ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC116591.4| Mus musculus BAC clone RP24-90K1 from chromosome ... 38 2.3
2ref|XM_989516.1| PREDICTED: Mus musculus protein phosphatase 1, ... 38 2.3
3ref|XM_909597.2| PREDICTED: Mus musculus protein phosphatase 1, ... 38 2.3
4ref|XM_993154.1| PREDICTED: Mus musculus protein phosphatase 1, ... 38 2.3
5gb|AC146333.35| Medicago truncatula clone mth2-8d3, complete seq... 38 2.3
6dbj|AK131886.1| Mus musculus adult male stomach cDNA, RIKEN full... 38 2.3
7gb|AC104940.2| Homo sapiens chromosome 8, clone RP11-378J9, comp... 38 2.3
8gb|AC013652.8| Homo sapiens chromosome 15, clone RP11-462P6, com... 38 2.3
9gb|AC015522.6|AC015522 Homo sapiens chromosome 8, clone RP11-327... 38 2.3
10dbj|AK044095.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 38 2.3
11gb|AC022841.4|AC022841 Homo sapiens chromosome 15, clone RP11-21... 38 2.3
12gb|CP000097.1| Synechococcus sp. CC9902, complete genome 36 9.3
13ref|NM_005157.3| Homo sapiens v-abl Abelson murine leukemia vira... 36 9.3
14ref|NM_007313.2| Homo sapiens v-abl Abelson murine leukemia vira... 36 9.3
15emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c2... 36 9.3
16ref|XM_848161.1| PREDICTED: Canis familiaris hypothetical protei... 36 9.3
17ref|XM_646670.1| Entamoeba histolytica HM-1:IMSS conserved hypot... 36 9.3
18ref|XM_649201.1| Entamoeba histolytica HM-1:IMSS conserved hypot... 36 9.3
19emb|AL603839.9| Human DNA sequence from clone RP11-656D10 on chr... 36 9.3
20emb|AL136971.7| Human DNA sequence from clone RP3-322A2 on chrom... 36 9.3
21emb|AL021918.1|HS34I8 Human DNA sequence from clone XXbac-34I8 o... 36 9.3
22emb|X97629.1|AMDPNS1VP Aleutian mink disease parvovirus NS1 and ... 36 9.3
23gb|DQ145721.1| Homo sapiens v-abl Abelson murine leukemia viral ... 36 9.3
24gb|AC164970.2| Mus musculus BAC clone RP24-222P1 from chromosome... 36 9.3
25emb|Z18276.1|AMSEQA Aleutian mink disease parvovirus sequence 36 9.3
26emb|X51945.1|HSABLM H.sapiens c-abl mRNA 3'-fragment 36 9.3
27gb|AC012614.8| Homo sapiens chromosome 5 clone CTB-30K1, complet... 36 9.3
28gb|U07563.1|HSABLGR3 Human proto-oncogene tyrosine-protein kinas... 36 9.3
29gb|AC025464.5| Homo sapiens chromosome 5 clone CTD-2260C5, compl... 36 9.3
30gb|AC010608.7| Homo sapiens chromosome 5 clone CTB-3M24, complet... 36 9.3
31gb|AC010206.8|AC010206 Homo sapiens 12 BAC RP11-13G14 (Roswell P... 36 9.3
32gb|AF218918.1|AF218918 Aphelocoma coerulescens flsj3 mitochondri... 36 9.3
33emb|X77085.1|AMDVNSPR3 Aleutian mink disease parvovirus ADV-Unit... 36 9.3
34emb|X77083.1|AMDVNSPR1 Aleutian mink disease parvovirus (ADV-Uta... 36 9.3
35emb|AL161733.20| Human DNA sequence from clone RP11-83J21 on chr... 36 9.3
36dbj|AB209642.1| Homo sapiens mRNA for Proto-oncogene tyrosine-pr... 36 9.3
37dbj|AB209456.1| Homo sapiens mRNA for v-abl Abelson murine leuke... 36 9.3
38gb|M20036.1|MDPCGA Aleutian mink disease parvovirus complete genome 36 9.3
39gb|M32981.1|MDPUPS Aleutian mink disease parvovirus (ADV-Utah 1 ... 36 9.3
40gb|M63044.1|MDPMVT6 Aleutian mink disease parvovirus genomic DNA... 36 9.3
41gb|M63048.1|MDPMVT10 Aleutian mink disease parvovirus genomic DN... 36 9.3
42emb|X16416.1|HSABL Human c-abl mRNA encoding p150 protein 36 9.3 
>gb|AC116591.4| Mus musculus BAC clone RP24-90K1 from chromosome 14, complete sequence
          Length = 237561

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    ctgttttccacccaaatct 38
             |||||||||||||||||||
Sbjct: 26911 ctgttttccacccaaatct 26893
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>ref|XM_989516.1| PREDICTED: Mus musculus protein phosphatase 1, regulatory (inhibitor)
            subunit 3E (Ppp1r3e), mRNA
          Length = 3996

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   ctgttttccacccaaatct 38
            |||||||||||||||||||
Sbjct: 3401 ctgttttccacccaaatct 3383
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>ref|XM_909597.2| PREDICTED: Mus musculus protein phosphatase 1, regulatory (inhibitor)
            subunit 3E (Ppp1r3e), mRNA
          Length = 3985

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   ctgttttccacccaaatct 38
            |||||||||||||||||||
Sbjct: 3390 ctgttttccacccaaatct 3372
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>ref|XM_993154.1| PREDICTED: Mus musculus protein phosphatase 1, regulatory (inhibitor)
            subunit 3E (Ppp1r3e), mRNA
          Length = 3996

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   ctgttttccacccaaatct 38
            |||||||||||||||||||
Sbjct: 3401 ctgttttccacccaaatct 3383
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>gb|AC146333.35| Medicago truncatula clone mth2-8d3, complete sequence
          Length = 122694

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 13     tcatcctctgttttccacc 31
              |||||||||||||||||||
Sbjct: 103264 tcatcctctgttttccacc 103282
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>dbj|AK131886.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched
           library, clone:2210402I05 product:unclassifiable, full
           insert sequence
          Length = 1149

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 20  ctgttttccacccaaatct 38
           |||||||||||||||||||
Sbjct: 461 ctgttttccacccaaatct 443
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>gb|AC104940.2| Homo sapiens chromosome 8, clone RP11-378J9, complete sequence
          Length = 215962

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    atcctctgttttccaccca 33
             |||||||||||||||||||
Sbjct: 89389 atcctctgttttccaccca 89371
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>gb|AC013652.8| Homo sapiens chromosome 15, clone RP11-462P6, complete sequence
          Length = 189761

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 16     tcctctgttttccacccaa 34
              |||||||||||||||||||
Sbjct: 122507 tcctctgttttccacccaa 122489
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>gb|AC015522.6|AC015522 Homo sapiens chromosome 8, clone RP11-327O12, complete sequence
          Length = 147026

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     atcctctgttttccaccca 33
              |||||||||||||||||||
Sbjct: 138583 atcctctgttttccaccca 138601
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>dbj|AK044095.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
           enriched library, clone:A830089H19 product:hypothetical
           protein, full insert sequence
          Length = 1025

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 20  ctgttttccacccaaatct 38
           |||||||||||||||||||
Sbjct: 430 ctgttttccacccaaatct 412
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>gb|AC022841.4|AC022841 Homo sapiens chromosome 15, clone RP11-213C21, complete sequence
          Length = 157657

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    tcctctgttttccacccaa 34
             |||||||||||||||||||
Sbjct: 21847 tcctctgttttccacccaa 21829
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>gb|CP000097.1| Synechococcus sp. CC9902, complete genome
          Length = 2234828

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 24    tttccacccaaatctgcg 41
             ||||||||||||||||||
Sbjct: 37124 tttccacccaaatctgcg 37107
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>ref|NM_005157.3| Homo sapiens v-abl Abelson murine leukemia viral oncogene homolog 1
            (ABL1), transcript variant a, mRNA
          Length = 5384

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 20   ctgttttccacccaaatc 37
            ||||||||||||||||||
Sbjct: 4035 ctgttttccacccaaatc 4018
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>ref|NM_007313.2| Homo sapiens v-abl Abelson murine leukemia viral oncogene homolog 1
            (ABL1), transcript variant b, mRNA
          Length = 5881

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 20   ctgttttccacccaaatc 37
            ||||||||||||||||||
Sbjct: 4528 ctgttttccacccaaatc 4511
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>emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE
          Length = 243542

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 13    tcatcctctgttttccac 30
             ||||||||||||||||||
Sbjct: 54209 tcatcctctgttttccac 54226
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>ref|XM_848161.1| PREDICTED: Canis familiaris hypothetical protein LOC610628
            (LOC610628), mRNA
          Length = 1122

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 5    caacttaatcatcctctgtttt 26
            |||||| |||||||||||||||
Sbjct: 1068 caacttcatcatcctctgtttt 1089
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>ref|XM_646670.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
            (149.t00015) partial mRNA
          Length = 1050

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 6    aacttaatcatcctctgttttc 27
            |||||||||||| |||||||||
Sbjct: 1019 aacttaatcatcatctgttttc 998
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>ref|XM_649201.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
            (57.t00028) partial mRNA
          Length = 1410

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 6    aacttaatcatcctctgttttc 27
            |||||||||||| |||||||||
Sbjct: 1379 aacttaatcatcatctgttttc 1358
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>emb|AL603839.9| Human DNA sequence from clone RP11-656D10 on chromosome 1 Contains the
             gene for a novel zinc finger protein, the gene for a novel
             protein and three novel genes, complete sequence
          Length = 64478

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 21    tgttttccacccaaatct 38
             ||||||||||||||||||
Sbjct: 40006 tgttttccacccaaatct 39989
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>emb|AL136971.7| Human DNA sequence from clone RP3-322A2 on chromosome 6 Contains part
             of the ANKRD6 gene for ankyrin repeat domain 6 (KIAA0957),
             complete sequence
          Length = 82601

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     ttccaacttaatcatcct 19
             ||||||||||||||||||
Sbjct: 28820 ttccaacttaatcatcct 28837
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>emb|AL021918.1|HS34I8 Human DNA sequence from clone XXbac-34I8 on chromosome 6p21.3-22.1
             Contains the 5' end of the ZNF184 gene for Kruppel-like
             zinc finger protein 184, a heterogeneous nuclear
             ribonucleoprotein A1 (HNRPA1) pseudogene, a CD83 antigen
             pseudogene, ESTs, STSs, GSSs and three CpG islands,
             complete sequence
          Length = 159506

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 19    tctgttttccacccaaat 36
             ||||||||||||||||||
Sbjct: 24823 tctgttttccacccaaat 24806
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>emb|X97629.1|AMDPNS1VP Aleutian mink disease parvovirus NS1 and VP1 genes
          Length = 4718

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 8    cttaatcatcctctgttt 25
            ||||||||||||||||||
Sbjct: 1837 cttaatcatcctctgttt 1820
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>gb|DQ145721.1| Homo sapiens v-abl Abelson murine leukemia viral oncogene homolog 1
              (ABL1) gene, complete cds
          Length = 176708

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 20     ctgttttccacccaaatc 37
              ||||||||||||||||||
Sbjct: 174453 ctgttttccacccaaatc 174436
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>gb|AC164970.2| Mus musculus BAC clone RP24-222P1 from chromosome 16, complete sequence
          Length = 202577

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 23     ttttccacccaaatctgc 40
              ||||||||||||||||||
Sbjct: 110176 ttttccacccaaatctgc 110193
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>emb|Z18276.1|AMSEQA Aleutian mink disease parvovirus sequence
          Length = 4569

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 8    cttaatcatcctctgttt 25
            ||||||||||||||||||
Sbjct: 1798 cttaatcatcctctgttt 1781
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>emb|X51945.1|HSABLM H.sapiens c-abl mRNA 3'-fragment
          Length = 2374

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 20   ctgttttccacccaaatc 37
            ||||||||||||||||||
Sbjct: 1027 ctgttttccacccaaatc 1010
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>gb|AC012614.8| Homo sapiens chromosome 5 clone CTB-30K1, complete sequence
          Length = 128501

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 19     tctgttttccacccaaat 36
              ||||||||||||||||||
Sbjct: 110947 tctgttttccacccaaat 110930
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>gb|U07563.1|HSABLGR3 Human proto-oncogene tyrosine-protein kinase (ABL) gene, exon 1a and
             exons 2-10, complete cds
          Length = 84539

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 20    ctgttttccacccaaatc 37
             ||||||||||||||||||
Sbjct: 81084 ctgttttccacccaaatc 81067
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>gb|AC025464.5| Homo sapiens chromosome 5 clone CTD-2260C5, complete sequence
          Length = 115265

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 19     tctgttttccacccaaat 36
              ||||||||||||||||||
Sbjct: 112031 tctgttttccacccaaat 112048
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>gb|AC010608.7| Homo sapiens chromosome 5 clone CTB-3M24, complete sequence
          Length = 210408

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 19    tctgttttccacccaaat 36
             ||||||||||||||||||
Sbjct: 66775 tctgttttccacccaaat 66758
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>gb|AC010206.8|AC010206 Homo sapiens 12 BAC RP11-13G14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 171523

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 23    ttttccacccaaatctgc 40
             ||||||||||||||||||
Sbjct: 81028 ttttccacccaaatctgc 81045
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>gb|AF218918.1|AF218918 Aphelocoma coerulescens flsj3 mitochondrial control region, partial
            sequence
          Length = 1300

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 16   tcctctgttttccaccca 33
            ||||||||||||||||||
Sbjct: 1047 tcctctgttttccaccca 1064
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>emb|X77085.1|AMDVNSPR3 Aleutian mink disease parvovirus ADV-United DNA for non-structural
            proteins
          Length = 2086

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 8    cttaatcatcctctgttt 25
            ||||||||||||||||||
Sbjct: 1715 cttaatcatcctctgttt 1698
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>emb|X77083.1|AMDVNSPR1 Aleutian mink disease parvovirus (ADV-Utah I) DNA for non-structural
            proteins
          Length = 2086

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 8    cttaatcatcctctgttt 25
            ||||||||||||||||||
Sbjct: 1715 cttaatcatcctctgttt 1698
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>emb|AL161733.20| Human DNA sequence from clone RP11-83J21 on chromosome 9, complete
              sequence
          Length = 176466

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 20     ctgttttccacccaaatc 37
              ||||||||||||||||||
Sbjct: 109702 ctgttttccacccaaatc 109685
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>dbj|AB209642.1| Homo sapiens mRNA for Proto-oncogene tyrosine-protein kinase ABL1
            variant protein
          Length = 5807

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 20   ctgttttccacccaaatc 37
            ||||||||||||||||||
Sbjct: 4456 ctgttttccacccaaatc 4439
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>dbj|AB209456.1| Homo sapiens mRNA for v-abl Abelson murine leukemia viral oncogene
            homolog 1 isoform b variant protein
          Length = 5583

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 20   ctgttttccacccaaatc 37
            ||||||||||||||||||
Sbjct: 4234 ctgttttccacccaaatc 4217
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>gb|M20036.1|MDPCGA Aleutian mink disease parvovirus complete genome
          Length = 4801

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 8    cttaatcatcctctgttt 25
            ||||||||||||||||||
Sbjct: 1837 cttaatcatcctctgttt 1820
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>gb|M32981.1|MDPUPS Aleutian mink disease parvovirus (ADV-Utah 1 strain) RNA, partial
            sequence
          Length = 3454

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 8    cttaatcatcctctgttt 25
            ||||||||||||||||||
Sbjct: 1116 cttaatcatcctctgttt 1099
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>gb|M63044.1|MDPMVT6 Aleutian mink disease parvovirus genomic DNA, partial
          Length = 3455

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 8    cttaatcatcctctgttt 25
            ||||||||||||||||||
Sbjct: 1117 cttaatcatcctctgttt 1100
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>gb|M63048.1|MDPMVT10 Aleutian mink disease parvovirus genomic DNA, partial
          Length = 1601

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 8   cttaatcatcctctgttt 25
           ||||||||||||||||||
Sbjct: 880 cttaatcatcctctgttt 863
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>emb|X16416.1|HSABL Human c-abl mRNA encoding p150 protein
          Length = 5527

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 20   ctgttttccacccaaatc 37
            ||||||||||||||||||
Sbjct: 4181 ctgttttccacccaaatc 4164


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 526,751
Number of Sequences: 3902068
Number of extensions: 526751
Number of successful extensions: 35126
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35071
Number of HSP's gapped (non-prelim): 55
length of query: 63
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 42
effective length of database: 17,151,101,840
effective search space: 720346277280
effective search space used: 720346277280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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