ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl21f04 |
|---|---|
| Clone Library Name | barley_pub |
>DAB1_MACFA (Q9BGX5) Disabled homolog 1| Length = 555 Score = 31.2 bits (69), Expect = 0.75 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 27 PVNHSPPLPAPRSRSTS------AADPTTD 98 P +SPP PAPR S S A+DPTTD Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506
>DAB1_HUMAN (O75553) Disabled homolog 1| Length = 555 Score = 31.2 bits (69), Expect = 0.75 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 27 PVNHSPPLPAPRSRSTS------AADPTTD 98 P +SPP PAPR S S A+DPTTD Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506
>INT2_SALTI (P62592) Integrase/recombinase (E2 protein)| Length = 337 Score = 30.8 bits (68), Expect = 0.98 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = +2 Query: 35 PLPPSSGSQISIHLRRRSNHRYPTRRRPPARVHW---FIRRHG 154 PLPP ++ LR R + + + R A VHW FIR HG Sbjct: 7 PLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHG 49
>INT2_PSEAE (P62591) Integrase/recombinase (E2 protein)| Length = 337 Score = 30.8 bits (68), Expect = 0.98 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = +2 Query: 35 PLPPSSGSQISIHLRRRSNHRYPTRRRPPARVHW---FIRRHG 154 PLPP ++ LR R + + + R A VHW FIR HG Sbjct: 7 PLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHG 49
>INT2_ECOLI (P62590) Integrase/recombinase (E2 protein)| Length = 337 Score = 30.8 bits (68), Expect = 0.98 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = +2 Query: 35 PLPPSSGSQISIHLRRRSNHRYPTRRRPPARVHW---FIRRHG 154 PLPP ++ LR R + + + R A VHW FIR HG Sbjct: 7 PLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHG 49
>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Neuroendocrine-specific protein) (NSP) (Neuroendocrine-specific protein C homolog) (RTN-x) (Reticulon-5) Length = 1192 Score = 30.8 bits (68), Expect = 0.98 Identities = 21/60 (35%), Positives = 26/60 (43%) Frame = -3 Query: 232 PPDPPWWSFAMAAEPLSKWTSSVHGLSMAPDKPVHPRRRATACGVSVVGSAAEVDRDLGA 53 PP PP S + AEP+ WT + P P P+RR GS+ VD L A Sbjct: 143 PPPPPPASVSPQAEPV--WTPPAPAPAAPPSTPAAPKRR---------GSSGSVDETLFA 191
>MYC_TADBR (Q9MZT7) Myc proto-oncogene protein (c-Myc) (Transcription factor| p64) Length = 439 Score = 30.4 bits (67), Expect = 1.3 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -3 Query: 151 MAPDKPVHPRRRATACGVSVVGSAAEVDRDLGAGRGGEWLT 29 + P P+ P RR+ C S V A+ RD+ G GG + T Sbjct: 55 LLPTPPLSPSRRSGLCSPSYVAFASFSPRDVDDGGGGSFST 95
>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)| Length = 1235 Score = 29.6 bits (65), Expect = 2.2 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +3 Query: 9 ASRLFAPVNHSPPLPAPRSR-STSAADPTT 95 +SRL P+NHS +P P SR S SA P + Sbjct: 357 SSRLHPPLNHSRSIPMPSSRCSPSATSPVS 386
>IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)| Length = 1233 Score = 29.6 bits (65), Expect = 2.2 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +3 Query: 9 ASRLFAPVNHSPPLPAPRSR-STSAADPTT 95 +SRL P+NHS +P P SR S SA P + Sbjct: 357 SSRLHPPLNHSRSIPMPSSRCSPSATSPVS 386
>IRS1A_XENLA (Q91615) Insulin receptor substrate 1-A (IRS1-A) (xIRS-1-A)| (XIRS-L) Length = 885 Score = 29.3 bits (64), Expect = 2.8 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%) Frame = +3 Query: 9 ASRLFAPVNHSPPLPAPRSR-STSAADPTT----------DTPHAVALRRGCTGLSGA 149 +SRL P+NHS +P P +R S SA P + T + RR +SG+ Sbjct: 155 SSRLHPPLNHSRSIPMPATRCSPSATSPVSLSSSSTSGHGSTSDCMCPRRSSASISGS 212
>IRS1B_XENLA (P84770) Insulin receptor substrate 1-B (IRS1-B) (xIRS-1-B)| (XIRS-L') Length = 1088 Score = 29.3 bits (64), Expect = 2.8 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%) Frame = +3 Query: 9 ASRLFAPVNHSPPLPAPRSR-STSAADPTT----------DTPHAVALRRGCTGLSGA 149 +SRL P+NHS +P P +R S SA P + T + RR +SG+ Sbjct: 358 SSRLHPPLNHSRSIPMPATRCSPSATSPVSLSSSSTSGHGSTSDCMCPRRSSASISGS 415
>UL04_HHV2H (P28280) Protein UL4| Length = 201 Score = 28.9 bits (63), Expect = 3.7 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = -3 Query: 217 WWSFAMAAEPLSKWTSSVHGLSM 149 WW M A P W SS HG S+ Sbjct: 92 WWDAHMYAYPFDSWVSSSHGESV 114
>TXD11_MOUSE (Q8K2W3) Thioredoxin domain-containing protein 11| Length = 948 Score = 28.9 bits (63), Expect = 3.7 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Frame = +2 Query: 80 RRSNHRYPTRRRPPARVHWFIRRHGQAVHA-----ASPLRQGLRRHGE*PPRRIW 229 RR HR R+R + H +RRH Q + A A L++ R G P W Sbjct: 829 RRDGHRLLRRQRTLEQQHRLLRRHSQKLQALYLKKARELQELARASGTPLPEHTW 883
>Y4XL_RHISN (P55704) Hypothetical protein y4xL| Length = 338 Score = 28.9 bits (63), Expect = 3.7 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = +2 Query: 20 LRSCQPLPPSSGSQISIHLRRRSNHRYPTRRRPPARVHWFIRRHGQAVH--AASPLRQG 190 L S P P Q ++ R R +P+ +RP ARV H Q H AA P R+G Sbjct: 65 LDSAYPYPSPCEWQHDLYTRTRERSPHPSEQRPHARVLQGAPEHDQDQHLEAAGP-REG 122
>IRS1_HUMAN (P35568) Insulin receptor substrate 1 (IRS-1)| Length = 1242 Score = 28.5 bits (62), Expect = 4.9 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +3 Query: 9 ASRLFAPVNHSPPLPAPRSR-STSAADPTT 95 ++RL P+NHS +P P SR S SA P + Sbjct: 362 SARLHPPLNHSRSIPMPASRCSPSATSPVS 391
>ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 28.5 bits (62), Expect = 4.9 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -3 Query: 106 CGVSVVGSAAEVDRDLGAGRGGEWL 32 C V+ +G A E D L GRG WL Sbjct: 300 CVVNAIGEAREADIGLACGRGFAWL 324
>IRS1_CERAE (Q28224) Insulin receptor substrate 1 (IRS-1)| Length = 1251 Score = 28.5 bits (62), Expect = 4.9 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +3 Query: 9 ASRLFAPVNHSPPLPAPRSR-STSAADPTT 95 ++RL P+NHS +P P SR S SA P + Sbjct: 362 SARLHPPLNHSRSIPMPASRCSPSATSPVS 391
>IRS1_XENTR (Q6P4Y6) Insulin receptor substrate 1 (IRS-1)| Length = 654 Score = 28.1 bits (61), Expect = 6.3 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 7/62 (11%) Frame = +2 Query: 41 PPSSGSQISIHLR-------RRSNHRYPTRRRPPARVHWFIRRHGQAVHAASPLRQGLRR 199 PPS G +SIH R R +HR P R +R HG A A ++GL Sbjct: 557 PPSPGEYVSIHFRAPPEEDLREGSHRCPKR----------VRFHGGA--ALGDAQRGLHG 604 Query: 200 HG 205 +G Sbjct: 605 NG 606
>SOS2_HUMAN (Q07890) Son of sevenless homolog 2 (SOS-2)| Length = 1332 Score = 28.1 bits (61), Expect = 6.3 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = +3 Query: 36 HSPPLPAPRSRSTSAADPTTDTPHAVALR 122 HSPP P PR DP DTP V LR Sbjct: 1201 HSPPPPPPR-------DPLPDTPPPVPLR 1222
>POLN_LORDV (P54634) Non-structural polyprotein [Contains: p48; Helicase (2C-like| protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed RNA polymerase (EC 2.7.7.48)] Length = 1699 Score = 28.1 bits (61), Expect = 6.3 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Frame = -3 Query: 226 DPPW-WSFAMAAEPLSKWTSSVHGLSMAPDKPVHPRRRATACGVSVVGSAAE 74 DPP WSF A L K TSS H P H R+ G S G A+ Sbjct: 1288 DPPQKWSFTQACASLDKTTSSGH--------PHHMRKNDCWNGESFTGKLAD 1331
>YNP2_YEAST (P53901) Hypothetical 46.2 kDa protein in YCK2-RPC8 intergenic| region Length = 409 Score = 28.1 bits (61), Expect = 6.3 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +2 Query: 35 PLPPSSGSQISIHLRRRSNHRYPTRRRPPARV 130 PLP +S S + R N PTR+RPP R+ Sbjct: 381 PLPTTSNSNFN----SRKNSMSPTRKRPPPRL 408
>DNMBP_HUMAN (Q6XZF7) Dynamin-binding protein (Scaffold protein Tuba)| Length = 1577 Score = 28.1 bits (61), Expect = 6.3 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = -3 Query: 232 PPDPPW--WSFAMAAE-PLSKWTSSVHGLSMAPDKPVHPRRRATACGVSVVGS 83 PP P W +A + P S T V+G+S P P HP + + +V GS Sbjct: 384 PPRSPGVEWEMPLATDSPTSDPTEVVNGISSQPQVPFHPNLQKSQYYSTVGGS 436
>ROR1_HUMAN (Q01973) Tyrosine-protein kinase transmembrane receptor ROR1| precursor (EC 2.7.10.1) (Neurotrophic tyrosine kinase, receptor-related 1) Length = 937 Score = 27.7 bits (60), Expect = 8.3 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 30 VNHSPPLPAPRSRSTSAADPTTDTPHAVAL 119 + H PP P+SRS S+A +T T H +L Sbjct: 845 IQHCPP---PKSRSPSSASGSTSTGHVTSL 871
>BT1A1_MOUSE (Q62556) Butyrophilin subfamily 1 member A1 precursor (BT)| Length = 524 Score = 27.7 bits (60), Expect = 8.3 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +2 Query: 119 PARVHWFIRRHGQAVHAASPLRQGLRRHGE*PPRRI 226 P W + +G A +PLR LR G PPRR+ Sbjct: 390 PDNGFWAVELYGNGYWALTPLRTSLRLAG--PPRRV 423
>FTSH_TOBAC (O82150) Cell division protein ftsH homolog, chloroplast precursor| (EC 3.4.24.-) (DS9) Length = 714 Score = 27.7 bits (60), Expect = 8.3 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 21 FAPVNHSPPLPAPRSRSTSAADPTTDTP 104 +A N +P +P PR AA+PTT P Sbjct: 74 YALDNTTPTVPTPRVIQAEAANPTTSNP 101
>NHK1_DROME (Q7KRY6) Nucleosomal histone kinase 1 (EC 2.7.11.1) (Protein| baellchen) Length = 599 Score = 27.7 bits (60), Expect = 8.3 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +3 Query: 27 PVNHSPPLPAPRSRSTSAADPTTDTPHAVALR 122 P + P +P+ RST A P TP A LR Sbjct: 443 PRERATPKASPKPRSTPKASPKPQTPTAARLR 474
>ZN687_MOUSE (Q9D2D7) Zinc finger protein 687| Length = 1237 Score = 27.7 bits (60), Expect = 8.3 Identities = 21/68 (30%), Positives = 22/68 (32%) Frame = +3 Query: 27 PVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTGLSGAMDKPCTLLVHFDKGSAAMA 206 P PLPAP DP T C + D P L HF A Sbjct: 1186 PEGGDSPLPAP-------GDPLT-----------CKVCGKSCDSPLNLKTHFRTHGMAFI 1227 Query: 207 NDHQGGSG 230 QGGSG Sbjct: 1228 RARQGGSG 1235
>DAB1_MOUSE (P97318) Disabled homolog 1| Length = 588 Score = 27.7 bits (60), Expect = 8.3 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 6/30 (20%) Frame = +3 Query: 27 PVNHSPPLPAPRSRSTS------AADPTTD 98 P +SPP PAPR S S +DPT D Sbjct: 510 PSTNSPPTPAPRQSSPSKSSASHVSDPTAD 539 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.136 0.502 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,685,479 Number of Sequences: 219361 Number of extensions: 667398 Number of successful extensions: 3294 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3059 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3278 length of database: 80,573,946 effective HSP length: 54 effective length of database: 68,728,452 effective search space used: 1649482848 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
