ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl21g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 0.51
2gb|BT018390.1| Zea mays clone EL01N0317F08.d mRNA sequence 36 8.0
3gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 36 8.0
4gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 36 8.0
5emb|CR555306.1| Azoarcus sp. EbN1 complete genome 36 8.0
6emb|AL133503.1|DMBH48C10 Drosophila melanogaster BAC clone BACH4... 36 8.0
7gb|AC104142.6| Drosophila melanogaster X BAC RP98-13K19 (Roswell... 36 8.0
8gb|AE012294.1| Xanthomonas campestris pv. campestris str. ATCC 3... 36 8.0
9gb|CP000133.1| Rhizobium etli CFN 42, complete genome 36 8.0
10gb|AC104149.6| Drosophila melanogaster X BAC RP98-48O22 (Roswell... 36 8.0
11gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 36 8.0
12gb|AE003423.2| Drosophila melanogaster chromosome X, section 7 o... 36 8.0

>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 0.51
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      attctctcgcgcacgcgccg 26
              ||||||||||||||||||||
Sbjct: 407474 attctctcgcgcacgcgccg 407455



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>gb|BT018390.1| Zea mays clone EL01N0317F08.d mRNA sequence
          Length = 1455

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 15  gcgcacgcgccggatccc 32
           ||||||||||||||||||
Sbjct: 192 gcgcacgcgccggatccc 209



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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 13     tcgcgcacgcgccggatc 30
              ||||||||||||||||||
Sbjct: 164753 tcgcgcacgcgccggatc 164736



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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 17     gcacgcgccggatccccg 34
              ||||||||||||||||||
Sbjct: 181352 gcacgcgccggatccccg 181335



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    ctcgcgcacgcgccggat 29
             ||||||||||||||||||
Sbjct: 63468 ctcgcgcacgcgccggat 63485



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>emb|AL133503.1|DMBH48C10 Drosophila melanogaster BAC clone BACH48C10
          Length = 49587

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 12   ctcgcgcacgcgccggatcccc 33
            |||||||||||||| |||||||
Sbjct: 8064 ctcgcgcacgcgcctgatcccc 8085



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>gb|AC104142.6| Drosophila melanogaster X BAC RP98-13K19 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 186753

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 12    ctcgcgcacgcgccggatcccc 33
             |||||||||||||| |||||||
Sbjct: 89091 ctcgcgcacgcgcctgatcccc 89112



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>gb|AE012294.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 202
            of 460 of the complete genome
          Length = 10621

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 18   cacgcgccggatccccggcgcc 39
            ||||||||||| ||||||||||
Sbjct: 6351 cacgcgccggaaccccggcgcc 6330



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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 11      tctcgcgcacgcgccgga 28
               ||||||||||||||||||
Sbjct: 4202309 tctcgcgcacgcgccgga 4202292



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>gb|AC104149.6| Drosophila melanogaster X BAC RP98-48O22 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 193714

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 12     ctcgcgcacgcgccggatcccc 33
              |||||||||||||| |||||||
Sbjct: 165257 ctcgcgcacgcgcctgatcccc 165278



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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 18      cacgcgccggatccccggcgcc 39
               ||||||||||| ||||||||||
Sbjct: 2746250 cacgcgccggaaccccggcgcc 2746271



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>gb|AE003423.2| Drosophila melanogaster chromosome X, section 7 of 74 of the complete
              sequence
          Length = 292830

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 12     ctcgcgcacgcgccggatcccc 33
              |||||||||||||| |||||||
Sbjct: 265998 ctcgcgcacgcgcctgatcccc 266019


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 126,740
Number of Sequences: 3902068
Number of extensions: 126740
Number of successful extensions: 8795
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8677
Number of HSP's gapped (non-prelim): 118
length of query: 57
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 36
effective length of database: 17,151,101,840
effective search space: 617439666240
effective search space used: 617439666240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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