcgaccccgacaccgacaag 267 ||||||||| |||||||||||||| Sbjct: 106 atcagcgactccgacaccgacaag 129
>ref|XM_463457.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2841 Score = 79.8 bits (40), Expect = 6e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 201 gtaccgccgcgtggtgctcccgaatgccctggagtgcctcctcatcagcgaccccgacac 260 ||||||||| ||||||||||| || || || ||||||||||||||||||||| |||| || Sbjct: 75 gtaccgccgggtggtgctccccaacgcgctcgagtgcctcctcatcagcgactccgaaac 134 Query: 261 cgacaagg 268 |||||||| Sbjct: 135 cgacaagg 142 Score = 50.1 bits (25), Expect = 0.005 Identities = 46/53 (86%) Strand = Plus / Plus Query: 322 gaggggctcgcgcacttcctcgagcatatgcttttctacgcgagtgaaaaata 374 ||||| ||||| |||||||||||||||||||| || || || ||||| ||||| Sbjct: 256 gagggcctcgcccacttcctcgagcatatgctattttatgccagtgagaaata 308
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 58 cgacgacgacgactgggcggcgacg 82 ||||||||||||||||||||||||| Sbjct: 22688752 cgacgacgacgactgggcggcgacg 22688776 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 15954093 ctccccgagcgacgacgacgactgg 15954069
>dbj|AP005966.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1047H05 Length = 187273 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 58 cgacgacgacgactgggcggcgacg 82 ||||||||||||||||||||||||| Sbjct: 154161 cgacgacgacgactgggcggcgacg 154185
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 325 gggctcgcgcacttcctcgagca 347 ||||||||||||||||||||||| Sbjct: 8220555 gggctcgcgcacttcctcgagca 8220577
>ref|XM_463353.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 600 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 61 cgacgacgactgggcggcgacg 82 |||||||||||||||||||||| Sbjct: 430 cgacgacgactgggcggcgacg 409
>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1097D05 Length = 144879 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 61 cgacgacgactgggcggcgacg 82 |||||||||||||||||||||| Sbjct: 58510 cgacgacgactgggcggcgacg 58489
>gb|AC153379.1| Mus musculus 10 BAC RP23-230J20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 174195 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 3 gacttgacctcccccaaccccc 24 |||||||||||||||||||||| Sbjct: 98262 gacttgacctcccccaaccccc 98283
>ref|XM_465184.1| Oryza sativa (japonica cultivar-group), mRNA Length = 324 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 237 ctccccaagcgacgacgacgactgg 261
>ref|NM_183989.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2013 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 444 ctccccgagcgacgacgacgactgg 468
>gb|AC150654.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06, complete sequence Length = 189328 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 95802 ctccccgagcgacgacgacgactgg 95778 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 30177 ctccccgagcgacgacgacgactgg 30153
>gb|AC147925.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032N11 map near 50283S, complete sequence Length = 139217 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 62818 ctccccgagcgacgacgacgactgg 62842
>gb|AC092173.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0095J15, complete sequence Length = 156023 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 19275 ctccccgagcgacgacgacgactgg 19251
>gb|AC137612.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0022B03, complete sequence Length = 151814 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 137049 ctccccgagcgacgacgacgactgg 137025
>gb|AC109646.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017K22, complete sequence Length = 176399 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 164697 ctccccgagcgacgacgacgactgg 164673 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 99073 ctccccgagcgacgacgacgactgg 99049
>gb|AC137615.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0053F13, from chromosome 5, complete sequence Length = 149538 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 51627 ctccccgagcgacgacgacgactgg 51603
>emb|AL731581.2|OSJN00228 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022F16, complete sequence Length = 154397 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 92837 ctccccgagcgacgacgacgactgg 92813
>gb|AC083944.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0047G15, from chromosome 10, complete sequence Length = 166474 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 152805 ctccccgagcgacgacgacgactgg 152781
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 3983522 ctccccgagcgacgacgacgactgg 3983498
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 11445080 ctccccgagcgacgacgacgactgg 11445056 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 6403106 ctccccgagcgacgacgacgactgg 6403082 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 tcccctagcgacgacgacgactgg 73 ||||| |||||||||||||||||| Sbjct: 1628056 tccccgagcgacgacgacgactgg 1628079
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 16110007 ctccccgagcgacgacgacgactgg 16109983 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 16044383 ctccccgagcgacgacgacgactgg 16044359 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 14447984 ctccccgagcgacgacgacgactgg 14448008
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 5147504 ctccccgagcgacgacgacgactgg 5147480
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 11108041 ctccccgagcgacgacgacgactgg 11108017 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 4771413 ctccccgagcgacgacgacgactgg 4771437
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 10151533 ctccccgagcgacgacgacgactgg 10151509
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 12148182 ctccccaagcgacgacgacgactgg 12148158
>dbj|AP003205.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1146B04 Length = 145186 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 86446 ctccccgagcgacgacgacgactgg 86470
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0537A05 Length = 152396 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 11083 ctccccgagcgacgacgacgactgg 11107
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1135C02 Length = 152306 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 85088 ctccccgagcgacgacgacgactgg 85112
>dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0031P18 Length = 156535 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 87542 ctccccgagcgacgacgacgactgg 87518
>dbj|AP004734.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0026P23 Length = 180188 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 167096 ctccccgagcgacgacgacgactgg 167072
>dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0455A11 Length = 158629 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 129429 ctccccgagcgacgacgacgactgg 129453
>dbj|AP005476.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0026D20 Length = 130634 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 96487 ctccccaagcgacgacgacgactgg 96463
>dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1446H11 Length = 135488 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 78647 ctccccgagcgacgacgacgactgg 78623
>tpe|BN000542.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx13 gene for class III peroxidase 13 precursor, exons 1-3 Length = 9315 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 6972 ctccccgagcgacgacgacgactgg 6996
>dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0560B10, complete sequence Length = 108295 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 66557 ctccccgagcgacgacgacgactgg 66533
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 5148291 ctccccgagcgacgacgacgactgg 5148267
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 16200029 ctccccgagcgacgacgacgactgg 16200005 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 16137565 ctccccgagcgacgacgacgactgg 16137541 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 14529985 ctccccgagcgacgacgacgactgg 14530009
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 11444751 ctccccgagcgacgacgacgactgg 11444727 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 6402981 ctccccgagcgacgacgacgactgg 6402957 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 tcccctagcgacgacgacgactgg 73 ||||| |||||||||||||||||| Sbjct: 1628036 tccccgagcgacgacgacgactgg 1628059
>emb|AL732650.5|CNS08C9P Oryza sativa chromosome 12, . BAC OSJNBa0054O08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 167806 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 91884 ctccccgagcgacgacgacgactgg 91908
>emb|AL732649.3|CNS08C9O Oryza sativa chromosome 12, . BAC OSJNBb0067N05 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109555 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 ctcccctagcgacgacgacgactgg 73 |||||| |||||||||||||||||| Sbjct: 64654 ctccccgagcgacgacgacgactgg 64630
>gb|AC163661.4| Mus musculus BAC clone RP23-288B18 from chromosome 10, complete sequence Length = 210846 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ttgacctcccccaacccccg 25 |||||||||||||||||||| Sbjct: 127081 ttgacctcccccaacccccg 127062
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 183 ccgcaacgacaggcgcgggtaccgccgc 210 |||||||||||||||| || |||||||| Sbjct: 242834 ccgcaacgacaggcgcaggcaccgccgc 242807
>gb|AC103376.7| Mus musculus chromosome 8, clone RP24-226P5, complete sequence Length = 165714 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 tgacctcccccaacccccgt 26 |||||||||||||||||||| Sbjct: 101072 tgacctcccccaacccccgt 101053
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gcgagccggccggcggcgcc 138 |||||||||||||||||||| Sbjct: 1009202 gcgagccggccggcggcgcc 1009221
>ref|XM_842923.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0318) partial mRNA Length = 1440 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 183 ccgcaacgacaggcgcgggtaccgccgc 210 |||||||||||||||| || |||||||| Sbjct: 658 ccgcaacgacaggcgcaggcaccgccgc 631
>ref|XM_756964.1| Ustilago maydis 521 hypothetical protein (UM05910.1) partial mRNA Length = 1185 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tccccagcgagccggccggc 132 |||||||||||||||||||| Sbjct: 620 tccccagcgagccggccggc 639
>gb|AC121926.3| Mus musculus BAC clone RP24-202B3 from chromosome 10, complete sequence Length = 185398 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ttgacctcccccaacccccg 25 |||||||||||||||||||| Sbjct: 52832 ttgacctcccccaacccccg 52813
>emb|Z83840.7|HS216E10 Human DNA sequence from clone CTA-216E10 on chromosome 22, complete sequence Length = 122320 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cttgacctcccccaaccccc 24 |||||||||||||||||||| Sbjct: 77805 cttgacctcccccaaccccc 77786
>gb|AC163098.4| Mus musculus chromosome 19, clone RP23-262J17, complete sequence Length = 170948 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cttgacctcccccaaccccc 24 |||||||||||||||||||| Sbjct: 97826 cttgacctcccccaaccccc 97845
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 cgacgactgggcggcgacgc 83 |||||||||||||||||||| Sbjct: 1372438 cgacgactgggcggcgacgc 1372419
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13 Length = 349564 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gcgagccggccggcggcgcc 138 |||||||||||||||||||| Sbjct: 324917 gcgagccggccggcggcgcc 324936
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gcgagccggccggcggcgcc 138 |||||||||||||||||||| Sbjct: 22655 gcgagccggccggcggcgcc 22674
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ggttgaggtcgaagtcacca 178 |||||||||||||||||||| Sbjct: 147322 ggttgaggtcgaagtcacca 147303
>gb|AF078737.1|AF078737 Caldicellulosiruptor sp. Tok7B.1 XynA (xynA) and CelB (celB) genes, complete cds; and unknown genes Length = 11707 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 cagcgaccccgacaccgaca 265 |||||||||||||||||||| Sbjct: 8053 cagcgaccccgacaccgaca 8072
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 acaggcgcgggtaccgccgcgtgg 214 |||||||||| ||||||||||||| Sbjct: 6342704 acaggcgcggataccgccgcgtgg 6342681
>gb|AC120557.12| Mus musculus chromosome 19, clone RP24-493E6, complete sequence Length = 169131 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cttgacctcccccaaccccc 24 |||||||||||||||||||| Sbjct: 40492 cttgacctcccccaaccccc 40511
>emb|BX000508.1|CNS08CDY Oryza sativa chromosome 12, . BAC OJ1575_G05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 91883 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 tcccctagcgacgacgacgactgg 73 ||||| |||||||||||||||||| Sbjct: 64868 tccccgagcgacgacgacgactgg 64845
>emb|AL845479.8| Mouse DNA sequence from clone RP23-232N20 on chromosome 2, complete sequence Length = 102283 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 ctcccccaacccccgtgcgaagcc 34 ||||||||||||||||| |||||| Sbjct: 84069 ctcccccaacccccgtgagaagcc 84092 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,221,419 Number of Sequences: 3902068 Number of extensions: 2221419 Number of successful extensions: 53917 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52430 Number of HSP's gapped (non-prelim): 1487 length of query: 377 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 355 effective length of database: 17,147,199,772 effective search space: 6087255919060 effective search space used: 6087255919060 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
