ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl21g07 |
|---|---|
| Clone Library Name | barley_pub |
>SF3B3_HUMAN (Q15393) Splicing factor 3B subunit 3 (Spliceosome-associated| protein 130) (SAP 130) (SF3b130) (Pre-mRNA splicing factor SF3b 130 kDa subunit) (STAF130) Length = 1217 Score = 128 bits (321), Expect = 4e-30 Identities = 66/107 (61%), Positives = 80/107 (74%) Frame = +1 Query: 64 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 243 M+LY+LTLQRATG A+ G+FSG + QEI V+RG L+LLRPDP TG++ Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSG----------TKQQEIVVSRGKILELLRPDPNTGKV 50 Query: 244 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRN 384 TLL+V+VFG IRSL FRLTG TKDY+VVGSDSGR+VILEY P +N Sbjct: 51 HTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKN 97
>RSE1_USTMA (Q4PGM6) Pre-mRNA-splicing factor RSE1| Length = 1221 Score = 115 bits (287), Expect = 3e-26 Identities = 60/107 (56%), Positives = 74/107 (69%) Frame = +1 Query: 64 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 243 MYLY+LTLQ + V+G FSG + QEI VA+G L+LLRPD +TG++ Sbjct: 4 MYLYNLTLQASGSVNATVVGQFSG----------TRQQEIIVAKGSRLELLRPDTQTGKV 53 Query: 244 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRN 384 T+LS D FG IRSLA FRLTG +KDY++VGSDSGR+VILEY P N Sbjct: 54 DTVLSHDAFGVIRSLAAFRLTGGSKDYVIVGSDSGRIVILEYQPKTN 100
>RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1| Length = 1225 Score = 100 bits (250), Expect = 6e-22 Identities = 49/107 (45%), Positives = 69/107 (64%) Frame = +1 Query: 64 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 243 M++YSLT+Q T A++G F AG+ Q+I A G L + RPDP G++ Sbjct: 7 MFMYSLTIQPPTAITQAILGQF----------AGTKEQQIVTASGSKLTIHRPDPTQGKI 56 Query: 244 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRN 384 + S DVFG IR+LA FRL G++KDY+++GSDSGR+ I+EY P +N Sbjct: 57 TPIYSQDVFGIIRTLAAFRLAGSSKDYIIIGSDSGRITIIEYVPSQN 103
>RSE1_NEUCR (Q7RYR4) Pre-mRNA-splicing factor rse-1| Length = 1271 Score = 100 bits (248), Expect = 1e-21 Identities = 49/107 (45%), Positives = 69/107 (64%) Frame = +1 Query: 64 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 243 M+LYSLT+Q T A++G FSG + Q+I A G L LL+PDP G++ Sbjct: 7 MFLYSLTIQPPTAVTQALLGQFSG----------TKEQQILTASGSRLTLLQPDPRQGKV 56 Query: 244 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRN 384 TLLS D+FG +R++A FRL G+ KDY+++ +DSGR+ I+EY P N Sbjct: 57 NTLLSHDIFGIVRAIASFRLAGSHKDYIILATDSGRITIIEYLPKTN 103
>RSE1_EMENI (Q5B1X8) Pre-mRNA-splicing factor rse1| Length = 1226 Score = 99.0 bits (245), Expect = 2e-21 Identities = 49/107 (45%), Positives = 68/107 (63%) Frame = +1 Query: 64 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 243 M++YSLT+Q T A++G F AG+ Q+I A G L + RPDP G++ Sbjct: 7 MFMYSLTIQPPTAITQAILGQF----------AGTKEQQIVTASGSKLTIHRPDPTQGKV 56 Query: 244 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRN 384 L + DVFG IR+LA FRL G+ KDY+++GSDSGR+ I+EY P +N Sbjct: 57 IPLYTQDVFGIIRTLAAFRLAGSNKDYIIIGSDSGRITIIEYVPSQN 103
>RSE1_MAGGR (Q52E49) Pre-mRNA-splicing factor RSE1| Length = 1229 Score = 97.1 bits (240), Expect = 9e-21 Identities = 50/107 (46%), Positives = 68/107 (63%) Frame = +1 Query: 64 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 243 M+LYSL++Q + A++G FSG + Q+I A G L L RPDP G++ Sbjct: 7 MFLYSLSIQPPSTITRAILGQFSG----------TKEQQIVAASGSRLTLYRPDPTQGKV 56 Query: 244 RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRN 384 L+S DVFG IR LA FRL G++KDYL++ SDSGR+ I+EY P +N Sbjct: 57 VPLMSHDVFGIIRDLASFRLAGSSKDYLIIASDSGRITIVEYLPAQN 103
>RSE1_CRYNE (Q5KP25) Pre-mRNA-splicing factor RSE1| Length = 1217 Score = 87.0 bits (214), Expect = 1e-17 Identities = 49/103 (47%), Positives = 66/103 (64%), Gaps = 1/103 (0%) Frame = +1 Query: 64 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGT-LDLLRPDPETGR 240 M+L +LTL T AV+GSFSG S +QEI RGGT L++ + + TG+ Sbjct: 1 MHLLNLTLSSPTNVSTAVVGSFSG----------SKSQEILCVRGGTKLEIFKLNATTGQ 50 Query: 241 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEY 369 L T++S + FG IR++A FRL G TKDY++ SDSGRL ILE+ Sbjct: 51 LDTIVSTEAFGTIRNIAGFRLAGMTKDYILATSDSGRLSILEF 93
>RSE1_SCHPO (Q9UTT2) Pre-mRNA-splicing factor rse1 (Pre-mRNA processing protein| 12) (Spliceosome associated protein 130) Length = 1206 Score = 76.6 bits (187), Expect = 1e-14 Identities = 42/108 (38%), Positives = 64/108 (59%) Frame = +1 Query: 61 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 240 +++LYSLT+Q + + S SG+ + QEI +A L + + D GR Sbjct: 6 SLFLYSLTIQNSNYVQSSCAASLSGKKA----------QEIVIATESRLLIYKVDATDGR 55 Query: 241 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRN 384 + +L+ + FG IR++A RLTG +DYLVV SDSGR+ ILEY+ ++N Sbjct: 56 MNCILNQNCFGIIRNVAPLRLTGFKRDYLVVTSDSGRITILEYNVEKN 103
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 74.3 bits (181), Expect = 7e-14 Identities = 38/107 (35%), Positives = 66/107 (61%) Frame = +1 Query: 61 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 240 ++YLY+LT++ + + +++G F G +KKS QEI +A +++L + D TG+ Sbjct: 7 SLYLYNLTIKHPSLCIASIVGQFLG--NKKS-------QEIILANSTSIELWKADSNTGK 57 Query: 241 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDR 381 L + FG I+ + + RL G KDY+V+ SDSG+LV+LE+ ++ Sbjct: 58 LEKIYQQASFGIIQGIDKIRLVGTQKDYVVITSDSGKLVVLEFDIEK 104
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 54.3 bits (129), Expect = 7e-08 Identities = 33/103 (32%), Positives = 57/103 (55%) Frame = +1 Query: 61 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 240 ++YLY+LTL+ + + +++G F +D+ NA Q++ + TL L + E G+ Sbjct: 39 SVYLYNLTLKPPSYYISSIVGQFYKQDNSTKNA-----QQLVLVSSTTLQLFEINEEAGK 93 Query: 241 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEY 369 L S ++ G I S+ + L+ D +V+ SDSG L IL+Y Sbjct: 94 LELQSSQNLLGIINSIEKICLSEV--DGVVITSDSGNLSILQY 134
>RSE1_YARLI (Q6CAH5) Pre-mRNA-splicing factor RSE1| Length = 1143 Score = 46.2 bits (108), Expect = 2e-05 Identities = 31/104 (29%), Positives = 50/104 (48%) Frame = +1 Query: 70 LYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRLRT 249 LY TL R++ A+ G FSG+ + + + G L L D +TG + Sbjct: 24 LYHSTL-RSSSPKSAICGRFSGKSQQVITLSST---------GNALYLYSHDGDTGTVTL 73 Query: 250 LLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDR 381 + + +R + FRL G KDY++ SDSG + +LE+ +R Sbjct: 74 IHTHLTHCQVREIRAFRLPGLKKDYVIASSDSGVISVLEFRHNR 117
>RSE1_ASHGO (Q753D4) Pre-mRNA-splicing factor RSE1| Length = 1288 Score = 40.4 bits (93), Expect = 0.001 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 12/114 (10%) Frame = +1 Query: 64 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQ------------EIAVARGGTL 207 ++LY ++LQ+ V + IG F A G S + +I +A + Sbjct: 7 LHLYHVSLQKQRNYVHSCIGHFVDYRHHHIRAQGGSVEGGKKGSKWRKQLQICMATQTQV 66 Query: 208 DLLRPDPETGRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEY 369 +L D E GRLR L + VFG I L+ G + L+V DSG++ +L + Sbjct: 67 ELY--DVEEGRLRRLFTRTVFGTITGLSSVVADG--RSVLIVVGDSGKMSVLRF 116
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 37.7 bits (86), Expect = 0.007 Identities = 26/103 (25%), Positives = 51/103 (49%) Frame = +1 Query: 61 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 240 +++ Y++T Q+ T + +G+F+ A S+ EI LL P Sbjct: 2 SVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEI--------HLLSPQ----G 49 Query: 241 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEY 369 L+T+L V ++G I ++ FR G +D+L V ++ + +L++ Sbjct: 50 LQTILDVPLYGRIATMELFRPHGEAQDFLFVATERYKFCVLQW 92
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 35.8 bits (81), Expect = 0.026 Identities = 24/102 (23%), Positives = 46/102 (45%) Frame = +1 Query: 73 YSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRLRTL 252 Y +T + T + +G+F+ A + EI LL P L+ + Sbjct: 6 YVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEI--------HLLTPQG----LQPM 53 Query: 253 LSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPD 378 L V ++G I +L FR G +D+L + ++ + +L++ P+ Sbjct: 54 LDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDPE 95
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) (High pigmentation protein 1) Length = 1090 Score = 35.4 bits (80), Expect = 0.034 Identities = 25/106 (23%), Positives = 49/106 (46%) Frame = +1 Query: 61 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 240 +++ Y +T + T + +G+F+G A + EI LL P Sbjct: 2 SVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEI--------HLLTPQG---- 49 Query: 241 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPD 378 L+ +L V ++G I +L FR G T+D L + ++ + +L++ + Sbjct: 50 LQPMLDVPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTE 95
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) Length = 1095 Score = 34.7 bits (78), Expect = 0.057 Identities = 23/106 (21%), Positives = 48/106 (45%) Frame = +1 Query: 61 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 240 +++ Y +T + T + +G+F+G A + EI + L + P Sbjct: 2 SVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQP---- 57 Query: 241 LRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPD 378 +L V ++G I +L FR G T+D L + ++ + +L++ + Sbjct: 58 ---MLDVPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTE 100
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 34.7 bits (78), Expect = 0.057 Identities = 30/101 (29%), Positives = 43/101 (42%) Frame = +1 Query: 67 YLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRLR 246 Y Y +T Q+ T V G F+ + A ++ EI V T + LRP E G Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVV---TAEGLRPVKEVG--- 56 Query: 247 TLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEY 369 ++G I + FR G +KD L + + ILEY Sbjct: 57 ------MYGKIAVMELFRPKGESKDLLFILTAKYNACILEY 91
>RSE1_CANGA (Q6FLQ6) Pre-mRNA-splicing factor RSE1| Length = 1296 Score = 32.7 bits (73), Expect = 0.22 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = +1 Query: 64 MYLYSLTLQRATGAVCAVIGSFSGRDSKK 150 M LY LTLQR + V +V GSF GRDS + Sbjct: 1 MELYHLTLQRQSNYVHSVKGSFLGRDSNE 29
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 32.3 bits (72), Expect = 0.28 Identities = 29/101 (28%), Positives = 42/101 (41%) Frame = +1 Query: 67 YLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRLR 246 Y Y +T Q+ T V F+ + A ++ EI V T + LRP E G Sbjct: 3 YNYVVTAQKPTAVNGCVTAHFTSAEDLNLLIAKNTRLEIYVV---TAEGLRPVKEVG--- 56 Query: 247 TLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEY 369 ++G I + FR G +KD L + + ILEY Sbjct: 57 ------MYGKIAVMELFRPKGESKDLLFILTAKYNACILEY 91
>ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)| Length = 1669 Score = 32.0 bits (71), Expect = 0.37 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = +1 Query: 106 VCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDP--ETGRLRTLLSVDVFGAI 279 V A I FS + ++SN ++ +I + G +DL PD + LR LL+ F + Sbjct: 177 VLASIPGFSVKPRRRSNKKLTTAAQIEQTKDGKIDLETPDSILASTNLRALLNKQTFSLL 236 Query: 280 RSLAQFRL 303 L Q+ L Sbjct: 237 PPLYQYNL 244
>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to| Golgi transport factor 1) (Spliceosome-associated protein 130) Length = 1361 Score = 30.4 bits (67), Expect = 1.1 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 9/110 (8%) Frame = +1 Query: 64 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL 243 +YLY LTL++ T V + IG F + AGS ++ + L D G L Sbjct: 58 LYLYHLTLKKQTNFVHSCIGHFVDLE------AGSKREQSQLCVATETHLELYDTADGEL 111 Query: 244 RTLLSV-DVFGAIRSLAQFRLTGATK--------DYLVVGSDSGRLVILE 366 + + ++F I S+ L + +L + SDSG L I++ Sbjct: 112 KLIAKFQNLFATITSMKSLDLPHSGSRAKASNWPTFLALTSDSGNLSIVQ 161
>RPTOR_HUMAN (Q8N122) Regulatory associated protein of mTOR (Raptor) (P150| target of rapamycin (TOR)-scaffold protein) Length = 1335 Score = 29.6 bits (65), Expect = 1.8 Identities = 21/58 (36%), Positives = 29/58 (50%) Frame = +1 Query: 184 AVARGGTLDLLRPDPETGRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLV 357 A GG+L +R P T RLR SV +G IR++A R + L + +SG V Sbjct: 698 ATTEGGSLTPVRDSPCTPRLR---SVSSYGNIRAVATARSLNKSLQNLSLTEESGGAV 752
>NFIP2_MOUSE (Q91ZP6) NEDD4 family-interacting protein 2 (NEDD4 WW| domain-binding protein 5A) (Fragment) Length = 311 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%) Frame = +1 Query: 94 ATGAVCAVIGSFSGRD-----SKKSNAAGSSTQEIAVA-RGGTLDLLRPDPETGRL 243 ATG+ A G GR + AA +ST+E A R G +PDPE GR+ Sbjct: 16 ATGSEAAPPGDLGGRTRGGGRGSAAAAATTSTREAEGAERRGDTPARKPDPEAGRM 71
>BT1_MAIZE (P29518) Protein brittle-1, chloroplast precursor| Length = 436 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = +1 Query: 217 RPDPETGRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLV 357 RP + G + TLL GAI S A F L A K + VG+ GR V Sbjct: 319 RPGADVGPVATLLIGSAAGAIASSATFPLEVARKQ-MQVGAVGGRQV 364
>PPCK_BRAJA (Q89BK7) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 538 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%) Frame = +1 Query: 52 GVGAMYLYSLTLQRAT----GAVCAVIGSFSGRDSKKSNAAGSSTQE 180 G +Y YSL+ A GA+CA G F+GR K +T + Sbjct: 29 GAPQLYQYSLSAGEAVLSADGALCADTGEFTGRSPKDKFTVRDATTD 75
>GCDA_ACIFE (Q06700) Glutaconyl-CoA decarboxylase alpha subunit (EC 4.1.1.70)| (Carboxyltransferase) Length = 587 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +1 Query: 73 YSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGT 204 + +TL++ T A V+G G D+ + + G++ EIAV G T Sbjct: 448 FEITLRKGTAAAHYVLGGPQGNDT-NAFSIGTAATEIAVMNGET 490
>RPTOR_MOUSE (Q8K4Q0) Regulatory associated protein of mTOR (Raptor) (P150| target of rapamycin (TOR)-scaffold protein) Length = 1335 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/58 (34%), Positives = 28/58 (48%) Frame = +1 Query: 184 AVARGGTLDLLRPDPETGRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLV 357 A GG+L +R P T RLR SV +G IR++ R + L + +SG V Sbjct: 698 AATEGGSLTPVRDSPCTPRLR---SVSSYGNIRAVTTARNLNKSLQNLSLTEESGSSV 752
>ARP6_ASPFU (Q4W9M3) Actin-like protein arp6| Length = 468 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +1 Query: 103 AVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGR 240 AVC V +F+G D +++ A G T+D + PDP TG+ Sbjct: 260 AVCFVSNNFAG-DLEQTWQGNRKRGLTDAAEGITVDYVLPDPNTGK 304
>COG8_CAEEL (O44502) Putative conserved oligomeric Golgi complex component 8| Length = 743 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +1 Query: 289 AQFRLTGATKDYLVVGSDSGRLVILEYSPD 378 A RLTG+++D +++G D L E +PD Sbjct: 351 ATSRLTGSSRDIVMIGIDPASLPQFETAPD 380
>DHA1_STAAW (Q8NWQ3) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +1 Query: 136 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 222 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAS (Q6G9C3) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +1 Query: 136 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 222 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAR (Q6GGW9) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +1 Query: 136 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 222 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAN (P99151) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +1 Query: 136 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 222 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAM (P63478) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +1 Query: 136 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 222 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281
>DHA1_STAAC (Q5HFY4) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +1 Query: 136 RDSKKSNAAGSSTQEIAVARGGTLDLLRP 222 R+ KS GS +IA+ +GGT++ +RP Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP 281 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.134 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,354,360 Number of Sequences: 219361 Number of extensions: 292672 Number of successful extensions: 1214 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 1190 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1202 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
