Clone Name | bastl21g05 |
---|---|
Clone Library Name | barley_pub |
>gb|AY445835.1| Bambusa oldhamii sucrose-phosphate synthase mRNA, complete cds Length = 3225 Score = 79.8 bits (40), Expect = 2e-12 Identities = 46/48 (95%) Strand = Plus / Plus Query: 101 atggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148 |||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1 atggcggggaacgactggatcaacagctacctggaggccatcctcgac 48
>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16, complete sequence Length = 164501 Score = 75.8 bits (38), Expect = 3e-11 Identities = 47/50 (94%) Strand = Plus / Plus Query: 99 cgatggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148 |||||| ||||||||||||||||||||||||||| ||||| ||||||||| Sbjct: 74203 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 74252
>dbj|AB232784.1| Lolium perenne LpSPS gene for sucrose phosphate synthase, complete cds Length = 3231 Score = 75.8 bits (38), Expect = 3e-11 Identities = 41/42 (97%) Strand = Plus / Plus Query: 107 gggaacgactggatcaacagctacctcgaggccatcctcgac 148 |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 7 gggaacgactggatcaacagctacctggaggccatcctcgac 48
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 75.8 bits (38), Expect = 3e-11 Identities = 47/50 (94%) Strand = Plus / Plus Query: 99 cgatggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148 |||||| ||||||||||||||||||||||||||| ||||| ||||||||| Sbjct: 12404888 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 12404937
>dbj|AP004041.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1115_A07 Length = 165126 Score = 75.8 bits (38), Expect = 3e-11 Identities = 47/50 (94%) Strand = Plus / Plus Query: 99 cgatggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148 |||||| ||||||||||||||||||||||||||| ||||| ||||||||| Sbjct: 8917 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 8966
>dbj|AK101676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058F14, full insert sequence Length = 3858 Score = 75.8 bits (38), Expect = 3e-11 Identities = 47/50 (94%) Strand = Plus / Plus Query: 99 cgatggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148 |||||| ||||||||||||||||||||||||||| ||||| ||||||||| Sbjct: 194 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 243
>ref|XM_481429.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3201 Score = 71.9 bits (36), Expect = 5e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 101 atggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148 |||| ||||||||||||||||||||||||||| ||||| ||||||||| Sbjct: 1 atggcggggaacgactggatcaacagctacctggaggcgatcctcgac 48
>gb|AY109435.1| Zea mays CL790_1 mRNA sequence Length = 3577 Score = 56.0 bits (28), Expect = 3e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 107 gggaacgactggatcaacagctacctcgaggc 138 |||||||||||||||||||||||||| ||||| Sbjct: 101 gggaacgactggatcaacagctacctggaggc 132
>gb|AF534907.1| Triticum aestivum sucrose-phosphate synthase 9 mRNA, complete cds Length = 3339 Score = 54.0 bits (27), Expect = 1e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 114 actggatcaacagctacctcgaggccatcctcgac 148 ||||||||||||||||||| || |||||||||||| Sbjct: 123 actggatcaacagctacctggacgccatcctcgac 157
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 1e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 114 actggatcaacagctacctcgaggccatcctcgac 148 ||||||||||||||||||| || |||||||||||| Sbjct: 25866601 actggatcaacagctacctggatgccatcctcgac 25866567
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 54.0 bits (27), Expect = 1e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 114 actggatcaacagctacctcgaggccatcctcgac 148 ||||||||||||||||||| || |||||||||||| Sbjct: 21699 actggatcaacagctacctggatgccatcctcgac 21665
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0416A11 Length = 171519 Score = 54.0 bits (27), Expect = 1e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 114 actggatcaacagctacctcgaggccatcctcgac 148 ||||||||||||||||||| || |||||||||||| Sbjct: 148805 actggatcaacagctacctggatgccatcctcgac 148771
>gb|AF310160.1| Triticum aestivum sucrose-phosphate synthase (SPS1) mRNA, complete cds Length = 3418 Score = 52.0 bits (26), Expect = 5e-04 Identities = 41/46 (89%) Strand = Plus / Plus Query: 103 ggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148 |||||||||||| ||||||||| | ||||| ||||| ||||||||| Sbjct: 28 ggtggggaacgagtggatcaacgggtacctggaggcgatcctcgac 73
>gb|AY850374.1| Musa acuminata sucrose phosphate synthase (SPS) gene, promoter and partial cds Length = 659 Score = 48.1 bits (24), Expect = 0.008 Identities = 39/44 (88%) Strand = Plus / Plus Query: 101 atggtggggaacgactggatcaacagctacctcgaggccatcct 144 |||| ||||||||| |||||||||||||| || ||||| ||||| Sbjct: 580 atggcggggaacgattggatcaacagctatctggaggcgatcct 623
>ref|XM_464358.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3259 Score = 46.1 bits (23), Expect = 0.031 Identities = 32/35 (91%) Strand = Plus / Plus Query: 114 actggatcaacagctacctcgaggccatcctcgac 148 ||||||| ||||| |||||||| |||||||||||| Sbjct: 115 actggataaacagttacctcgacgccatcctcgac 149
>ref|XM_506735.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1572_F02.13 mRNA Length = 3327 Score = 46.1 bits (23), Expect = 0.031 Identities = 32/35 (91%) Strand = Plus / Plus Query: 114 actggatcaacagctacctcgaggccatcctcgac 148 ||||||| ||||| |||||||| |||||||||||| Sbjct: 143 actggataaacagttacctcgacgccatcctcgac 177
>ref|XM_506734.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1572_F02.13 mRNA Length = 3490 Score = 46.1 bits (23), Expect = 0.031 Identities = 32/35 (91%) Strand = Plus / Plus Query: 114 actggatcaacagctacctcgaggccatcctcgac 148 ||||||| ||||| |||||||| |||||||||||| Sbjct: 177 actggataaacagttacctcgacgccatcctcgac 211
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.031 Identities = 32/35 (91%) Strand = Plus / Plus Query: 114 actggatcaacagctacctcgaggccatcctcgac 148 ||||||| ||||| |||||||| |||||||||||| Sbjct: 4708664 actggataaacagttacctcgacgccatcctcgac 4708698
>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1572_F02 Length = 93626 Score = 46.1 bits (23), Expect = 0.031 Identities = 32/35 (91%) Strand = Plus / Plus Query: 114 actggatcaacagctacctcgaggccatcctcgac 148 ||||||| ||||| |||||||| |||||||||||| Sbjct: 80736 actggataaacagttacctcgacgccatcctcgac 80770
>dbj|AB001338.1| Saccharum officinarum SoSPS2 premature mRNA for sucrose-phosphate synthase, complete cds Length = 3287 Score = 46.1 bits (23), Expect = 0.031 Identities = 29/31 (93%) Strand = Plus / Plus Query: 114 actggatcaacagctacctcgaggccatcct 144 |||||||||||||||||||||| | |||||| Sbjct: 54 actggatcaacagctacctcgacggcatcct 84
>dbj|AK121486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150H16, full insert sequence Length = 3489 Score = 46.1 bits (23), Expect = 0.031 Identities = 32/35 (91%) Strand = Plus / Plus Query: 114 actggatcaacagctacctcgaggccatcctcgac 148 ||||||| ||||| |||||||| |||||||||||| Sbjct: 176 actggataaacagttacctcgacgccatcctcgac 210
>dbj|AK098898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B04, full insert sequence Length = 3259 Score = 46.1 bits (23), Expect = 0.031 Identities = 32/35 (91%) Strand = Plus / Plus Query: 114 actggatcaacagctacctcgaggccatcctcgac 148 ||||||| ||||| |||||||| |||||||||||| Sbjct: 115 actggataaacagttacctcgacgccatcctcgac 149
>dbj|AK065273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L08, full insert sequence Length = 3326 Score = 46.1 bits (23), Expect = 0.031 Identities = 32/35 (91%) Strand = Plus / Plus Query: 114 actggatcaacagctacctcgaggccatcctcgac 148 ||||||| ||||| |||||||| |||||||||||| Sbjct: 142 actggataaacagttacctcgacgccatcctcgac 176
>gb|U59489.1|MAU59489 Musa acuminata sucrose-phosphate synthase mRNA, partial sequence Length = 1505 Score = 46.1 bits (23), Expect = 0.031 Identities = 32/35 (91%) Strand = Plus / Plus Query: 110 aacgactggatcaacagctacctcgaggccatcct 144 |||||||||||||||||||| || ||||| ||||| Sbjct: 7 aacgactggatcaacagctatctggaggcgatcct 41
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 44.1 bits (22), Expect = 0.12 Identities = 37/42 (88%) Strand = Plus / Minus Query: 103 ggtggggaacgactggatcaacagctacctcgaggccatcct 144 |||||||||||| ||||||||| | ||||| ||||| ||||| Sbjct: 98329 ggtggggaacgagtggatcaacgggtacctggaggcgatcct 98288
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.12 Identities = 37/42 (88%) Strand = Plus / Minus Query: 103 ggtggggaacgactggatcaacagctacctcgaggccatcct 144 |||||||||||| ||||||||| | ||||| ||||| ||||| Sbjct: 7185186 ggtggggaacgagtggatcaacgggtacctggaggcgatcct 7185145
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.12 Identities = 37/42 (88%) Strand = Plus / Minus Query: 103 ggtggggaacgactggatcaacagctacctcgaggccatcct 144 |||||||||||| ||||||||| | ||||| ||||| ||||| Sbjct: 7251080 ggtggggaacgagtggatcaacgggtacctggaggcgatcct 7251039
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgctcgtcgcccggggaggt 89 |||||||||||||||||||| Sbjct: 4080740 cgctcgtcgcccggggaggt 4080759
>emb|Y11821.1|CPSUCPSY1 Craterostigma plantagineum mRNA for sucrose-phosphate synthase, clone Cpsps1 Length = 3436 Score = 40.1 bits (20), Expect = 1.9 Identities = 41/48 (85%) Strand = Plus / Plus Query: 101 atggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148 |||| ||| ||||| ||||| ||||||||||| ||||| || |||||| Sbjct: 45 atggcgggaaacgattggataaacagctaccttgaggcgattctcgac 92
>gb|AF279706.1| Leptotila jamaicensis cytochrome b (cytb) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1017 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 gagctccgatggtggggaa 111 ||||||||||||||||||| Sbjct: 991 gagctccgatggtggggaa 973
>gb|AY135211.1| Oncidium cv. 'Goldiana' sucrose phosphate synthase (SPS) mRNA, complete cds Length = 3820 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 107 gggaacgactggatcaacagcta 129 |||||||||||||| |||||||| Sbjct: 265 gggaacgactggattaacagcta 287
>gb|AF123618.1| Pipreola chlorolepidota cytochrome b gene, partial cds; mitochondrial gene for mitochondrial product Length = 375 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 gagctccgatggtggggaa 111 ||||||||||||||||||| Sbjct: 349 gagctccgatggtggggaa 331
>gb|AF318949.1| Actinidia chinensis sucrose phosphate synthase (SPS2) mRNA, complete cds Length = 3627 Score = 38.2 bits (19), Expect = 7.4 Identities = 34/39 (87%) Strand = Plus / Plus Query: 100 gatggtggggaacgactggatcaacagctacctcgaggc 138 ||||| ||| ||||||||||| ||||| ||||| ||||| Sbjct: 82 gatggcgggaaacgactggataaacagttacctggaggc 120
>gb|AF483318.1| Columbina cruziana cytochrome b (cytb) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1052 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 gagctccgatggtggggaa 111 ||||||||||||||||||| Sbjct: 1027 gagctccgatggtggggaa 1009
>gb|U85449.1|ADU85449 Actinidia deliciosa sucrose-phosphate synthase (KSPS-2) mRNA, partial cds Length = 1830 Score = 38.2 bits (19), Expect = 7.4 Identities = 34/39 (87%) Strand = Plus / Plus Query: 100 gatggtggggaacgactggatcaacagctacctcgaggc 138 ||||| ||| ||||||||||| ||||| ||||| ||||| Sbjct: 99 gatggcgggaaacgactggataaacagttacctggaggc 137 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 414,860 Number of Sequences: 3902068 Number of extensions: 414860 Number of successful extensions: 26868 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26689 Number of HSP's gapped (non-prelim): 179 length of query: 155 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 133 effective length of database: 17,147,199,772 effective search space: 2280577569676 effective search space used: 2280577569676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)