ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY445835.1| Bambusa oldhamii sucrose-phosphate synthase mRNA,... 80 2e-12
2gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome... 76 3e-11
3dbj|AB232784.1| Lolium perenne LpSPS gene for sucrose phosphate ... 76 3e-11
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 76 3e-11
5dbj|AP004041.2| Oryza sativa (japonica cultivar-group) genomic D... 76 3e-11
6dbj|AK101676.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 3e-11
7ref|XM_481429.1| Oryza sativa (japonica cultivar-group), mRNA 72 5e-10
8gb|AY109435.1| Zea mays CL790_1 mRNA sequence 56 3e-05
9gb|AF534907.1| Triticum aestivum sucrose-phosphate synthase 9 mR... 54 1e-04
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 54 1e-04
11dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic D... 54 1e-04
12dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic D... 54 1e-04
13gb|AF310160.1| Triticum aestivum sucrose-phosphate synthase (SPS... 52 5e-04
14gb|AY850374.1| Musa acuminata sucrose phosphate synthase (SPS) g... 48 0.008
15ref|XM_464358.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.031
16ref|XM_506735.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.031
17ref|XM_506734.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.031
18dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.031
19dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.031
20dbj|AB001338.1| Saccharum officinarum SoSPS2 premature mRNA for ... 46 0.031
21dbj|AK121486.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.031
22dbj|AK098898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.031
23dbj|AK065273.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.031
24gb|U59489.1|MAU59489 Musa acuminata sucrose-phosphate synthase m... 46 0.031
25gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.12
26dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.12
27gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.12
28gb|CP000249.1| Frankia sp. CcI3, complete genome 40 1.9
29emb|Y11821.1|CPSUCPSY1 Craterostigma plantagineum mRNA for sucro... 40 1.9
30gb|AF279706.1| Leptotila jamaicensis cytochrome b (cytb) gene, p... 38 7.4
31gb|AY135211.1| Oncidium cv. 'Goldiana' sucrose phosphate synthas... 38 7.4
32gb|AF123618.1| Pipreola chlorolepidota cytochrome b gene, partia... 38 7.4
33gb|AF318949.1| Actinidia chinensis sucrose phosphate synthase (S... 38 7.4
34gb|AF483318.1| Columbina cruziana cytochrome b (cytb) gene, part... 38 7.4
35gb|U85449.1|ADU85449 Actinidia deliciosa sucrose-phosphate synth... 38 7.4

>gb|AY445835.1| Bambusa oldhamii sucrose-phosphate synthase mRNA, complete cds
          Length = 3225

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 46/48 (95%)
 Strand = Plus / Plus

                                                           
Query: 101 atggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148
           |||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1   atggcggggaacgactggatcaacagctacctggaggccatcctcgac 48



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>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16,
             complete sequence
          Length = 164501

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                               
Query: 99    cgatggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148
             |||||| ||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 74203 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 74252



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>dbj|AB232784.1| Lolium perenne LpSPS gene for sucrose phosphate synthase, complete
           cds
          Length = 3231

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                     
Query: 107 gggaacgactggatcaacagctacctcgaggccatcctcgac 148
           |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 7   gggaacgactggatcaacagctacctggaggccatcctcgac 48



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                                  
Query: 99       cgatggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148
                |||||| ||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 12404888 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 12404937



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>dbj|AP004041.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1115_A07
          Length = 165126

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                              
Query: 99   cgatggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148
            |||||| ||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 8917 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 8966



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>dbj|AK101676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058F14, full
           insert sequence
          Length = 3858

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                             
Query: 99  cgatggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148
           |||||| ||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 194 cgatggcggggaacgactggatcaacagctacctggaggcgatcctcgac 243



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>ref|XM_481429.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3201

 Score = 71.9 bits (36), Expect = 5e-10
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                           
Query: 101 atggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148
           |||| ||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1   atggcggggaacgactggatcaacagctacctggaggcgatcctcgac 48



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>gb|AY109435.1| Zea mays CL790_1 mRNA sequence
          Length = 3577

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 107 gggaacgactggatcaacagctacctcgaggc 138
           |||||||||||||||||||||||||| |||||
Sbjct: 101 gggaacgactggatcaacagctacctggaggc 132



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>gb|AF534907.1| Triticum aestivum sucrose-phosphate synthase 9 mRNA, complete cds
          Length = 3339

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 114 actggatcaacagctacctcgaggccatcctcgac 148
           ||||||||||||||||||| || ||||||||||||
Sbjct: 123 actggatcaacagctacctggacgccatcctcgac 157



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 114      actggatcaacagctacctcgaggccatcctcgac 148
                ||||||||||||||||||| || ||||||||||||
Sbjct: 25866601 actggatcaacagctacctggatgccatcctcgac 25866567



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>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0017B12
          Length = 157424

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 114   actggatcaacagctacctcgaggccatcctcgac 148
             ||||||||||||||||||| || ||||||||||||
Sbjct: 21699 actggatcaacagctacctggatgccatcctcgac 21665



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>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0416A11
          Length = 171519

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                 
Query: 114    actggatcaacagctacctcgaggccatcctcgac 148
              ||||||||||||||||||| || ||||||||||||
Sbjct: 148805 actggatcaacagctacctggatgccatcctcgac 148771



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>gb|AF310160.1| Triticum aestivum sucrose-phosphate synthase (SPS1) mRNA, complete
           cds
          Length = 3418

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 103 ggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148
           |||||||||||| ||||||||| | ||||| ||||| |||||||||
Sbjct: 28  ggtggggaacgagtggatcaacgggtacctggaggcgatcctcgac 73



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>gb|AY850374.1| Musa acuminata sucrose phosphate synthase (SPS) gene, promoter and
           partial cds
          Length = 659

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 101 atggtggggaacgactggatcaacagctacctcgaggccatcct 144
           |||| ||||||||| |||||||||||||| || ||||| |||||
Sbjct: 580 atggcggggaacgattggatcaacagctatctggaggcgatcct 623



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>ref|XM_464358.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3259

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 114 actggatcaacagctacctcgaggccatcctcgac 148
           ||||||| ||||| |||||||| ||||||||||||
Sbjct: 115 actggataaacagttacctcgacgccatcctcgac 149



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>ref|XM_506735.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1572_F02.13
           mRNA
          Length = 3327

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 114 actggatcaacagctacctcgaggccatcctcgac 148
           ||||||| ||||| |||||||| ||||||||||||
Sbjct: 143 actggataaacagttacctcgacgccatcctcgac 177



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>ref|XM_506734.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1572_F02.13
           mRNA
          Length = 3490

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 114 actggatcaacagctacctcgaggccatcctcgac 148
           ||||||| ||||| |||||||| ||||||||||||
Sbjct: 177 actggataaacagttacctcgacgccatcctcgac 211



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 114     actggatcaacagctacctcgaggccatcctcgac 148
               ||||||| ||||| |||||||| ||||||||||||
Sbjct: 4708664 actggataaacagttacctcgacgccatcctcgac 4708698



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>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1572_F02
          Length = 93626

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 114   actggatcaacagctacctcgaggccatcctcgac 148
             ||||||| ||||| |||||||| ||||||||||||
Sbjct: 80736 actggataaacagttacctcgacgccatcctcgac 80770



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>dbj|AB001338.1| Saccharum officinarum SoSPS2 premature mRNA for sucrose-phosphate
           synthase, complete cds
          Length = 3287

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 114 actggatcaacagctacctcgaggccatcct 144
           |||||||||||||||||||||| | ||||||
Sbjct: 54  actggatcaacagctacctcgacggcatcct 84



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>dbj|AK121486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150H16, full
           insert sequence
          Length = 3489

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 114 actggatcaacagctacctcgaggccatcctcgac 148
           ||||||| ||||| |||||||| ||||||||||||
Sbjct: 176 actggataaacagttacctcgacgccatcctcgac 210



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>dbj|AK098898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B04, full
           insert sequence
          Length = 3259

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 114 actggatcaacagctacctcgaggccatcctcgac 148
           ||||||| ||||| |||||||| ||||||||||||
Sbjct: 115 actggataaacagttacctcgacgccatcctcgac 149



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>dbj|AK065273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L08, full
           insert sequence
          Length = 3326

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 114 actggatcaacagctacctcgaggccatcctcgac 148
           ||||||| ||||| |||||||| ||||||||||||
Sbjct: 142 actggataaacagttacctcgacgccatcctcgac 176



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>gb|U59489.1|MAU59489 Musa acuminata sucrose-phosphate synthase mRNA, partial sequence
          Length = 1505

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 110 aacgactggatcaacagctacctcgaggccatcct 144
           |||||||||||||||||||| || ||||| |||||
Sbjct: 7   aacgactggatcaacagctatctggaggcgatcct 41



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>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 103   ggtggggaacgactggatcaacagctacctcgaggccatcct 144
             |||||||||||| ||||||||| | ||||| ||||| |||||
Sbjct: 98329 ggtggggaacgagtggatcaacgggtacctggaggcgatcct 98288



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                         
Query: 103     ggtggggaacgactggatcaacagctacctcgaggccatcct 144
               |||||||||||| ||||||||| | ||||| ||||| |||||
Sbjct: 7185186 ggtggggaacgagtggatcaacgggtacctggaggcgatcct 7185145



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                         
Query: 103     ggtggggaacgactggatcaacagctacctcgaggccatcct 144
               |||||||||||| ||||||||| | ||||| ||||| |||||
Sbjct: 7251080 ggtggggaacgagtggatcaacgggtacctggaggcgatcct 7251039



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 70      cgctcgtcgcccggggaggt 89
               ||||||||||||||||||||
Sbjct: 4080740 cgctcgtcgcccggggaggt 4080759



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>emb|Y11821.1|CPSUCPSY1 Craterostigma plantagineum mRNA for sucrose-phosphate synthase,
           clone Cpsps1
          Length = 3436

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 101 atggtggggaacgactggatcaacagctacctcgaggccatcctcgac 148
           |||| ||| ||||| ||||| ||||||||||| ||||| || ||||||
Sbjct: 45  atggcgggaaacgattggataaacagctaccttgaggcgattctcgac 92



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>gb|AF279706.1| Leptotila jamaicensis cytochrome b (cytb) gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 1017

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 93  gagctccgatggtggggaa 111
           |||||||||||||||||||
Sbjct: 991 gagctccgatggtggggaa 973



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>gb|AY135211.1| Oncidium cv. 'Goldiana' sucrose phosphate synthase (SPS) mRNA,
           complete cds
          Length = 3820

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 107 gggaacgactggatcaacagcta 129
           |||||||||||||| ||||||||
Sbjct: 265 gggaacgactggattaacagcta 287



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>gb|AF123618.1| Pipreola chlorolepidota cytochrome b gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 375

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 93  gagctccgatggtggggaa 111
           |||||||||||||||||||
Sbjct: 349 gagctccgatggtggggaa 331



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>gb|AF318949.1| Actinidia chinensis sucrose phosphate synthase (SPS2) mRNA,
           complete cds
          Length = 3627

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 34/39 (87%)
 Strand = Plus / Plus

                                                  
Query: 100 gatggtggggaacgactggatcaacagctacctcgaggc 138
           ||||| ||| ||||||||||| ||||| ||||| |||||
Sbjct: 82  gatggcgggaaacgactggataaacagttacctggaggc 120



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>gb|AF483318.1| Columbina cruziana cytochrome b (cytb) gene, partial cds;
            mitochondrial gene for mitochondrial product
          Length = 1052

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 93   gagctccgatggtggggaa 111
            |||||||||||||||||||
Sbjct: 1027 gagctccgatggtggggaa 1009



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>gb|U85449.1|ADU85449 Actinidia deliciosa sucrose-phosphate synthase (KSPS-2) mRNA,
           partial cds
          Length = 1830

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 34/39 (87%)
 Strand = Plus / Plus

                                                  
Query: 100 gatggtggggaacgactggatcaacagctacctcgaggc 138
           ||||| ||| ||||||||||| ||||| ||||| |||||
Sbjct: 99  gatggcgggaaacgactggataaacagttacctggaggc 137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 414,860
Number of Sequences: 3902068
Number of extensions: 414860
Number of successful extensions: 26868
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26689
Number of HSP's gapped (non-prelim): 179
length of query: 155
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 133
effective length of database: 17,147,199,772
effective search space: 2280577569676
effective search space used: 2280577569676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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