ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl21f07 |
|---|---|
| Clone Library Name | barley_pub |
>DHYS_TOBAC (Q9SC80) Deoxyhypusine synthase (EC 2.5.1.46)| Length = 379 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +3 Query: 222 PLF--GDQDGSLLEHMDYHGEGITQPESPPLNDGLLVDAADQI 344 P+F G DGSL + + +H P++P LN GL++D I Sbjct: 229 PVFCPGLTDGSLGDMLYFHSFKKGDPDNPDLNPGLIIDIVGDI 271
>UHMK1_HUMAN (Q8TAS1) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = -2 Query: 208 QVPSRLLSGDM*SIYEIRHGGSHFCSGNPSLAPTRGREFSP 86 QV SRL SG S+Y +R C GNP P ++F P Sbjct: 24 QVQSRLGSGSSASVYRVR------CCGNPGSPPGALKQFLP 58
>CSMD2_HUMAN (Q7Z408) CUB and sushi domain-containing protein 2 (CUB and sushi| multiple domains protein 2) Length = 3487 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +3 Query: 180 SPERSLDGTCGDPG-PLFGDQDGSLLEHMD 266 S E G+CGDPG P +G ++GS H D Sbjct: 512 SYEEIEQGSCGDPGIPAYGRREGSRFHHGD 541
>ARGC_BIFLO (P59305) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 364 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/59 (27%), Positives = 25/59 (42%) Frame = -3 Query: 279 LHHDNPCAPTSYHLDLQIKAQGLHKSHPDFSQGICNPSTKYATEAATSAVGILPLLRPV 103 L N A + L G H+ P+ Q + + K A EA+ +G P+L P+ Sbjct: 195 LKRTNLLAAEALQSALPYSVGGKHRHIPEILQNFAHAAGKSAAEASEFTLGFTPILAPM 253
>ATPG_PSEAE (Q9HT19) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1| sector gamma subunit) Length = 286 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +3 Query: 222 PLFGDQDGSLLEHMDYHGEGITQPESPPLNDGLLV 326 PL D D L H DY + +P++ L DGLLV Sbjct: 190 PLVADDDQELKHHWDY----LYEPDAKSLLDGLLV 220
>OXAA_MYCPE (Q8EU91) Membrane protein oxaA| Length = 379 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +1 Query: 172 ITYPLREVWMGLVETLGLYL 231 I YPLR+VW GL LG+++ Sbjct: 131 IMYPLRDVWGGLDALLGIFV 150
>IPO7_MOUSE (Q9EPL8) Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)| Length = 1038 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 178 YPLREVWMGLVETLGLYLEIKMVACWSTWIIMVKEL 285 YP R W +V+ +G YL+ ACW ++ + +L Sbjct: 122 YPSR--WTAIVDKIGFYLQSDNSACWLGILLCLYQL 155
>IPO7_HUMAN (O95373) Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)| Length = 1038 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 178 YPLREVWMGLVETLGLYLEIKMVACWSTWIIMVKEL 285 YP R W +V+ +G YL+ ACW ++ + +L Sbjct: 122 YPSR--WTAIVDKIGFYLQSDNSACWLGILLCLYQL 155
>LIN59_CAEEL (O44757) Protein lin-59 (Abnormal cell lineage protein 59)| Length = 1312 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -3 Query: 273 HDNPCAPTSYHLDLQIKAQGLHKSHPDFSQGICNPSTKYATEAATSAVG 127 H +P TS H Q A+ +H+ HP + +C P+T A + +S+ G Sbjct: 21 HHHPS--TSSHQYQQQGARQMHQMHPIQATLMCTPTTTSAAASTSSSGG 67
>UHMK1_RAT (Q63285) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) (PAM COOH-terminal interactor protein 2) (P-CIP2) Length = 419 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = -2 Query: 208 QVPSRLLSGDM*SIYEIRHGGSHFCSGNPSLAPTRGREFSP 86 QV SRL SG S+Y +R C G P P ++F P Sbjct: 24 QVQSRLGSGSSASVYRVR------CCGTPGSPPGALKQFLP 58
>UHMK1_MOUSE (P97343) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = -2 Query: 208 QVPSRLLSGDM*SIYEIRHGGSHFCSGNPSLAPTRGREFSP 86 QV SRL SG S+Y +R C G P P ++F P Sbjct: 24 QVQSRLGSGSSASVYRVR------CCGTPGSPPGALKQFLP 58
>FKBP4_RABIT (P27124) FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl| cis-trans isomerase) (PPIase) (Rotamase) (p59 protein) (HSP-binding immunophilin) (HBI) (FKBP52 protein) (52 kDa FK506-binding protein) (FKBP59) Length = 457 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +3 Query: 225 LFGDQDGSLLEHMDYHGEGITQPESPPLNDGLLVDAA 335 L D+DG ++ + GEG +P NDG +V+ A Sbjct: 141 LTDDEDGGIIRRIRTRGEGYARP-----NDGAIVEVA 172
>PAX3_HUMAN (P23760) Paired box protein Pax-3 (HUP2)| Length = 479 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/49 (28%), Positives = 22/49 (44%) Frame = -3 Query: 279 LHHDNPCAPTSYHLDLQIKAQGLHKSHPDFSQGICNPSTKYATEAATSA 133 +H P P++ H Q S+PD S C PST++ + T + Sbjct: 328 VHRPQPLPPSTVH-------QSTIPSNPDSSSAYCLPSTRHGFSSYTDS 369
>RLUA_YERPE (Q8ZIK1) Ribosomal large subunit pseudouridine synthase A (EC| 5.4.99.-) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) Length = 206 Score = 27.3 bits (59), Expect = 9.5 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -3 Query: 336 RLHQLKVHHSAVGIQVV--*FLHHDNPCAPTSYHLDLQIKAQGLHKSHPDF 190 R HQL+VH A+G ++ F H A S LQ+ AQ L +HP+F Sbjct: 147 RSHQLRVHMLAMGHPILGDGFYAHPEAKAMAS---RLQLHAQQLCITHPEF 194
>GLUQ_SHEON (Q8EIG6) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)| Length = 299 Score = 27.3 bits (59), Expect = 9.5 Identities = 20/69 (28%), Positives = 29/69 (42%) Frame = -3 Query: 327 QLKVHHSAVGIQVV*FLHHDNPCAPTSYHLDLQIKAQGLHKSHPDFSQGICNPSTKYATE 148 QL ++ S +G+ +LH C + L Q AQ + K HP S +T Sbjct: 210 QLSLYQS-LGLTAPQWLHLPLACLTPGFKLSKQNHAQAIDKQHPQASLNAALTFLGQSTV 268 Query: 147 AATSAVGIL 121 TSA +L Sbjct: 269 EPTSAAQML 277
>POMT1_DROME (Q9VTK2) Protein O-mannosyltransferase 1 (EC 2.4.1.109)| (Dolichyl-phosphate-mannose--protein mannosyltransferase 1) (dPOMT1) (Protein rotated abdomen) Length = 886 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/39 (28%), Positives = 19/39 (48%) Frame = +1 Query: 187 REVWMGLVETLGLYLEIKMVACWSTWIIMVKELHNLNPH 303 R++WM + L +++ I + + I K LH PH Sbjct: 388 RQLWMHAISRLLIFVGIPLAVYLGVFYIHFKTLHRAGPH 426 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,401,676 Number of Sequences: 219361 Number of extensions: 1114641 Number of successful extensions: 2597 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2540 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2596 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
